Wall clock time and date at job start Sun Mar 29 2020 21:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31798 * 119.08470 * 2 1 4 4 C 1.32496 * 120.99227 * 179.97438 * 3 2 1 5 5 C 1.38221 * 119.18315 * 359.97438 * 4 3 2 6 6 C 1.39497 * 118.33441 * 0.25213 * 5 4 3 7 7 N 1.39043 * 120.52147 * 179.72099 * 6 5 4 8 8 C 1.34781 * 120.00244 * 174.93388 * 7 6 5 9 9 O 1.21269 * 119.99769 * 5.08186 * 8 7 6 10 10 C 1.50695 * 120.00293 * 185.08056 * 8 7 6 11 11 C 1.53004 * 109.47215 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47215 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00140 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99981 * 179.97438 * 12 11 10 15 15 N 1.31506 * 119.99756 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99783 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47360 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47008 * 120.00478 * 16 14 12 19 19 H 1.48505 * 109.46895 * 240.00049 * 16 14 12 20 20 N 1.31741 * 119.08807 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.47262 * 90.00361 * 1 2 3 22 22 H 1.08999 * 109.46964 * 210.00264 * 1 2 3 23 23 H 1.09002 * 109.47087 * 330.00220 * 1 2 3 24 24 H 1.07998 * 120.41180 * 180.02562 * 4 3 2 25 25 H 1.07993 * 120.83571 * 179.97438 * 5 4 3 26 26 H 0.97003 * 120.00410 * 354.94471 * 7 6 5 27 27 H 1.09000 * 109.47219 * 299.99794 * 10 8 7 28 28 H 1.08998 * 109.47190 * 60.00136 * 10 8 7 29 29 H 1.09000 * 109.46728 * 299.99934 * 11 10 8 30 30 H 1.08998 * 109.47061 * 59.99897 * 11 10 8 31 31 H 0.97004 * 120.00231 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1477 1.1518 0.0000 4 6 3.4719 1.1959 0.0005 5 6 4.1857 0.0122 0.0016 6 6 3.4761 -1.1888 -0.0033 7 7 4.1482 -2.4060 -0.0083 8 6 3.4561 -3.5584 0.0901 9 8 2.2436 -3.5393 0.0901 10 6 4.1890 -4.8705 0.2001 11 6 3.1767 -6.0136 0.2974 12 6 3.9096 -7.3256 0.4080 13 1 4.9894 -7.3425 0.4092 14 6 3.2015 -8.5045 0.5088 15 7 1.8866 -8.4838 0.5078 16 14 4.1101 -10.1308 0.6466 17 1 5.5741 -9.8834 0.6240 18 1 3.7399 -10.7982 1.9205 19 1 3.7384 -11.0037 -0.4958 20 7 2.1475 -1.1513 0.0005 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 3.9873 2.1450 0.0009 25 1 5.2656 0.0170 0.0016 26 1 5.1151 -2.4259 -0.0824 27 1 4.8135 -5.0129 -0.6819 28 1 4.8159 -4.8629 1.0917 29 1 2.5519 -5.8714 1.1792 30 1 2.5502 -6.0210 -0.5945 31 1 1.3884 -9.3131 0.5783 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361821514.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:01 Heat of formation + Delta-G solvation = -14.765232 kcal Electronic energy + Delta-G solvation = -15642.837133 eV Core-core repulsion = 12923.484131 eV Total energy + Delta-G solvation = -2719.353002 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.27446 -40.58007 -36.63902 -35.57458 -34.39574 -33.41248 -32.49102 -29.46522 -27.99980 -25.54201 -23.98690 -23.26009 -21.47617 -19.08681 -18.82016 -18.27028 -17.13940 -16.89707 -16.50816 -16.36446 -16.00303 -15.54163 -14.97516 -14.46655 -14.23522 -14.11888 -13.60854 -13.27854 -13.24953 -12.86971 -12.49563 -12.45202 -11.94653 -11.77717 -11.65470 -11.31651 -11.12393 -11.03001 -10.58327 -9.94896 -9.76786 -8.18642 -6.32840 -0.10388 0.18716 1.42832 1.44099 1.57254 1.66173 1.76264 2.42757 2.84925 3.03130 3.15098 3.25119 3.72835 3.95822 4.21957 4.37339 4.45531 4.51452 4.51772 4.66509 4.74394 4.99978 5.03770 5.18162 5.48892 5.59491 5.60148 5.83916 5.85771 6.15451 6.43408 6.85722 7.08004 7.33851 7.37862 8.94342 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.054592 B = 0.004617 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.770899 B = 6062.488529 C = 6545.963791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.323 3.677 3 N -0.557 5.557 4 C 0.167 3.833 5 C -0.254 4.254 6 C 0.379 3.621 7 N -0.644 5.644 8 C 0.500 3.500 9 O -0.517 6.517 10 C -0.113 4.113 11 C 0.040 3.960 12 C -0.541 4.541 13 H 0.080 0.920 14 C -0.007 4.007 15 N -0.938 5.938 16 Si 0.974 3.026 17 H -0.250 1.250 18 H -0.282 1.282 19 H -0.282 1.282 20 N -0.564 5.564 21 H 0.093 0.907 22 H 0.070 0.930 23 H 0.104 0.896 24 H 0.216 0.784 25 H 0.193 0.807 26 H 0.441 0.559 27 H 0.114 0.886 28 H 0.113 0.887 29 H -0.018 1.018 30 H -0.017 1.017 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.963 18.993 -1.223 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.055 3.945 3 N -0.276 5.276 4 C 0.003 3.997 5 C -0.280 4.280 6 C 0.140 3.860 7 N -0.294 5.294 8 C 0.288 3.712 9 O -0.388 6.388 10 C -0.153 4.153 11 C 0.002 3.998 12 C -0.579 4.579 13 H 0.098 0.902 14 C -0.205 4.205 15 N -0.579 5.579 16 Si 0.798 3.202 17 H -0.174 1.174 18 H -0.208 1.208 19 H -0.208 1.208 20 N -0.286 5.286 21 H 0.112 0.888 22 H 0.089 0.911 23 H 0.123 0.877 24 H 0.232 0.768 25 H 0.210 0.790 26 H 0.283 0.717 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.000 1.000 30 H 0.001 0.999 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.008 18.755 -1.194 20.057 hybrid contribution 1.056 -1.190 0.033 1.591 sum 8.065 17.565 -1.161 19.363 Atomic orbital electron populations 1.20601 0.84770 1.04212 1.04437 1.23586 0.99174 0.82539 0.89194 1.68330 1.11701 1.29269 1.18280 1.23799 0.88691 0.99774 0.87434 1.22679 1.04473 0.90904 1.09915 1.19303 0.89021 0.87553 0.90164 1.43724 1.12065 1.02523 1.71065 1.21906 0.88293 0.86426 0.74597 1.90782 1.16103 1.86969 1.44948 1.21689 0.99449 0.88614 1.05541 1.18718 0.93670 0.92620 0.94771 1.21733 0.94122 0.91805 1.50247 0.90227 1.26141 0.95586 1.04030 0.94707 1.70187 1.07856 1.28458 1.51359 0.85267 0.79407 0.78066 0.77455 1.17370 1.20777 1.20765 1.68269 1.09386 1.31785 1.19177 0.88838 0.91060 0.87705 0.76755 0.78995 0.71721 0.86795 0.86899 0.99991 0.99895 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.07 10.32 71.24 0.73 -1.34 16 2 C 0.32 9.90 7.64 138.76 1.06 10.96 16 3 N -0.56 -14.14 10.33 -188.07 -1.94 -16.08 16 4 C 0.17 2.96 11.29 84.59 0.96 3.92 16 5 C -0.25 -4.60 10.04 22.57 0.23 -4.37 16 6 C 0.38 10.97 7.45 132.98 0.99 11.96 16 7 N -0.64 -17.45 5.38 -308.00 -1.66 -19.11 16 8 C 0.50 19.32 7.79 87.65 0.68 20.00 16 9 O -0.52 -26.05 14.29 -2.99 -0.04 -26.09 16 10 C -0.11 -4.32 5.64 29.85 0.17 -4.15 16 11 C 0.04 2.19 4.26 29.85 0.13 2.32 16 12 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 13 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 14 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 15 N -0.94 -59.53 13.28 21.45 0.28 -59.24 16 16 Si 0.97 43.86 29.54 68.60 2.03 45.88 16 17 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 20 N -0.56 -20.54 7.95 -185.20 -1.47 -22.01 16 21 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 22 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.22 1.63 8.06 -2.91 -0.02 1.60 16 25 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 26 H 0.44 7.07 8.72 -92.71 -0.81 6.26 16 27 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 28 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 29 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 30 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 31 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -84.32 278.90 3.17 -81.15 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 0.34 Total: 6.18 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 5.64 Total: 9.33 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -4.79 Total: -116.44 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.04 Total: -26.09 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -84.32 3.17 -81.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361821514.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.384 kcal (2) G-P(sol) polarization free energy of solvation -84.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds