Wall clock time and date at job start Sun Mar 29 2020 22:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36881 * 120.00014 * 2 1 4 4 H 1.08000 * 119.99974 * 148.87324 * 3 2 1 5 5 C 1.39009 * 119.99851 * 328.86840 * 3 2 1 6 6 N 1.31400 * 119.99657 * 64.65387 * 5 3 2 7 7 Si 1.86795 * 120.00267 * 244.64441 * 5 3 2 8 8 H 1.48495 * 109.47095 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47028 * 120.00734 * 7 5 3 10 10 H 1.48503 * 109.47350 * 240.00579 * 7 5 3 11 11 C 1.34775 * 119.99752 * 180.02562 * 2 1 3 12 12 O 1.21727 * 120.00090 * 175.11041 * 11 2 1 13 13 C 1.46645 * 120.00249 * 355.10838 * 11 2 1 14 14 C 1.36773 * 126.85336 * 169.29025 * 13 11 2 15 15 N 1.33304 * 107.77981 * 179.69712 * 14 13 11 16 16 C 1.30870 * 109.70046 * 0.27077 * 15 14 13 17 17 C 1.50692 * 125.41271 * 179.97438 * 16 15 14 18 18 C 1.53006 * 117.49926 * 163.76731 * 17 16 15 19 19 C 1.53008 * 117.49977 * 95.10873 * 17 16 15 20 20 N 1.34549 * 109.17360 * 359.97438 * 16 15 14 21 21 H 0.97002 * 126.47424 * 179.97438 * 20 16 15 22 22 H 1.09006 * 109.46648 * 263.67470 * 1 2 3 23 23 H 1.08997 * 109.46989 * 23.67508 * 1 2 3 24 24 H 1.08998 * 109.47578 * 143.67540 * 1 2 3 25 25 H 0.97005 * 119.99678 * 179.97438 * 6 5 3 26 26 H 1.08001 * 126.11172 * 359.96900 * 14 13 11 27 27 H 1.08997 * 115.55322 * 309.43744 * 17 16 15 28 28 H 1.08997 * 117.49838 * 0.02562 * 18 17 16 29 29 H 1.08998 * 117.50057 * 145.02447 * 18 17 16 30 30 H 1.09004 * 117.49689 * 214.97997 * 19 17 16 31 31 H 1.08993 * 117.49741 * 359.97402 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1854 0.0000 4 1 3.1128 1.2527 0.4835 5 6 1.6045 2.3026 -0.6224 6 7 0.4950 2.8352 -0.1621 7 14 2.4496 3.0467 -2.1129 8 1 3.6727 2.2662 -2.4293 9 1 1.5257 3.0111 -3.2748 10 1 2.8220 4.4540 -1.8195 11 6 2.1389 -1.1672 -0.0005 12 8 3.3528 -1.1692 -0.0904 13 6 1.4096 -2.4349 0.1072 14 6 1.9163 -3.6913 -0.0813 15 7 0.9274 -4.5630 0.1168 16 6 -0.1737 -3.9209 0.4137 17 6 -1.5063 -4.5613 0.7053 18 6 -2.5679 -3.7010 1.3938 19 6 -1.8625 -4.8149 2.1716 20 7 0.0732 -2.5983 0.4172 21 1 -0.5657 -1.8929 0.6050 22 1 -0.3633 -0.1132 1.0215 23 1 -0.3633 0.9412 -0.4126 24 1 -0.3634 -0.8279 -0.6087 25 1 0.1150 3.6150 -0.5962 26 1 2.9365 -3.9341 -0.3397 27 1 -1.8482 -5.2906 -0.0290 28 1 -2.3025 -2.6718 1.6355 29 1 -3.6082 -3.8647 1.1128 30 1 -2.4390 -5.7109 2.4017 31 1 -1.1327 -4.5190 2.9252 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341392712.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:43 Heat of formation + Delta-G solvation = 59.220124 kcal Electronic energy + Delta-G solvation = -16387.066222 eV Core-core repulsion = 13670.921465 eV Total energy + Delta-G solvation = -2716.144756 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.28118 -40.01603 -37.89220 -36.86507 -34.63800 -33.36820 -30.71107 -28.49439 -27.07494 -24.79083 -23.46504 -22.98141 -21.88915 -20.71612 -19.48438 -18.43034 -17.32687 -16.93345 -16.58763 -16.31988 -16.31420 -15.48867 -15.15947 -14.74603 -14.54258 -14.08486 -13.83075 -13.48530 -13.13898 -12.81131 -12.49932 -12.43322 -12.17246 -11.66920 -11.50544 -11.24592 -11.11486 -10.70777 -10.47829 -10.05541 -9.44021 -9.14952 -5.81832 0.40160 1.14150 1.39003 1.52341 1.75899 1.91871 2.08436 2.30496 2.69258 2.79886 2.96486 3.30431 3.81960 3.86038 3.99844 4.10725 4.19700 4.29638 4.45011 4.58054 4.74282 4.77700 4.90379 5.01453 5.11544 5.21679 5.22231 5.53302 6.07693 6.27893 6.34995 6.89652 7.04371 7.22426 7.94917 7.98795 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035928 B = 0.007049 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.150312 B = 3971.254166 C = 4522.971822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.429 5.429 3 C -0.457 4.457 4 H 0.067 0.933 5 C 0.109 3.891 6 N -0.758 5.758 7 Si 0.897 3.103 8 H -0.288 1.288 9 H -0.257 1.257 10 H -0.262 1.262 11 C 0.485 3.515 12 O -0.623 6.623 13 C -0.061 4.061 14 C 0.027 3.973 15 N -0.510 5.510 16 C 0.250 3.750 17 C -0.094 4.094 18 C -0.162 4.162 19 C -0.151 4.151 20 N -0.547 5.547 21 H 0.430 0.570 22 H 0.057 0.943 23 H 0.095 0.905 24 H 0.065 0.935 25 H 0.297 0.703 26 H 0.177 0.823 27 H 0.151 0.849 28 H 0.087 0.913 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.957 -8.029 1.337 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.146 5.146 3 C -0.578 4.578 4 H 0.084 0.916 5 C -0.113 4.113 6 N -0.383 5.383 7 Si 0.718 3.282 8 H -0.213 1.213 9 H -0.181 1.181 10 H -0.187 1.187 11 C 0.277 3.723 12 O -0.512 6.512 13 C -0.178 4.178 14 C -0.126 4.126 15 N -0.230 5.230 16 C -0.014 4.014 17 C -0.114 4.114 18 C -0.200 4.200 19 C -0.189 4.189 20 N -0.159 5.159 21 H 0.277 0.723 22 H 0.075 0.925 23 H 0.114 0.886 24 H 0.084 0.916 25 H 0.108 0.892 26 H 0.195 0.805 27 H 0.168 0.832 28 H 0.106 0.894 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.516 -8.622 1.281 15.252 hybrid contribution 0.643 1.851 -0.437 2.008 sum -11.874 -6.771 0.844 13.694 Atomic orbital electron populations 1.22449 0.81638 1.04129 1.00768 1.43408 1.05585 1.04643 1.60959 1.18454 1.05430 0.88183 1.45742 0.91563 1.25739 0.94353 0.94605 0.96615 1.70505 1.20944 1.15874 1.31017 0.86529 0.81049 0.78150 0.82476 1.21343 1.18115 1.18653 1.17002 0.86768 0.82053 0.86472 1.90606 1.14718 1.86565 1.59319 1.21230 0.85015 0.96684 1.14909 1.22559 0.99594 0.86975 1.03436 1.70014 0.98651 1.33517 1.20792 1.23033 0.96841 0.79939 1.01567 1.20441 0.87260 1.04275 0.99435 1.23234 0.98479 0.96204 1.02056 1.23143 1.02535 1.01793 0.91409 1.44019 1.09253 1.09639 1.53012 0.72261 0.92511 0.88623 0.91631 0.89176 0.80541 0.83187 0.89423 0.84428 0.84889 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.14 8.50 127.77 1.09 3.23 16 2 N -0.43 -22.27 3.01 -663.47 -2.00 -24.27 16 3 C -0.46 -26.00 8.84 84.09 0.74 -25.25 16 4 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 5 C 0.11 5.43 4.68 84.94 0.40 5.83 16 6 N -0.76 -35.24 11.82 21.68 0.26 -34.99 16 7 Si 0.90 38.96 29.69 68.60 2.04 41.00 16 8 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 9 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 10 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 11 C 0.49 25.87 7.59 86.44 0.66 26.52 16 12 O -0.62 -38.30 16.75 -4.43 -0.07 -38.37 16 13 C -0.06 -2.67 6.59 40.00 0.26 -2.41 16 14 C 0.03 1.12 11.68 84.13 0.98 2.10 16 15 N -0.51 -18.98 11.20 -187.28 -2.10 -21.08 16 16 C 0.25 7.80 7.63 138.17 1.05 8.86 16 17 C -0.09 -1.92 6.33 -11.54 -0.07 -1.99 16 18 C -0.16 -2.37 10.12 30.62 0.31 -2.06 16 19 C -0.15 -2.44 10.24 30.62 0.31 -2.12 16 20 N -0.55 -18.56 4.95 -176.09 -0.87 -19.43 16 21 H 0.43 12.58 4.36 -92.71 -0.40 12.18 16 22 H 0.06 2.05 7.42 -2.38 -0.02 2.03 16 23 H 0.10 4.03 5.38 -2.39 -0.01 4.01 16 24 H 0.07 2.29 5.76 -2.39 -0.01 2.27 16 25 H 0.30 12.10 8.31 -92.70 -0.77 11.33 16 26 H 0.18 7.12 8.06 -2.91 -0.02 7.10 16 27 H 0.15 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.09 1.39 7.30 -2.39 -0.02 1.38 16 29 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -69.86 267.90 3.74 -66.12 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.76 Total: 18.31 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 5.73 Total: 12.71 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -4.71 Total: -99.76 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.07 Total: -38.37 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.04 Total: 41.00 kcal Total: -69.86 3.74 -66.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341392712.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.340 kcal (2) G-P(sol) polarization free energy of solvation -69.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds