Wall clock time and date at job start Sun Mar 29 2020 22:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34545 * 126.47514 * 2 1 4 4 N 1.30871 * 109.17280 * 179.73682 * 3 2 1 5 5 C 1.33300 * 109.69847 * 359.97438 * 4 3 2 6 6 C 1.36774 * 107.78468 * 0.02562 * 5 4 3 7 7 C 1.46639 * 126.85697 * 180.02562 * 6 5 4 8 8 O 1.21715 * 120.00381 * 186.69541 * 7 6 5 9 9 N 1.34773 * 119.99755 * 6.69100 * 7 6 5 10 10 C 1.36886 * 120.00182 * 185.79281 * 9 7 6 11 11 H 1.08001 * 119.99952 * 344.24315 * 10 9 7 12 12 C 1.39014 * 119.99957 * 164.24477 * 10 9 7 13 13 N 1.31388 * 120.00392 * 341.82642 * 12 10 9 14 14 Si 1.86807 * 119.99568 * 161.81746 * 12 10 9 15 15 H 1.48493 * 109.47261 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46840 * 120.00301 * 14 12 10 17 17 H 1.48497 * 109.46948 * 240.00172 * 14 12 10 18 18 C 1.46501 * 120.00099 * 5.79381 * 9 7 6 19 19 C 1.53003 * 117.50094 * 136.47710 * 18 9 7 20 20 C 1.53000 * 59.99975 * 252.51146 * 19 18 9 21 21 H 1.09006 * 109.46998 * 90.65866 * 1 2 3 22 22 H 1.09003 * 109.47654 * 210.65867 * 1 2 3 23 23 H 1.08998 * 109.47195 * 330.66467 * 1 2 3 24 24 H 1.07995 * 125.41149 * 359.70306 * 3 2 1 25 25 H 1.08003 * 126.10974 * 180.02562 * 5 4 3 26 26 H 0.96998 * 120.00379 * 185.09822 * 13 12 10 27 27 H 1.09004 * 115.55084 * 282.18895 * 18 9 7 28 28 H 1.08998 * 117.49499 * 0.02562 * 19 18 9 29 29 H 1.08999 * 117.49735 * 145.01739 * 19 18 9 30 30 H 1.08997 * 117.49554 * 252.50673 * 20 19 18 31 31 H 1.08998 * 117.49661 * 107.49099 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2648 1.0819 0.0000 4 7 3.5143 0.6927 0.0057 5 6 3.5700 -0.6392 0.0101 6 6 2.2863 -1.1110 0.0064 7 6 1.8655 -2.5157 0.0097 8 8 0.6885 -2.7988 -0.1171 9 7 2.7820 -3.4934 0.1530 10 6 2.4075 -4.8049 0.0376 11 1 1.3629 -5.0746 0.0871 12 6 3.3718 -5.7898 -0.1432 13 7 4.5754 -5.4628 -0.5564 14 14 2.9564 -7.5781 0.2016 15 1 1.5450 -7.6805 0.6518 16 1 3.1395 -8.3765 -1.0371 17 1 3.8542 -8.0990 1.2635 18 6 4.1792 -3.1524 0.4322 19 6 4.9080 -3.9750 1.4968 20 6 4.4962 -2.5317 1.7943 21 1 -0.3633 -0.0118 -1.0277 22 1 -0.3634 -0.8840 0.5240 23 1 -0.3633 0.8959 0.5035 24 1 1.9291 2.1083 -0.0046 25 1 4.4684 -1.2386 0.0156 26 1 5.2254 -6.1554 -0.7535 27 1 4.7598 -2.8098 -0.4244 28 1 4.3480 -4.7700 1.9890 29 1 5.9682 -4.1739 1.3405 30 1 5.2857 -1.7812 1.8338 31 1 3.6653 -2.3772 2.4826 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362618556.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:32 Heat of formation + Delta-G solvation = 65.093355 kcal Electronic energy + Delta-G solvation = -17038.550468 eV Core-core repulsion = 14322.660394 eV Total energy + Delta-G solvation = -2715.890074 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.00970 -40.36077 -38.06932 -34.89599 -34.80594 -33.28968 -30.85542 -27.88884 -27.09009 -24.24904 -23.41314 -22.89343 -21.81493 -20.38828 -19.11700 -18.09696 -17.19903 -17.02440 -16.62325 -15.99312 -15.88435 -15.15456 -14.90324 -14.74371 -14.06413 -13.88230 -13.69319 -13.48629 -13.14648 -12.95950 -12.43977 -12.18280 -12.12716 -11.81022 -11.23701 -10.93893 -10.62911 -10.52432 -10.34041 -9.76783 -9.42617 -8.34366 -5.89645 0.55868 1.39000 1.42039 1.53457 1.81510 2.04924 2.28344 2.47794 2.93310 3.08660 3.23425 3.78518 3.90117 4.05000 4.17101 4.31789 4.39895 4.42576 4.49468 4.66539 4.76891 4.84629 5.13260 5.26542 5.32283 5.43526 5.49170 5.63530 6.01861 6.34533 6.45720 7.02206 7.12893 7.38761 7.96318 8.66242 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.035959 B = 0.009121 C = 0.007712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.475907 B = 3069.120026 C = 3629.904361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.441 5.441 3 C 0.201 3.799 4 N -0.526 5.526 5 C 0.010 3.990 6 C -0.082 4.082 7 C 0.495 3.505 8 O -0.639 6.639 9 N -0.406 5.406 10 C -0.353 4.353 11 H 0.074 0.926 12 C 0.017 3.983 13 N -0.860 5.860 14 Si 0.981 3.019 15 H -0.278 1.278 16 H -0.273 1.273 17 H -0.263 1.263 18 C 0.098 3.902 19 C -0.115 4.115 20 C -0.185 4.185 21 H 0.079 0.921 22 H 0.067 0.933 23 H 0.130 0.870 24 H 0.258 0.742 25 H 0.191 0.809 26 H 0.278 0.722 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.095 8.576 3.085 9.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.123 5.123 3 C -0.080 4.080 4 N -0.245 5.245 5 C -0.142 4.142 6 C -0.198 4.198 7 C 0.287 3.713 8 O -0.530 6.530 9 N -0.121 5.121 10 C -0.481 4.481 11 H 0.092 0.908 12 C -0.189 4.189 13 N -0.495 5.495 14 Si 0.804 3.196 15 H -0.203 1.203 16 H -0.198 1.198 17 H -0.188 1.188 18 C -0.006 4.006 19 C -0.153 4.153 20 C -0.223 4.223 21 H 0.097 0.903 22 H 0.086 0.914 23 H 0.149 0.851 24 H 0.274 0.726 25 H 0.207 0.793 26 H 0.088 0.912 27 H 0.121 0.879 28 H 0.085 0.915 29 H 0.121 0.879 30 H 0.141 0.859 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.057 8.823 3.033 9.330 hybrid contribution -1.057 -1.718 -0.184 2.025 sum -1.001 7.105 2.849 7.721 Atomic orbital electron populations 1.22260 0.74513 1.05521 1.04361 1.45407 1.08993 1.05493 1.52381 1.25960 0.85055 0.94628 1.02391 1.70126 1.20486 1.11877 1.22057 1.23530 0.96193 0.91304 1.03222 1.20880 0.92311 0.88815 1.17840 1.17029 0.85656 0.84076 0.84588 1.90539 1.18408 1.84472 1.59545 1.42966 1.06539 1.04784 1.57772 1.19568 0.94342 0.81735 1.52418 0.90771 1.25858 0.94756 1.03213 0.95040 1.70057 1.05473 1.35324 1.38676 0.85078 0.78371 0.77535 0.78595 1.20311 1.19844 1.18752 1.21198 0.83148 1.04528 0.91762 1.22704 1.00069 0.92518 0.99989 1.23651 1.03209 0.97665 0.97796 0.90289 0.91366 0.85144 0.72640 0.79258 0.91209 0.87949 0.91512 0.87869 0.85869 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.05 10.61 127.77 1.36 3.40 16 2 N -0.44 -15.12 3.17 -539.78 -1.71 -16.83 16 3 C 0.20 5.72 12.53 180.31 2.26 7.98 16 4 N -0.53 -18.48 11.20 -199.45 -2.23 -20.71 16 5 C 0.01 0.38 9.32 84.13 0.78 1.17 16 6 C -0.08 -3.56 6.68 40.00 0.27 -3.29 16 7 C 0.50 26.14 7.52 86.44 0.65 26.79 16 8 O -0.64 -37.05 14.62 -4.40 -0.06 -37.11 16 9 N -0.41 -21.51 2.93 -617.64 -1.81 -23.32 16 10 C -0.35 -20.00 9.11 84.09 0.77 -19.24 16 11 H 0.07 4.55 7.31 -2.91 -0.02 4.53 16 12 C 0.02 0.88 4.03 84.95 0.34 1.22 16 13 N -0.86 -42.83 9.95 21.68 0.22 -42.62 16 14 Si 0.98 41.15 29.59 68.60 2.03 43.18 16 15 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 17 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 18 C 0.10 4.38 2.35 44.99 0.11 4.49 16 19 C -0.12 -4.69 7.64 30.60 0.23 -4.46 16 20 C -0.19 -6.85 7.96 30.59 0.24 -6.61 16 21 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 22 H 0.07 2.37 6.68 -2.39 -0.02 2.35 16 23 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.26 4.01 8.06 -2.91 -0.02 3.99 16 25 H 0.19 7.30 3.72 -2.91 -0.01 7.29 16 26 H 0.28 12.84 8.32 -92.71 -0.77 12.07 16 27 H 0.10 4.62 6.96 -2.38 -0.02 4.61 16 28 H 0.07 3.01 7.25 -2.39 -0.02 2.99 16 29 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 30 H 0.12 3.78 7.85 -2.39 -0.02 3.76 16 31 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -69.59 259.24 4.58 -65.02 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 1.15 Total: 20.94 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 7.01 Total: 11.46 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -5.54 Total: -103.48 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -0.06 Total: -37.11 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -69.59 4.58 -65.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362618556.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.108 kcal (2) G-P(sol) polarization free energy of solvation -69.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds