Wall clock time and date at job start Sun Mar 29 2020 22:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36881 * 120.00014 * 2 1 4 4 H 1.08000 * 119.99974 * 148.87324 * 3 2 1 5 5 C 1.39009 * 119.99851 * 328.86840 * 3 2 1 6 6 N 1.31400 * 119.99657 * 64.65387 * 5 3 2 7 7 Si 1.86795 * 120.00267 * 244.64441 * 5 3 2 8 8 H 1.48495 * 109.47095 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47028 * 120.00734 * 7 5 3 10 10 H 1.48503 * 109.47350 * 240.00579 * 7 5 3 11 11 C 1.34775 * 119.99752 * 180.02562 * 2 1 3 12 12 O 1.21727 * 120.00090 * 175.11041 * 11 2 1 13 13 C 1.46645 * 120.00249 * 355.10838 * 11 2 1 14 14 C 1.36773 * 126.85336 * 169.29025 * 13 11 2 15 15 N 1.33304 * 107.77981 * 179.69712 * 14 13 11 16 16 C 1.30870 * 109.70046 * 0.27077 * 15 14 13 17 17 C 1.50692 * 125.41271 * 179.97438 * 16 15 14 18 18 C 1.53006 * 117.49926 * 163.76731 * 17 16 15 19 19 C 1.53008 * 117.49977 * 95.10873 * 17 16 15 20 20 N 1.34549 * 109.17360 * 359.97438 * 16 15 14 21 21 H 0.97002 * 126.47424 * 179.97438 * 20 16 15 22 22 H 1.09006 * 109.46648 * 263.67470 * 1 2 3 23 23 H 1.08997 * 109.46989 * 23.67508 * 1 2 3 24 24 H 1.08998 * 109.47578 * 143.67540 * 1 2 3 25 25 H 0.97005 * 119.99678 * 179.97438 * 6 5 3 26 26 H 1.08001 * 126.11172 * 359.96900 * 14 13 11 27 27 H 1.08997 * 115.55322 * 309.43744 * 17 16 15 28 28 H 1.08997 * 117.49838 * 0.02562 * 18 17 16 29 29 H 1.08998 * 117.50057 * 145.02447 * 18 17 16 30 30 H 1.09004 * 117.49689 * 214.97997 * 19 17 16 31 31 H 1.08993 * 117.49741 * 359.97402 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1854 0.0000 4 1 3.1128 1.2527 0.4835 5 6 1.6045 2.3026 -0.6224 6 7 0.4950 2.8352 -0.1621 7 14 2.4496 3.0467 -2.1129 8 1 3.6727 2.2662 -2.4293 9 1 1.5257 3.0111 -3.2748 10 1 2.8220 4.4540 -1.8195 11 6 2.1389 -1.1672 -0.0005 12 8 3.3528 -1.1692 -0.0904 13 6 1.4096 -2.4349 0.1072 14 6 1.9163 -3.6913 -0.0813 15 7 0.9274 -4.5630 0.1168 16 6 -0.1737 -3.9209 0.4137 17 6 -1.5063 -4.5613 0.7053 18 6 -2.5679 -3.7010 1.3938 19 6 -1.8625 -4.8149 2.1716 20 7 0.0732 -2.5983 0.4172 21 1 -0.5657 -1.8929 0.6050 22 1 -0.3633 -0.1132 1.0215 23 1 -0.3633 0.9412 -0.4126 24 1 -0.3634 -0.8279 -0.6087 25 1 0.1150 3.6150 -0.5962 26 1 2.9365 -3.9341 -0.3397 27 1 -1.8482 -5.2906 -0.0290 28 1 -2.3025 -2.6718 1.6355 29 1 -3.6082 -3.8647 1.1128 30 1 -2.4390 -5.7109 2.4017 31 1 -1.1327 -4.5190 2.9252 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341392712.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:43 Heat of formation + Delta-G solvation = 79.168553 kcal Electronic energy + Delta-G solvation = -16386.201193 eV Core-core repulsion = 13670.921465 eV Total energy + Delta-G solvation = -2715.279727 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.79129 -38.16659 -36.96645 -34.91764 -32.84133 -31.69153 -29.18187 -26.71245 -25.29976 -23.44393 -22.61596 -21.47298 -20.40462 -19.31532 -17.63068 -16.74326 -15.86505 -15.55419 -14.82892 -14.77404 -14.44487 -14.09412 -13.76144 -13.25670 -12.74279 -12.19992 -12.09714 -12.03041 -11.73794 -11.61399 -11.05633 -10.76526 -10.67097 -10.64522 -10.28013 -9.75772 -9.64039 -8.75172 -8.51855 -8.12179 -7.89779 -7.21197 -3.78866 1.97532 2.96527 3.17743 3.23811 3.34689 3.42449 3.70979 3.93029 4.14507 4.36027 4.60067 4.67748 4.79876 4.83439 5.16919 5.39282 5.45643 5.63500 5.68548 5.84702 5.85180 5.93152 6.05986 6.13622 6.39165 6.62258 7.08103 7.11074 7.64840 8.11155 8.27931 8.42418 8.99798 9.15789 9.85845 9.91662 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035928 B = 0.007049 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.150312 B = 3971.254166 C = 4522.971822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.422 5.422 3 C -0.401 4.401 4 H 0.109 0.891 5 C 0.121 3.879 6 N -0.762 5.762 7 Si 0.835 3.165 8 H -0.255 1.255 9 H -0.275 1.275 10 H -0.279 1.279 11 C 0.498 3.502 12 O -0.570 6.570 13 C -0.031 4.031 14 C 0.024 3.976 15 N -0.488 5.488 16 C 0.221 3.779 17 C -0.069 4.069 18 C -0.180 4.180 19 C -0.159 4.159 20 N -0.556 5.556 21 H 0.421 0.579 22 H 0.037 0.963 23 H 0.104 0.896 24 H 0.041 0.959 25 H 0.279 0.721 26 H 0.178 0.822 27 H 0.130 0.870 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.744 -7.713 1.643 12.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.140 5.140 3 C -0.522 4.522 4 H 0.127 0.873 5 C -0.098 4.098 6 N -0.388 5.388 7 Si 0.656 3.344 8 H -0.179 1.179 9 H -0.200 1.200 10 H -0.205 1.205 11 C 0.288 3.712 12 O -0.455 6.455 13 C -0.148 4.148 14 C -0.129 4.129 15 N -0.208 5.208 16 C -0.041 4.041 17 C -0.089 4.089 18 C -0.217 4.217 19 C -0.197 4.197 20 N -0.168 5.168 21 H 0.267 0.733 22 H 0.055 0.945 23 H 0.122 0.878 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.195 0.805 27 H 0.148 0.852 28 H 0.110 0.890 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.241 -8.359 1.579 12.561 hybrid contribution -0.245 1.783 -0.590 1.895 sum -9.486 -6.576 0.989 11.585 Atomic orbital electron populations 1.22421 0.84428 1.03615 0.99119 1.43335 1.03815 1.05320 1.61551 1.18799 1.05546 0.86463 1.41414 0.87337 1.25420 0.93405 0.94776 0.96232 1.70644 1.21254 1.15813 1.31132 0.87449 0.83025 0.78618 0.85324 1.17865 1.20039 1.20496 1.16482 0.86928 0.80792 0.86962 1.90673 1.12417 1.85485 1.56925 1.21877 0.83217 0.98326 1.11404 1.22413 0.99023 0.86878 1.04535 1.69935 0.98159 1.33630 1.19065 1.22030 0.95729 0.80574 1.05799 1.20128 0.88930 1.02476 0.97328 1.23059 0.97725 0.96744 1.04212 1.23030 1.02860 1.00252 0.93561 1.44161 1.10592 1.08792 1.53222 0.73345 0.94454 0.87768 0.94057 0.91023 0.80513 0.85194 0.88967 0.87493 0.87740 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.99 8.50 59.85 0.51 1.50 16 2 N -0.42 -10.64 3.01 -123.70 -0.37 -11.01 16 3 C -0.40 -10.94 8.84 -15.01 -0.13 -11.07 16 4 H 0.11 3.20 7.83 -52.49 -0.41 2.79 16 5 C 0.12 3.02 4.68 -17.45 -0.08 2.94 16 6 N -0.76 -18.25 11.82 55.50 0.66 -17.59 16 7 Si 0.84 18.83 29.69 -169.99 -5.05 13.78 16 8 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 11 C 0.50 12.69 7.59 -12.87 -0.10 12.60 16 12 O -0.57 -16.41 16.75 5.16 0.09 -16.32 16 13 C -0.03 -0.66 6.59 -82.15 -0.54 -1.20 16 14 C 0.02 0.48 11.68 -17.44 -0.20 0.28 16 15 N -0.49 -9.30 11.20 -10.55 -0.12 -9.42 16 16 C 0.22 3.67 7.63 -155.56 -1.19 2.48 16 17 C -0.07 -0.82 6.33 -91.77 -0.58 -1.40 16 18 C -0.18 -1.71 10.12 -26.69 -0.27 -1.98 16 19 C -0.16 -1.59 10.24 -26.69 -0.27 -1.86 16 20 N -0.56 -9.76 4.95 -7.01 -0.03 -9.80 16 21 H 0.42 6.57 4.36 -40.82 -0.18 6.39 16 22 H 0.04 0.70 7.42 -51.93 -0.39 0.31 16 23 H 0.10 2.26 5.38 -51.93 -0.28 1.98 16 24 H 0.04 0.75 5.76 -51.93 -0.30 0.45 16 25 H 0.28 6.05 8.31 -40.82 -0.34 5.71 16 26 H 0.18 3.41 8.06 -52.49 -0.42 2.99 16 27 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.09 0.91 7.30 -51.93 -0.38 0.53 16 29 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 267.90 15.07 4.04 4.04 Total: -1.00 -30.84 267.90 -6.83 -37.67 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -3.18 Total: 6.36 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -2.86 Total: 2.29 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.13 Total: -47.82 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.09 Total: -16.32 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.05 Total: 13.78 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.84 -6.83 -37.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341392712.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.840 kcal (2) G-P(sol) polarization free energy of solvation -30.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds