Wall clock time and date at job start Sun Mar 29 2020 21:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31798 * 119.08470 * 2 1 4 4 C 1.32496 * 120.99227 * 179.97438 * 3 2 1 5 5 C 1.38221 * 119.18315 * 359.97438 * 4 3 2 6 6 C 1.39497 * 118.33441 * 0.25213 * 5 4 3 7 7 N 1.39043 * 120.52147 * 179.72099 * 6 5 4 8 8 C 1.34781 * 120.00244 * 174.93388 * 7 6 5 9 9 O 1.21269 * 119.99769 * 5.08186 * 8 7 6 10 10 C 1.50695 * 120.00293 * 185.08056 * 8 7 6 11 11 C 1.53004 * 109.47215 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47215 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00140 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99981 * 179.97438 * 12 11 10 15 15 N 1.31506 * 119.99756 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99783 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47360 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47008 * 120.00478 * 16 14 12 19 19 H 1.48505 * 109.46895 * 240.00049 * 16 14 12 20 20 N 1.31741 * 119.08807 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.47262 * 90.00361 * 1 2 3 22 22 H 1.08999 * 109.46964 * 210.00264 * 1 2 3 23 23 H 1.09002 * 109.47087 * 330.00220 * 1 2 3 24 24 H 1.07998 * 120.41180 * 180.02562 * 4 3 2 25 25 H 1.07993 * 120.83571 * 179.97438 * 5 4 3 26 26 H 0.97003 * 120.00410 * 354.94471 * 7 6 5 27 27 H 1.09000 * 109.47219 * 299.99794 * 10 8 7 28 28 H 1.08998 * 109.47190 * 60.00136 * 10 8 7 29 29 H 1.09000 * 109.46728 * 299.99934 * 11 10 8 30 30 H 1.08998 * 109.47061 * 59.99897 * 11 10 8 31 31 H 0.97004 * 120.00231 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1477 1.1518 0.0000 4 6 3.4719 1.1959 0.0005 5 6 4.1857 0.0122 0.0016 6 6 3.4761 -1.1888 -0.0033 7 7 4.1482 -2.4060 -0.0083 8 6 3.4561 -3.5584 0.0901 9 8 2.2436 -3.5393 0.0901 10 6 4.1890 -4.8705 0.2001 11 6 3.1767 -6.0136 0.2974 12 6 3.9096 -7.3256 0.4080 13 1 4.9894 -7.3425 0.4092 14 6 3.2015 -8.5045 0.5088 15 7 1.8866 -8.4838 0.5078 16 14 4.1101 -10.1308 0.6466 17 1 5.5741 -9.8834 0.6240 18 1 3.7399 -10.7982 1.9205 19 1 3.7384 -11.0037 -0.4958 20 7 2.1475 -1.1513 0.0005 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 3.9873 2.1450 0.0009 25 1 5.2656 0.0170 0.0016 26 1 5.1151 -2.4259 -0.0824 27 1 4.8135 -5.0129 -0.6819 28 1 4.8159 -4.8629 1.0917 29 1 2.5519 -5.8714 1.1792 30 1 2.5502 -6.0210 -0.5945 31 1 1.3884 -9.3131 0.5783 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361821514.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:01 Heat of formation + Delta-G solvation = 10.908124 kcal Electronic energy + Delta-G solvation = -15641.723853 eV Core-core repulsion = 12923.484131 eV Total energy + Delta-G solvation = -2718.239722 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.18480 -39.18892 -35.33898 -33.56908 -33.34973 -31.99141 -30.80408 -28.46810 -26.15109 -24.21981 -22.80281 -21.65628 -19.99553 -17.80877 -17.46433 -16.59440 -15.66499 -15.59190 -15.45560 -14.69338 -14.59154 -14.35794 -13.39842 -13.20043 -12.98445 -12.37906 -12.30339 -12.23174 -11.27815 -11.25381 -10.96693 -10.78832 -10.62406 -10.04840 -9.92753 -9.83795 -9.61307 -9.15254 -8.72399 -8.69175 -8.36772 -6.00277 -4.05265 0.91674 1.18656 2.90103 3.08421 3.30232 3.37558 3.40477 3.88889 4.03149 4.20321 4.44093 4.67507 4.99805 5.20692 5.31374 5.35003 5.44116 5.60279 5.75045 5.88198 6.08494 6.08821 6.21391 6.64536 6.71944 6.93896 7.52821 7.69014 7.77985 8.00806 8.23679 8.32527 8.57033 9.02787 9.58760 11.10662 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.054592 B = 0.004617 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.770899 B = 6062.488529 C = 6545.963791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.346 3.654 3 N -0.553 5.553 4 C 0.169 3.831 5 C -0.282 4.282 6 C 0.414 3.586 7 N -0.664 5.664 8 C 0.495 3.505 9 O -0.457 6.457 10 C -0.127 4.127 11 C 0.036 3.964 12 C -0.529 4.529 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.888 5.888 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 N -0.512 5.512 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.167 0.833 25 H 0.145 0.855 26 H 0.418 0.582 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.514 17.661 -1.172 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.078 3.922 3 N -0.271 5.271 4 C 0.005 3.995 5 C -0.308 4.308 6 C 0.173 3.827 7 N -0.312 5.312 8 C 0.282 3.718 9 O -0.322 6.322 10 C -0.167 4.167 11 C -0.002 4.002 12 C -0.567 4.567 13 H 0.075 0.925 14 C -0.143 4.143 15 N -0.527 5.527 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 N -0.234 5.234 21 H 0.104 0.896 22 H 0.108 0.892 23 H 0.102 0.898 24 H 0.184 0.816 25 H 0.163 0.837 26 H 0.255 0.745 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.483 17.367 -1.138 17.749 hybrid contribution 2.110 -0.926 0.023 2.305 sum 5.593 16.441 -1.114 17.402 Atomic orbital electron populations 1.20569 0.85656 1.04165 1.03892 1.23252 0.98195 0.82514 0.88265 1.68261 1.09974 1.30295 1.18585 1.22905 0.89570 0.97809 0.89241 1.22235 1.02345 0.92989 1.13262 1.18891 0.89121 0.86385 0.88267 1.44240 1.11187 1.03798 1.71961 1.22079 0.89101 0.85167 0.75429 1.90792 1.13650 1.85980 1.41827 1.21943 1.01133 0.90779 1.02820 1.18939 0.92962 0.89520 0.98771 1.21215 0.92969 0.91294 1.51219 0.92471 1.25023 0.94814 0.99265 0.95224 1.70003 1.05578 1.27248 1.49832 0.86524 0.79871 0.83817 0.77675 1.19735 1.20978 1.20981 1.68382 1.07214 1.29987 1.17772 0.89633 0.89220 0.89774 0.81567 0.83718 0.74531 0.89787 0.89746 0.95657 0.95634 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.32 36.01 0.37 -0.65 16 2 C 0.35 5.27 7.64 -157.24 -1.20 4.07 16 3 N -0.55 -7.51 10.33 -10.79 -0.11 -7.62 16 4 C 0.17 1.82 11.29 -17.27 -0.20 1.63 16 5 C -0.28 -3.09 10.04 -39.12 -0.39 -3.48 16 6 C 0.41 6.27 7.45 -154.40 -1.15 5.12 16 7 N -0.66 -9.52 5.38 -11.28 -0.06 -9.58 16 8 C 0.49 9.46 7.79 -10.99 -0.09 9.37 16 9 O -0.46 -10.84 14.29 5.57 0.08 -10.76 16 10 C -0.13 -2.46 5.64 -27.88 -0.16 -2.61 16 11 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 12 C -0.53 -14.72 9.11 -34.44 -0.31 -15.04 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.15 13.28 55.43 0.74 -26.41 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 N -0.51 -9.13 7.95 -9.89 -0.08 -9.21 16 21 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 25 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 26 H 0.42 4.04 8.72 -40.82 -0.36 3.69 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.03 0.74 8.10 -51.93 -0.42 0.31 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 278.90 15.07 4.20 4.20 Total: -1.00 -35.93 278.90 -7.29 -43.23 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -3.70 Total: -1.03 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -3.34 Total: 0.81 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.49 Total: -52.83 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -35.93 -7.29 -43.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361821514.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.135 kcal (2) G-P(sol) polarization free energy of solvation -35.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds