Wall clock time and date at job start Sun Mar 29 2020 22:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36721 * 119.99882 * 2 1 4 4 H 1.08000 * 120.00062 * 136.41034 * 3 2 1 5 5 C 1.39114 * 119.99930 * 316.41564 * 3 2 1 6 6 N 1.31330 * 119.99728 * 169.82447 * 5 3 2 7 7 Si 1.86794 * 119.99972 * 349.82388 * 5 3 2 8 8 H 1.48499 * 109.47462 * 92.16017 * 7 5 3 9 9 H 1.48500 * 109.47042 * 212.16269 * 7 5 3 10 10 H 1.48504 * 109.47440 * 332.15867 * 7 5 3 11 11 C 1.34775 * 120.00265 * 180.02562 * 2 1 3 12 12 O 1.21805 * 119.99557 * 179.97438 * 11 2 1 13 13 C 1.41663 * 119.99866 * 359.71897 * 11 2 1 14 14 C 1.35422 * 119.99908 * 185.38795 * 13 11 2 15 15 C 1.46355 * 119.99934 * 352.66734 * 14 13 11 16 16 C 1.38465 * 126.52309 * 250.46710 * 15 14 13 17 17 C 1.39158 * 107.63862 * 179.97438 * 16 15 14 18 18 N 1.31000 * 108.84249 * 0.02562 * 17 16 15 19 19 N 1.36834 * 126.51975 * 70.15631 * 15 14 13 20 20 C 1.46496 * 126.15995 * 359.97438 * 19 15 14 21 21 H 1.09006 * 109.46823 * 264.44733 * 1 2 3 22 22 H 1.08998 * 109.47801 * 24.44553 * 1 2 3 23 23 H 1.08998 * 109.47385 * 144.45329 * 1 2 3 24 24 H 0.97003 * 119.99640 * 180.02562 * 6 5 3 25 25 H 1.07992 * 119.99908 * 5.38823 * 13 11 2 26 26 H 1.07997 * 120.00031 * 172.66806 * 14 13 11 27 27 H 1.07998 * 126.17661 * 359.96594 * 16 15 14 28 28 H 1.07998 * 125.57854 * 179.97438 * 17 16 15 29 29 H 1.08999 * 109.47347 * 86.66614 * 20 19 15 30 30 H 1.08994 * 109.47848 * 206.67358 * 20 19 15 31 31 H 1.09000 * 109.46821 * 326.67640 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1485 1.1840 0.0000 4 1 3.0052 1.3130 0.6449 5 6 1.7405 2.2227 -0.8306 6 7 2.2639 3.4192 -0.6912 7 14 0.4484 1.9157 -2.1441 8 1 -0.8976 2.2189 -1.5949 9 1 0.7143 2.7907 -3.3141 10 1 0.5013 0.4933 -2.5677 11 6 2.1389 -1.1672 -0.0005 12 8 3.3569 -1.1670 -0.0010 13 6 1.4306 -2.3940 0.0049 14 6 2.1038 -3.5639 0.1146 15 6 3.5665 -3.5740 0.0658 16 6 4.3534 -4.0672 -0.9611 17 6 5.6842 -3.8783 -0.6006 18 7 5.7263 -3.3044 0.5762 19 7 4.4164 -3.0922 1.0239 20 6 4.0265 -2.4690 2.2910 21 1 -0.3633 -0.0994 1.0229 22 1 -0.3634 0.9355 -0.4252 23 1 -0.3634 -0.8361 -0.5974 24 1 1.9791 4.1435 -1.2701 25 1 0.3539 -2.3962 -0.0783 26 1 1.5612 -4.4896 0.2379 27 1 3.9985 -4.5174 -1.8764 28 1 6.5418 -4.1597 -1.1936 29 1 3.8807 -3.2415 3.0461 30 1 4.8110 -1.7861 2.6167 31 1 3.0975 -1.9160 2.1531 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491348771.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:20 Heat of formation + Delta-G solvation = 98.151317 kcal Electronic energy + Delta-G solvation = -16757.764442 eV Core-core repulsion = 14043.307869 eV Total energy + Delta-G solvation = -2714.456573 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.41914 -38.85414 -35.14835 -33.21415 -32.39482 -32.04140 -28.87662 -26.61640 -26.21344 -25.47593 -22.59108 -20.42270 -19.96652 -17.98005 -17.19988 -16.84075 -15.92975 -15.34658 -14.76318 -14.39132 -13.89597 -13.55594 -13.30448 -13.15587 -12.74404 -12.51488 -12.32992 -12.05294 -11.97945 -11.73378 -11.42814 -10.92606 -10.38087 -10.19739 -10.01884 -9.35954 -9.14337 -8.79718 -8.22283 -7.79955 -7.70008 -6.44995 -4.09952 1.38623 2.53140 2.97017 3.16284 3.17926 3.22257 3.41514 4.05625 4.17971 4.46385 4.95460 4.97399 5.14303 5.43756 5.56070 5.60365 5.69570 5.78198 5.99808 6.01972 6.10170 6.14724 6.21673 6.36732 6.50198 6.60894 7.26439 7.50729 7.62427 8.20858 8.34507 8.43713 8.87898 9.19411 9.68580 10.66067 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.034844 B = 0.008063 C = 0.007686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.388021 B = 3471.977383 C = 3642.069047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.460 5.460 3 C -0.309 4.309 4 H 0.104 0.896 5 C 0.056 3.944 6 N -0.866 5.866 7 Si 0.894 3.106 8 H -0.275 1.275 9 H -0.288 1.288 10 H -0.264 1.264 11 C 0.470 3.530 12 O -0.546 6.546 13 C -0.161 4.161 14 C -0.060 4.060 15 C 0.146 3.854 16 C -0.277 4.277 17 C 0.038 3.962 18 N -0.304 5.304 19 N -0.329 5.329 20 C 0.115 3.885 21 H 0.053 0.947 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.276 0.724 25 H 0.130 0.870 26 H 0.140 0.860 27 H 0.138 0.862 28 H 0.173 0.827 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.903 -12.637 1.659 13.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.181 5.181 3 C -0.437 4.437 4 H 0.121 0.879 5 C -0.150 4.150 6 N -0.502 5.502 7 Si 0.722 3.278 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.189 1.189 11 C 0.262 3.738 12 O -0.429 6.429 13 C -0.183 4.183 14 C -0.083 4.083 15 C 0.017 3.983 16 C -0.306 4.306 17 C -0.146 4.146 18 N -0.127 5.127 19 N -0.110 5.110 20 C -0.026 4.026 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.147 0.853 26 H 0.158 0.842 27 H 0.156 0.844 28 H 0.190 0.810 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.534 -11.840 2.665 12.640 hybrid contribution -1.500 -0.011 -1.492 2.116 sum -5.035 -11.850 1.174 12.929 Atomic orbital electron populations 1.22123 0.83849 1.01543 1.01022 1.43634 1.03911 1.06081 1.64511 1.19032 1.13956 0.87549 1.23154 0.87865 1.25531 0.97711 0.95084 0.96665 1.69627 1.42142 1.00591 1.37803 0.86712 0.80492 0.79089 0.81518 1.20173 1.21510 1.18889 1.17144 0.88312 0.84200 0.84140 1.90831 1.12868 1.86516 1.52680 1.22744 1.00653 0.93923 1.01014 1.21569 0.89974 0.97844 0.98870 1.19835 0.90704 0.96562 0.91242 1.21417 0.92191 1.15774 1.01221 1.23320 0.97320 0.99598 0.94325 1.77113 0.98686 1.22065 1.14882 1.48550 1.02891 1.44004 1.15552 1.21667 1.02595 0.97189 0.81198 0.92826 0.91722 0.92488 0.91400 0.85275 0.84234 0.84411 0.81021 0.92201 0.89710 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.08 8.39 59.85 0.50 1.58 16 2 N -0.46 -10.84 2.53 -125.46 -0.32 -11.15 16 3 C -0.31 -8.65 9.33 -15.05 -0.14 -8.79 16 4 H 0.10 3.26 8.02 -52.49 -0.42 2.84 16 5 C 0.06 1.56 5.42 -17.44 -0.09 1.46 16 6 N -0.87 -25.13 13.95 55.50 0.77 -24.36 16 7 Si 0.89 20.56 24.69 -169.99 -4.20 16.36 16 8 H -0.27 -5.80 6.74 56.52 0.38 -5.42 16 9 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.26 -5.99 6.99 56.52 0.39 -5.60 16 11 C 0.47 10.59 6.20 -14.95 -0.09 10.49 16 12 O -0.55 -14.23 11.47 5.10 0.06 -14.17 16 13 C -0.16 -2.70 8.92 -39.28 -0.35 -3.05 16 14 C -0.06 -0.91 9.70 -37.32 -0.36 -1.27 16 15 C 0.15 2.69 4.63 -82.29 -0.38 2.31 16 16 C -0.28 -4.91 10.84 -39.16 -0.42 -5.33 16 17 C 0.04 0.67 11.96 -17.57 -0.21 0.46 16 18 N -0.30 -6.22 12.54 30.50 0.38 -5.84 16 19 N -0.33 -6.47 2.98 -64.07 -0.19 -6.66 16 20 C 0.12 1.96 10.31 59.84 0.62 2.58 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.06 1.29 3.41 -51.93 -0.18 1.11 16 23 H 0.06 0.88 6.35 -51.93 -0.33 0.55 16 24 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.13 1.71 6.16 -52.49 -0.32 1.38 16 26 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.17 2.40 8.06 -52.49 -0.42 1.98 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.08 1.51 5.83 -51.93 -0.30 1.21 16 LS Contribution 261.36 15.07 3.94 3.94 Total: -1.00 -34.32 261.36 -3.74 -38.06 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -3.25 Total: 3.38 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -0.94 Total: 0.44 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.65 Total: -48.00 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.06 Total: -14.17 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.20 Total: 16.36 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.32 -3.74 -38.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491348771.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.212 kcal (2) G-P(sol) polarization free energy of solvation -34.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds