Wall clock time and date at job start Sun Mar 29 2020 22:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36719 * 120.00054 * 2 1 4 4 H 1.07997 * 119.99641 * 203.65381 * 3 2 1 5 5 C 1.39111 * 119.99580 * 23.64605 * 3 2 1 6 6 N 1.31329 * 120.00352 * 15.29494 * 5 3 2 7 7 Si 1.86799 * 119.99647 * 195.29125 * 5 3 2 8 8 H 1.48503 * 109.47431 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47101 * 120.00368 * 7 5 3 10 10 H 1.48502 * 109.47267 * 240.00372 * 7 5 3 11 11 C 1.34778 * 120.00098 * 179.97438 * 2 1 3 12 12 O 1.21803 * 119.99956 * 179.97438 * 11 2 1 13 13 C 1.41663 * 119.99767 * 0.02562 * 11 2 1 14 14 C 1.35424 * 119.99705 * 180.02562 * 13 11 2 15 15 C 1.46353 * 120.00207 * 185.39436 * 14 13 11 16 16 C 1.38471 * 126.51618 * 5.38931 * 15 14 13 17 17 C 1.39162 * 107.63296 * 180.29797 * 16 15 14 18 18 N 1.30999 * 108.84000 * 359.73534 * 17 16 15 19 19 N 1.36831 * 126.52359 * 185.24169 * 15 14 13 20 20 C 1.46498 * 126.15656 * 359.97083 * 19 15 14 21 21 H 1.08996 * 109.46926 * 264.69560 * 1 2 3 22 22 H 1.08993 * 109.47174 * 24.69826 * 1 2 3 23 23 H 1.09009 * 109.46898 * 144.69664 * 1 2 3 24 24 H 0.96995 * 120.00250 * 180.02562 * 6 5 3 25 25 H 1.07997 * 120.00362 * 359.97438 * 13 11 2 26 26 H 1.08007 * 120.00250 * 5.38727 * 14 13 11 27 27 H 1.07992 * 126.18746 * 0.02882 * 16 15 14 28 28 H 1.07996 * 125.57944 * 179.74206 * 17 16 15 29 29 H 1.08990 * 109.46915 * 265.34434 * 20 19 15 30 30 H 1.08999 * 109.46848 * 25.34230 * 20 19 15 31 31 H 1.08997 * 109.47089 * 145.33847 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1486 1.1840 0.0000 4 1 3.1605 1.2232 -0.3753 5 6 1.5406 2.3381 0.4832 6 7 0.4476 2.2512 1.2061 7 14 2.2789 4.0116 0.1039 8 1 3.5002 3.8380 -0.7229 9 1 1.2899 4.8316 -0.6410 10 1 2.6331 4.6957 1.3735 11 6 2.1389 -1.1672 0.0005 12 8 3.3569 -1.1672 0.0001 13 6 1.4306 -2.3940 0.0005 14 6 2.1077 -3.5668 0.0016 15 6 1.3810 -4.8316 -0.1176 16 6 0.0230 -4.9836 -0.3418 17 6 -0.2479 -6.3481 -0.3786 18 7 0.8697 -7.0064 -0.1952 19 7 1.9145 -6.0886 -0.0314 20 6 3.3242 -6.4154 0.1974 21 1 -0.3633 -0.0950 1.0232 22 1 -0.3633 0.9336 -0.4294 23 1 -0.3633 -0.8388 -0.5939 24 1 0.0235 3.0559 1.5427 25 1 0.3506 -2.3941 0.0005 26 1 3.1841 -3.5689 0.0902 27 1 -0.6965 -4.1873 -0.4617 28 1 -1.2204 -6.7917 -0.5332 29 1 3.8195 -6.5774 -0.7598 30 1 3.8077 -5.5913 0.7219 31 1 3.3939 -7.3207 0.8005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491348772.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:23 Heat of formation + Delta-G solvation = 72.690219 kcal Electronic energy + Delta-G solvation = -15805.326727 eV Core-core repulsion = 13089.766078 eV Total energy + Delta-G solvation = -2715.560649 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74636 -38.67128 -34.97042 -33.42373 -32.92640 -31.77912 -28.87418 -26.71148 -26.46868 -25.06608 -22.97507 -20.94818 -19.70867 -17.82831 -17.28395 -16.89245 -15.66921 -15.29207 -14.83008 -14.37795 -14.20432 -13.97016 -13.71777 -12.84212 -12.68892 -12.61222 -12.31771 -11.96826 -11.62547 -11.42908 -11.18718 -10.88263 -10.55342 -10.43696 -10.40609 -10.10394 -9.16796 -8.78242 -8.49364 -7.93499 -7.77549 -6.53464 -3.95616 1.06152 2.53998 2.59311 3.06693 3.17505 3.20396 3.24745 4.02022 4.36771 4.60479 4.76283 5.06180 5.09927 5.18922 5.23989 5.39908 5.44983 5.74764 5.87791 5.94851 6.16751 6.30454 6.69443 6.72713 6.78291 6.79740 7.06426 7.15340 7.38953 7.82939 8.01873 8.35427 9.05838 9.25834 9.90258 10.50111 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.053960 B = 0.005107 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.779296 B = 5480.922461 C = 5905.800625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.422 5.422 3 C -0.297 4.297 4 H 0.105 0.895 5 C 0.030 3.970 6 N -0.864 5.864 7 Si 0.929 3.071 8 H -0.265 1.265 9 H -0.278 1.278 10 H -0.279 1.279 11 C 0.450 3.550 12 O -0.602 6.602 13 C -0.118 4.118 14 C -0.089 4.089 15 C 0.127 3.873 16 C -0.266 4.266 17 C 0.044 3.956 18 N -0.307 5.307 19 N -0.374 5.374 20 C 0.101 3.899 21 H 0.056 0.944 22 H 0.077 0.923 23 H 0.034 0.966 24 H 0.272 0.728 25 H 0.122 0.878 26 H 0.133 0.867 27 H 0.150 0.850 28 H 0.181 0.819 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 -10.029 -2.001 10.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.137 5.137 3 C -0.425 4.425 4 H 0.122 0.878 5 C -0.175 4.175 6 N -0.501 5.501 7 Si 0.755 3.245 8 H -0.189 1.189 9 H -0.204 1.204 10 H -0.205 1.205 11 C 0.243 3.757 12 O -0.491 6.491 13 C -0.143 4.143 14 C -0.113 4.113 15 C 0.001 3.999 16 C -0.295 4.295 17 C -0.139 4.139 18 N -0.129 5.129 19 N -0.158 5.158 20 C -0.040 4.040 21 H 0.074 0.926 22 H 0.095 0.905 23 H 0.052 0.948 24 H 0.082 0.918 25 H 0.140 0.860 26 H 0.151 0.849 27 H 0.167 0.833 28 H 0.198 0.802 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.247 -11.054 -1.794 11.268 hybrid contribution -0.357 1.661 -0.055 1.700 sum -1.605 -9.393 -1.849 9.707 Atomic orbital electron populations 1.21630 0.81044 1.00557 1.00938 1.43688 1.05757 1.05327 1.58959 1.19844 1.00452 0.83957 1.38290 0.87774 1.25480 0.96556 1.00598 0.94883 1.69979 1.19625 1.30171 1.30352 0.85813 0.79298 0.80831 0.78556 1.18918 1.20380 1.20491 1.16706 0.87893 0.84013 0.87091 1.90654 1.13440 1.87340 1.57663 1.22362 1.00319 0.93356 0.98217 1.21181 0.99462 0.88004 1.02648 1.20327 0.93167 0.85900 1.00514 1.21812 0.94287 0.96997 1.16453 1.23572 0.97278 0.92927 1.00167 1.77212 0.94907 1.15872 1.24902 1.48861 1.07567 1.03246 1.56107 1.21850 0.76185 1.03276 1.02696 0.92567 0.90465 0.94776 0.91767 0.86045 0.84890 0.83276 0.80199 0.90778 0.89047 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.19 8.27 59.85 0.49 2.69 16 2 N -0.42 -10.69 3.00 -125.46 -0.38 -11.06 16 3 C -0.30 -8.08 9.23 -15.05 -0.14 -8.22 16 4 H 0.10 2.97 7.44 -52.49 -0.39 2.58 16 5 C 0.03 0.77 4.98 -17.44 -0.09 0.69 16 6 N -0.86 -22.14 10.94 55.50 0.61 -21.53 16 7 Si 0.93 19.84 29.58 -169.99 -5.03 14.82 16 8 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 9 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 10 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 11 C 0.45 11.08 7.40 -14.95 -0.11 10.97 16 12 O -0.60 -16.81 15.82 5.10 0.08 -16.73 16 13 C -0.12 -2.31 8.57 -39.28 -0.34 -2.65 16 14 C -0.09 -1.58 9.21 -37.32 -0.34 -1.92 16 15 C 0.13 2.05 6.91 -82.29 -0.57 1.48 16 16 C -0.27 -3.91 10.20 -39.15 -0.40 -4.31 16 17 C 0.04 0.60 11.96 -17.56 -0.21 0.39 16 18 N -0.31 -4.73 12.54 30.50 0.38 -4.35 16 19 N -0.37 -5.64 4.07 -64.07 -0.26 -5.90 16 20 C 0.10 1.11 11.35 59.85 0.68 1.79 16 21 H 0.06 1.23 7.89 -51.93 -0.41 0.82 16 22 H 0.08 1.73 6.74 -51.93 -0.35 1.38 16 23 H 0.03 0.60 6.40 -51.92 -0.33 0.27 16 24 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 25 H 0.12 2.06 5.13 -52.49 -0.27 1.79 16 26 H 0.13 2.40 6.88 -52.48 -0.36 2.04 16 27 H 0.15 1.92 7.33 -52.49 -0.38 1.54 16 28 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.93 7.31 -51.93 -0.38 0.55 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 273.10 15.07 4.12 4.12 Total: -1.00 -32.01 273.10 -4.78 -36.79 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -3.28 Total: 2.95 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.02 Total: 0.91 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.35 Total: -42.85 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.08 Total: -16.73 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.01 -4.78 -36.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491348772.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.480 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds