Wall clock time and date at job start Sun Mar 29 2020 22:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36939 * 119.99981 * 2 1 4 4 H 1.07997 * 119.99310 * 203.90920 * 3 2 1 5 5 C 1.38803 * 119.99840 * 23.90445 * 3 2 1 6 6 N 1.31618 * 120.00640 * 16.92895 * 5 3 2 7 7 Si 1.86805 * 120.00071 * 196.92359 * 5 3 2 8 8 H 1.48506 * 109.46916 * 60.00061 * 7 5 3 9 9 H 1.48496 * 109.47599 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46761 * 300.00643 * 7 5 3 11 11 C 1.46497 * 119.99876 * 179.97438 * 2 1 3 12 12 C 1.50701 * 109.47021 * 270.00198 * 11 2 1 13 13 O 1.21716 * 120.00398 * 359.97438 * 12 11 2 14 14 N 1.32303 * 119.99950 * 179.97438 * 12 11 2 15 15 C 1.34671 * 119.99867 * 244.83264 * 14 12 11 16 16 C 1.41192 * 120.66557 * 183.44373 * 15 14 12 17 17 C 1.35345 * 119.26488 * 179.97438 * 16 15 14 18 18 N 1.35423 * 120.68411 * 0.02562 * 17 16 15 19 19 H 0.97005 * 119.28619 * 179.97438 * 18 17 16 20 20 C 1.35434 * 121.43870 * 359.97438 * 18 17 16 21 21 C 1.35344 * 120.68409 * 359.97438 * 20 18 17 22 22 H 1.09003 * 109.47262 * 273.96564 * 1 2 3 23 23 H 1.09003 * 109.47001 * 33.96836 * 1 2 3 24 24 H 1.09003 * 109.47142 * 153.96569 * 1 2 3 25 25 H 0.96999 * 120.00514 * 179.97438 * 6 5 3 26 26 H 1.08996 * 109.47060 * 149.99940 * 11 2 1 27 27 H 1.09004 * 109.47404 * 29.99488 * 11 2 1 28 28 H 1.08006 * 120.36680 * 359.95273 * 16 15 14 29 29 H 1.08002 * 119.65869 * 179.72136 * 17 16 15 30 30 H 1.07999 * 119.65782 * 180.02562 * 20 18 17 31 31 H 1.08000 * 120.37220 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1602 1.2259 -0.3791 5 6 1.5450 2.3364 0.4871 6 7 0.4709 2.2461 1.2424 7 14 2.2556 4.0131 0.0708 8 1 2.2502 4.2011 -1.4023 9 1 1.4325 5.0719 0.7084 10 1 3.6496 4.0991 0.5756 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7031 1.4216 13 8 2.0536 -1.0175 2.3465 14 7 3.0985 -2.8298 1.6639 15 6 2.4696 -3.8518 2.2751 16 6 3.1687 -5.0332 2.6055 17 6 2.5087 -6.0425 3.2200 18 7 1.1925 -5.9277 3.5172 19 1 0.7395 -6.6638 3.9575 20 6 0.4948 -4.8075 3.2131 21 6 1.0984 -3.7631 2.5994 22 1 -0.3634 0.0711 1.0252 23 1 -0.3633 0.8523 -0.5742 24 1 -0.3633 -0.9234 -0.4511 25 1 0.0485 3.0501 1.5831 26 1 3.1499 -1.1386 -0.5133 27 1 1.6084 -2.0287 -0.5129 28 1 4.2183 -5.1305 2.3702 29 1 3.0361 -6.9508 3.4716 30 1 -0.5540 -4.7466 3.4637 31 1 0.5373 -2.8720 2.3596 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340634552.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:15 Heat of formation + Delta-G solvation = 63.060935 kcal Electronic energy + Delta-G solvation = -16150.821067 eV Core-core repulsion = 13434.842861 eV Total energy + Delta-G solvation = -2715.978206 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.56087 -38.37678 -35.12621 -34.23958 -31.65237 -31.11498 -30.40986 -27.01802 -25.61046 -23.85136 -23.26532 -21.20148 -19.32255 -18.70447 -16.63971 -16.46686 -16.08347 -15.01281 -14.91891 -14.44419 -14.20954 -13.87473 -13.51522 -13.33409 -12.64918 -12.31586 -11.82950 -11.74355 -11.02102 -10.91541 -10.67340 -10.50141 -10.24877 -9.87582 -9.74924 -9.70465 -9.52241 -8.45660 -8.21271 -7.24242 -6.48533 -5.53408 -2.97580 1.14260 1.39123 2.85358 3.27528 3.52665 3.56012 3.58200 3.89999 4.46265 4.61682 4.67763 5.05631 5.23099 5.32100 5.59907 5.69066 5.78714 5.94993 6.18718 6.35645 6.50368 6.65397 6.80116 6.81997 6.89949 7.24946 7.42329 7.86674 7.97964 8.50026 8.56040 9.26730 9.41091 10.03112 10.52545 11.51868 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.052634 B = 0.005739 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.846954 B = 4877.764075 C = 5051.073173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.576 5.576 3 C -0.255 4.255 4 H 0.067 0.933 5 C 0.007 3.993 6 N -0.895 5.895 7 Si 0.903 3.097 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.129 3.871 12 C 0.447 3.553 13 O -0.487 6.487 14 N -0.619 5.619 15 C 0.279 3.721 16 C -0.191 4.191 17 C 0.111 3.889 18 N -0.599 5.599 19 H 0.416 0.584 20 C 0.119 3.881 21 C -0.236 4.236 22 H 0.032 0.968 23 H 0.042 0.958 24 H -0.003 1.003 25 H 0.250 0.750 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.147 0.853 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 -21.529 3.910 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.297 5.297 3 C -0.385 4.385 4 H 0.085 0.915 5 C -0.192 4.192 6 N -0.538 5.538 7 Si 0.733 3.267 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.209 1.209 11 C -0.003 4.003 12 C 0.231 3.769 13 O -0.359 6.359 14 N -0.353 5.353 15 C 0.116 3.884 16 C -0.218 4.218 17 C -0.018 4.018 18 N -0.205 5.205 19 H 0.250 0.750 20 C -0.010 4.010 21 C -0.264 4.264 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.015 0.985 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.165 0.835 29 H 0.182 0.818 30 H 0.180 0.820 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.538 -20.493 4.025 20.891 hybrid contribution -0.390 0.814 0.328 0.961 sum -0.928 -19.679 4.354 20.176 Atomic orbital electron populations 1.20796 0.82561 0.95437 0.99504 1.43874 1.01791 1.00111 1.83925 1.19110 0.99314 0.85105 1.34973 0.91474 1.25041 0.98491 0.98478 0.97221 1.70115 1.22510 1.27092 1.34115 0.86366 0.78408 0.84034 0.77920 1.21045 1.21703 1.20949 1.21101 0.97637 0.89627 0.91889 1.23527 0.73128 0.85052 0.95235 1.90783 1.41192 1.57107 1.46844 1.68590 1.37035 1.04678 1.25026 1.18712 0.90132 0.92827 0.86768 1.20650 1.01497 0.92968 1.06657 1.21667 0.83596 0.99785 0.96733 1.40864 1.09141 1.16932 1.53531 0.74951 1.21641 0.97391 0.85914 0.96034 1.21818 0.96807 1.00387 1.07355 0.94932 0.93931 0.98463 0.93954 0.90934 0.91961 0.83500 0.81829 0.82035 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.39 9.05 59.85 0.54 4.93 16 2 N -0.58 -16.49 2.40 -182.50 -0.44 -16.93 16 3 C -0.26 -7.87 9.62 -15.06 -0.14 -8.02 16 4 H 0.07 2.03 7.88 -52.49 -0.41 1.61 16 5 C 0.01 0.22 5.00 -17.43 -0.09 0.13 16 6 N -0.89 -28.74 11.01 55.49 0.61 -28.13 16 7 Si 0.90 23.70 29.59 -169.99 -5.03 18.67 16 8 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 9 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 10 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 11 C 0.13 3.19 6.26 -5.19 -0.03 3.15 16 12 C 0.45 11.42 6.00 -12.08 -0.07 11.34 16 13 O -0.49 -14.65 16.33 5.17 0.08 -14.56 16 14 N -0.62 -13.58 10.45 -10.39 -0.11 -13.69 16 15 C 0.28 4.80 6.59 -84.38 -0.56 4.24 16 16 C -0.19 -2.26 10.00 -39.49 -0.39 -2.65 16 17 C 0.11 0.76 11.17 -17.00 -0.19 0.57 16 18 N -0.60 -3.49 5.23 -13.05 -0.07 -3.56 16 19 H 0.42 0.61 8.90 -40.82 -0.36 0.25 16 20 C 0.12 1.10 11.17 -16.99 -0.19 0.91 16 21 C -0.24 -3.65 9.04 -39.50 -0.36 -4.00 16 22 H 0.03 0.97 7.39 -51.93 -0.38 0.58 16 23 H 0.04 1.19 7.43 -51.93 -0.39 0.81 16 24 H 0.00 -0.07 7.85 -51.93 -0.41 -0.48 16 25 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.07 1.74 8.03 -51.93 -0.42 1.32 16 27 H 0.06 1.35 7.87 -51.93 -0.41 0.94 16 28 H 0.15 1.59 8.06 -52.48 -0.42 1.17 16 29 H 0.16 0.36 8.06 -52.49 -0.42 -0.06 16 30 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.14 2.73 6.65 -52.49 -0.35 2.38 16 LS Contribution 274.70 15.07 4.14 4.14 Total: -1.00 -42.24 274.70 -5.82 -48.06 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: -3.53 Total: -4.61 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -1.48 Total: 10.60 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.00 Total: -62.30 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.08 Total: -14.56 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.03 Total: 18.67 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -42.24 -5.82 -48.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340634552.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.123 kcal (2) G-P(sol) polarization free energy of solvation -42.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds