Wall clock time and date at job start Sun Mar 29 2020 22:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36939 * 119.99981 * 2 1 4 4 H 1.07997 * 119.99310 * 203.90920 * 3 2 1 5 5 C 1.38803 * 119.99840 * 23.90445 * 3 2 1 6 6 N 1.31618 * 120.00640 * 16.92895 * 5 3 2 7 7 Si 1.86805 * 120.00071 * 196.92359 * 5 3 2 8 8 H 1.48506 * 109.46916 * 60.00061 * 7 5 3 9 9 H 1.48496 * 109.47599 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46761 * 300.00643 * 7 5 3 11 11 C 1.46497 * 119.99876 * 179.97438 * 2 1 3 12 12 C 1.50701 * 109.47021 * 270.00198 * 11 2 1 13 13 O 1.21716 * 120.00398 * 359.97438 * 12 11 2 14 14 N 1.32303 * 119.99950 * 179.97438 * 12 11 2 15 15 C 1.34671 * 119.99867 * 244.83264 * 14 12 11 16 16 C 1.41192 * 120.66557 * 183.44373 * 15 14 12 17 17 C 1.35345 * 119.26488 * 179.97438 * 16 15 14 18 18 N 1.35423 * 120.68411 * 0.02562 * 17 16 15 19 19 H 0.97005 * 119.28619 * 179.97438 * 18 17 16 20 20 C 1.35434 * 121.43870 * 359.97438 * 18 17 16 21 21 C 1.35344 * 120.68409 * 359.97438 * 20 18 17 22 22 H 1.09003 * 109.47262 * 273.96564 * 1 2 3 23 23 H 1.09003 * 109.47001 * 33.96836 * 1 2 3 24 24 H 1.09003 * 109.47142 * 153.96569 * 1 2 3 25 25 H 0.96999 * 120.00514 * 179.97438 * 6 5 3 26 26 H 1.08996 * 109.47060 * 149.99940 * 11 2 1 27 27 H 1.09004 * 109.47404 * 29.99488 * 11 2 1 28 28 H 1.08006 * 120.36680 * 359.95273 * 16 15 14 29 29 H 1.08002 * 119.65869 * 179.72136 * 17 16 15 30 30 H 1.07999 * 119.65782 * 180.02562 * 20 18 17 31 31 H 1.08000 * 120.37220 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1602 1.2259 -0.3791 5 6 1.5450 2.3364 0.4871 6 7 0.4709 2.2461 1.2424 7 14 2.2556 4.0131 0.0708 8 1 2.2502 4.2011 -1.4023 9 1 1.4325 5.0719 0.7084 10 1 3.6496 4.0991 0.5756 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7031 1.4216 13 8 2.0536 -1.0175 2.3465 14 7 3.0985 -2.8298 1.6639 15 6 2.4696 -3.8518 2.2751 16 6 3.1687 -5.0332 2.6055 17 6 2.5087 -6.0425 3.2200 18 7 1.1925 -5.9277 3.5172 19 1 0.7395 -6.6638 3.9575 20 6 0.4948 -4.8075 3.2131 21 6 1.0984 -3.7631 2.5994 22 1 -0.3634 0.0711 1.0252 23 1 -0.3633 0.8523 -0.5742 24 1 -0.3633 -0.9234 -0.4511 25 1 0.0485 3.0501 1.5831 26 1 3.1499 -1.1386 -0.5133 27 1 1.6084 -2.0287 -0.5129 28 1 4.2183 -5.1305 2.3702 29 1 3.0361 -6.9508 3.4716 30 1 -0.5540 -4.7466 3.4637 31 1 0.5373 -2.8720 2.3596 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340634552.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:15 Heat of formation + Delta-G solvation = 26.958997 kcal Electronic energy + Delta-G solvation = -16152.386564 eV Core-core repulsion = 13434.842861 eV Total energy + Delta-G solvation = -2717.543704 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.59884 -40.01986 -37.09940 -35.74708 -33.32592 -32.57072 -31.76947 -28.91922 -27.87648 -25.12990 -24.32101 -23.17098 -20.49063 -19.90258 -18.81488 -17.80537 -17.38724 -16.97335 -16.20155 -15.98143 -15.66668 -15.34849 -15.22963 -14.84191 -14.22492 -13.96630 -13.74390 -13.15171 -12.78855 -12.73540 -12.56578 -12.36298 -12.17331 -12.09040 -11.90726 -11.25543 -10.65308 -10.55713 -9.98641 -8.86140 -8.35849 -7.83473 -5.32656 0.11913 0.42013 1.40506 1.46184 1.52896 1.69195 2.11283 2.49749 2.71437 3.24630 3.51249 3.75253 3.84455 4.09656 4.22613 4.29367 4.45217 4.63598 4.69536 4.71566 4.83601 5.16816 5.20159 5.39807 5.56122 5.62061 5.79980 5.88504 6.29618 6.41109 6.99625 7.10927 7.61529 7.85090 8.26794 9.20816 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.052634 B = 0.005739 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.846954 B = 4877.764075 C = 5051.073173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.596 5.596 3 C -0.274 4.274 4 H 0.064 0.936 5 C -0.053 4.053 6 N -0.931 5.931 7 Si 0.977 3.023 8 H -0.267 1.267 9 H -0.288 1.288 10 H -0.281 1.281 11 C 0.125 3.875 12 C 0.464 3.536 13 O -0.566 6.566 14 N -0.700 5.700 15 C 0.283 3.717 16 C -0.236 4.236 17 C 0.173 3.827 18 N -0.557 5.557 19 H 0.451 0.549 20 C 0.182 3.818 21 C -0.304 4.304 22 H -0.005 1.005 23 H 0.024 0.976 24 H 0.035 0.965 25 H 0.247 0.753 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.153 0.847 29 H 0.236 0.764 30 H 0.210 0.790 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 -26.250 5.174 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.318 5.318 3 C -0.404 4.404 4 H 0.082 0.918 5 C -0.249 4.249 6 N -0.576 5.576 7 Si 0.803 3.197 8 H -0.193 1.193 9 H -0.214 1.214 10 H -0.207 1.207 11 C -0.005 4.005 12 C 0.250 3.750 13 O -0.445 6.445 14 N -0.442 5.442 15 C 0.130 3.870 16 C -0.262 4.262 17 C 0.041 3.959 18 N -0.162 5.162 19 H 0.293 0.707 20 C 0.049 3.951 21 C -0.332 4.332 22 H 0.013 0.987 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.170 0.830 29 H 0.252 0.748 30 H 0.227 0.773 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.896 -25.406 5.320 25.972 hybrid contribution -0.385 1.613 0.198 1.670 sum -1.282 -23.793 5.518 24.458 Atomic orbital electron populations 1.20513 0.82363 0.96408 0.97210 1.44040 1.02262 1.00898 1.84605 1.19451 0.99468 0.86635 1.34854 0.91797 1.25965 0.99206 1.02471 0.97208 1.70328 1.24110 1.27723 1.35485 0.85222 0.77374 0.78709 0.78362 1.19250 1.21385 1.20707 1.21193 0.97594 0.88854 0.92875 1.23252 0.71534 0.86258 0.93920 1.90701 1.45780 1.59499 1.48481 1.68286 1.35800 1.05504 1.34633 1.19452 0.91058 0.92832 0.83627 1.20821 1.02532 0.92743 1.10117 1.22624 0.83082 0.99694 0.90479 1.41315 1.09167 1.16412 1.49298 0.70738 1.22118 0.98953 0.84065 0.89963 1.21545 0.96642 1.01850 1.13170 0.98700 0.95743 0.94630 0.94389 0.91110 0.89341 0.82968 0.74767 0.77300 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 10.38 9.05 127.77 1.16 11.53 16 2 N -0.60 -36.32 2.40 -731.30 -1.76 -38.07 16 3 C -0.27 -17.85 9.62 84.03 0.81 -17.04 16 4 H 0.06 4.08 7.88 -2.91 -0.02 4.05 16 5 C -0.05 -3.42 5.00 84.86 0.42 -3.00 16 6 N -0.93 -63.23 11.01 21.65 0.24 -62.99 16 7 Si 0.98 50.82 29.59 68.60 2.03 52.85 16 8 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 9 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 10 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 11 C 0.13 6.62 6.26 85.63 0.54 7.16 16 12 C 0.46 25.83 6.00 88.04 0.53 26.36 16 13 O -0.57 -37.41 16.33 -4.40 -0.07 -37.48 16 14 N -0.70 -33.09 10.45 -306.34 -3.20 -36.29 16 15 C 0.28 9.90 6.59 40.16 0.26 10.16 16 16 C -0.24 -4.87 10.00 22.33 0.22 -4.65 16 17 C 0.17 1.04 11.17 83.47 0.93 1.97 16 18 N -0.56 -2.00 5.23 -195.19 -1.02 -3.02 16 19 H 0.45 -3.23 8.90 -92.70 -0.82 -4.06 16 20 C 0.18 2.43 11.17 83.47 0.93 3.36 16 21 C -0.30 -9.38 9.04 22.33 0.20 -9.18 16 22 H -0.01 -0.34 7.39 -2.39 -0.02 -0.36 16 23 H 0.02 1.43 7.43 -2.39 -0.02 1.42 16 24 H 0.04 1.71 7.85 -2.39 -0.02 1.69 16 25 H 0.25 16.05 8.31 -92.71 -0.77 15.28 16 26 H 0.07 3.66 8.03 -2.39 -0.02 3.64 16 27 H 0.09 4.06 7.87 -2.39 -0.02 4.04 16 28 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 29 H 0.24 -1.52 8.06 -2.91 -0.02 -1.55 16 30 H 0.21 1.02 8.06 -2.91 -0.02 0.99 16 31 H 0.10 4.00 6.65 -2.91 -0.02 3.98 16 Total: -1.00 -108.76 274.70 2.55 -106.21 By element: Atomic # 1 Polarization: -8.22 SS G_CDS: 0.32 Total: -7.90 kcal Atomic # 6 Polarization: 20.67 SS G_CDS: 6.01 Total: 26.68 kcal Atomic # 7 Polarization: -134.63 SS G_CDS: -5.74 Total: -140.37 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.07 Total: -37.48 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 2.03 Total: 52.85 kcal Total: -108.76 2.55 -106.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340634552.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.173 kcal (2) G-P(sol) polarization free energy of solvation -108.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds