Wall clock time and date at job start Sun Mar 29 2020 22:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36721 * 119.99882 * 2 1 4 4 H 1.08000 * 120.00062 * 136.41034 * 3 2 1 5 5 C 1.39114 * 119.99930 * 316.41564 * 3 2 1 6 6 N 1.31330 * 119.99728 * 169.82447 * 5 3 2 7 7 Si 1.86794 * 119.99972 * 349.82388 * 5 3 2 8 8 H 1.48499 * 109.47462 * 92.16017 * 7 5 3 9 9 H 1.48500 * 109.47042 * 212.16269 * 7 5 3 10 10 H 1.48504 * 109.47440 * 332.15867 * 7 5 3 11 11 C 1.34775 * 120.00265 * 180.02562 * 2 1 3 12 12 O 1.21805 * 119.99557 * 179.97438 * 11 2 1 13 13 C 1.41663 * 119.99866 * 359.71897 * 11 2 1 14 14 C 1.35422 * 119.99908 * 185.38795 * 13 11 2 15 15 C 1.46355 * 119.99934 * 352.66734 * 14 13 11 16 16 C 1.38465 * 126.52309 * 250.46710 * 15 14 13 17 17 C 1.39158 * 107.63862 * 179.97438 * 16 15 14 18 18 N 1.31000 * 108.84249 * 0.02562 * 17 16 15 19 19 N 1.36834 * 126.51975 * 70.15631 * 15 14 13 20 20 C 1.46496 * 126.15995 * 359.97438 * 19 15 14 21 21 H 1.09006 * 109.46823 * 264.44733 * 1 2 3 22 22 H 1.08998 * 109.47801 * 24.44553 * 1 2 3 23 23 H 1.08998 * 109.47385 * 144.45329 * 1 2 3 24 24 H 0.97003 * 119.99640 * 180.02562 * 6 5 3 25 25 H 1.07992 * 119.99908 * 5.38823 * 13 11 2 26 26 H 1.07997 * 120.00031 * 172.66806 * 14 13 11 27 27 H 1.07998 * 126.17661 * 359.96594 * 16 15 14 28 28 H 1.07998 * 125.57854 * 179.97438 * 17 16 15 29 29 H 1.08999 * 109.47347 * 86.66614 * 20 19 15 30 30 H 1.08994 * 109.47848 * 206.67358 * 20 19 15 31 31 H 1.09000 * 109.46821 * 326.67640 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1485 1.1840 0.0000 4 1 3.0052 1.3130 0.6449 5 6 1.7405 2.2227 -0.8306 6 7 2.2639 3.4192 -0.6912 7 14 0.4484 1.9157 -2.1441 8 1 -0.8976 2.2189 -1.5949 9 1 0.7143 2.7907 -3.3141 10 1 0.5013 0.4933 -2.5677 11 6 2.1389 -1.1672 -0.0005 12 8 3.3569 -1.1670 -0.0010 13 6 1.4306 -2.3940 0.0049 14 6 2.1038 -3.5639 0.1146 15 6 3.5665 -3.5740 0.0658 16 6 4.3534 -4.0672 -0.9611 17 6 5.6842 -3.8783 -0.6006 18 7 5.7263 -3.3044 0.5762 19 7 4.4164 -3.0922 1.0239 20 6 4.0265 -2.4690 2.2910 21 1 -0.3633 -0.0994 1.0229 22 1 -0.3634 0.9355 -0.4252 23 1 -0.3634 -0.8361 -0.5974 24 1 1.9791 4.1435 -1.2701 25 1 0.3539 -2.3962 -0.0783 26 1 1.5612 -4.4896 0.2379 27 1 3.9985 -4.5174 -1.8764 28 1 6.5418 -4.1597 -1.1936 29 1 3.8807 -3.2415 3.0461 30 1 4.8110 -1.7861 2.6167 31 1 3.0975 -1.9160 2.1531 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491348771.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:20 Heat of formation + Delta-G solvation = 72.574693 kcal Electronic energy + Delta-G solvation = -16758.873528 eV Core-core repulsion = 14043.307869 eV Total energy + Delta-G solvation = -2715.565659 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.84286 -40.52606 -36.90782 -34.69142 -34.17779 -33.63043 -30.33051 -28.24733 -27.60788 -27.17990 -24.17512 -21.81173 -21.49162 -19.57419 -19.03913 -18.38736 -17.62103 -16.87515 -16.27817 -15.94736 -15.51746 -14.98693 -14.81556 -14.59513 -14.39300 -14.17982 -13.83456 -13.67560 -13.36431 -13.13942 -12.88971 -12.70538 -12.21162 -11.81577 -11.59047 -11.09087 -10.81656 -10.34053 -9.73864 -9.60853 -9.16577 -8.51236 -6.23763 0.07528 1.14702 1.19030 1.33143 1.42903 1.88521 2.04997 2.16050 2.49833 2.85707 3.00830 3.73318 3.78905 4.09870 4.29593 4.32201 4.38480 4.48501 4.62113 4.69799 4.79502 4.80754 4.87092 5.08416 5.19558 5.32567 5.58542 5.93476 6.00255 6.27376 6.58795 6.92823 6.94623 7.25888 7.87868 8.65380 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.034844 B = 0.008063 C = 0.007686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.388021 B = 3471.977383 C = 3642.069047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.480 5.480 3 C -0.323 4.323 4 H 0.037 0.963 5 C -0.001 4.001 6 N -0.923 5.923 7 Si 0.968 3.032 8 H -0.237 1.237 9 H -0.297 1.297 10 H -0.252 1.252 11 C 0.470 3.530 12 O -0.594 6.594 13 C -0.179 4.179 14 C -0.022 4.022 15 C 0.122 3.878 16 C -0.286 4.286 17 C 0.031 3.969 18 N -0.350 5.350 19 N -0.345 5.345 20 C 0.115 3.885 21 H 0.080 0.920 22 H 0.052 0.948 23 H 0.101 0.899 24 H 0.279 0.721 25 H 0.178 0.822 26 H 0.200 0.800 27 H 0.166 0.834 28 H 0.203 0.797 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.095 -15.752 0.519 17.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.202 5.202 3 C -0.452 4.452 4 H 0.054 0.946 5 C -0.201 4.201 6 N -0.561 5.561 7 Si 0.792 3.208 8 H -0.161 1.161 9 H -0.225 1.225 10 H -0.176 1.176 11 C 0.264 3.736 12 O -0.479 6.479 13 C -0.201 4.201 14 C -0.043 4.043 15 C -0.008 4.008 16 C -0.316 4.316 17 C -0.151 4.151 18 N -0.173 5.173 19 N -0.126 5.126 20 C -0.026 4.026 21 H 0.098 0.902 22 H 0.070 0.930 23 H 0.119 0.881 24 H 0.088 0.912 25 H 0.195 0.805 26 H 0.216 0.784 27 H 0.183 0.817 28 H 0.220 0.780 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.755 -14.977 1.558 16.504 hybrid contribution -0.319 0.804 -1.047 1.359 sum -7.074 -14.173 0.510 15.849 Atomic orbital electron populations 1.22357 0.80284 1.02650 1.03664 1.43720 1.06037 1.04699 1.65728 1.18559 1.13398 0.90212 1.23041 0.94553 1.26455 1.00645 0.94239 0.98803 1.69785 1.44927 1.01910 1.39491 0.85561 0.78824 0.79176 0.77274 1.16150 1.22520 1.17560 1.18133 0.88094 0.85810 0.81603 1.90818 1.15462 1.87587 1.54034 1.22709 1.02628 0.91008 1.03716 1.22242 0.88171 0.99613 0.94321 1.20629 0.92649 0.96221 0.91256 1.21881 0.91971 1.15665 1.02034 1.23961 0.98949 0.98422 0.93798 1.77049 0.99879 1.23849 1.16549 1.48759 1.02990 1.44407 1.16448 1.21718 1.01177 0.98054 0.81694 0.90160 0.92973 0.88102 0.91168 0.80487 0.78353 0.81681 0.78023 0.88327 0.91472 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.74 8.39 127.77 1.07 2.81 16 2 N -0.48 -22.28 2.53 -669.00 -1.69 -23.97 16 3 C -0.32 -18.97 9.33 84.14 0.78 -18.19 16 4 H 0.04 2.54 8.02 -2.91 -0.02 2.51 16 5 C 0.00 -0.03 5.42 84.98 0.46 0.43 16 6 N -0.92 -56.37 13.95 21.69 0.30 -56.06 16 7 Si 0.97 41.87 24.69 68.60 1.69 43.57 16 8 H -0.24 -8.76 6.74 99.48 0.67 -8.09 16 9 H -0.30 -13.16 7.11 99.48 0.71 -12.45 16 10 H -0.25 -10.25 6.99 99.48 0.69 -9.56 16 11 C 0.47 20.63 6.20 85.09 0.53 21.16 16 12 O -0.59 -31.60 11.47 -4.68 -0.05 -31.65 16 13 C -0.18 -5.19 8.92 22.46 0.20 -4.99 16 14 C -0.02 -0.55 9.70 23.73 0.23 -0.32 16 15 C 0.12 4.20 4.63 40.53 0.19 4.39 16 16 C -0.29 -9.47 10.84 22.54 0.24 -9.23 16 17 C 0.03 1.09 11.96 85.04 1.02 2.10 16 18 N -0.35 -14.39 12.54 -57.41 -0.72 -15.11 16 19 N -0.34 -13.42 2.98 -356.62 -1.06 -14.48 16 20 C 0.11 3.95 10.31 127.77 1.32 5.27 16 21 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 22 H 0.05 1.88 3.41 -2.39 -0.01 1.87 16 23 H 0.10 2.46 6.35 -2.39 -0.02 2.45 16 24 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.18 3.41 6.16 -2.91 -0.02 3.39 16 26 H 0.20 2.72 8.06 -2.91 -0.02 2.70 16 27 H 0.17 4.36 8.06 -2.91 -0.02 4.33 16 28 H 0.20 5.36 8.06 -2.91 -0.02 5.34 16 29 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.07 2.59 5.83 -2.39 -0.01 2.58 16 Total: -1.00 -82.80 261.36 5.61 -77.19 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.09 Total: 17.09 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 6.04 Total: 3.43 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -3.17 Total: -109.62 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.05 Total: -31.65 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.69 Total: 43.57 kcal Total: -82.80 5.61 -77.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491348771.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.769 kcal (2) G-P(sol) polarization free energy of solvation -82.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds