Wall clock time and date at job start Sun Mar 29 2020 22:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36719 * 120.00054 * 2 1 4 4 H 1.07997 * 119.99641 * 203.65381 * 3 2 1 5 5 C 1.39111 * 119.99580 * 23.64605 * 3 2 1 6 6 N 1.31329 * 120.00352 * 15.29494 * 5 3 2 7 7 Si 1.86799 * 119.99647 * 195.29125 * 5 3 2 8 8 H 1.48503 * 109.47431 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47101 * 120.00368 * 7 5 3 10 10 H 1.48502 * 109.47267 * 240.00372 * 7 5 3 11 11 C 1.34778 * 120.00098 * 179.97438 * 2 1 3 12 12 O 1.21803 * 119.99956 * 179.97438 * 11 2 1 13 13 C 1.41663 * 119.99767 * 0.02562 * 11 2 1 14 14 C 1.35424 * 119.99705 * 180.02562 * 13 11 2 15 15 C 1.46353 * 120.00207 * 185.39436 * 14 13 11 16 16 C 1.38471 * 126.51618 * 5.38931 * 15 14 13 17 17 C 1.39162 * 107.63296 * 180.29797 * 16 15 14 18 18 N 1.30999 * 108.84000 * 359.73534 * 17 16 15 19 19 N 1.36831 * 126.52359 * 185.24169 * 15 14 13 20 20 C 1.46498 * 126.15656 * 359.97083 * 19 15 14 21 21 H 1.08996 * 109.46926 * 264.69560 * 1 2 3 22 22 H 1.08993 * 109.47174 * 24.69826 * 1 2 3 23 23 H 1.09009 * 109.46898 * 144.69664 * 1 2 3 24 24 H 0.96995 * 120.00250 * 180.02562 * 6 5 3 25 25 H 1.07997 * 120.00362 * 359.97438 * 13 11 2 26 26 H 1.08007 * 120.00250 * 5.38727 * 14 13 11 27 27 H 1.07992 * 126.18746 * 0.02882 * 16 15 14 28 28 H 1.07996 * 125.57944 * 179.74206 * 17 16 15 29 29 H 1.08990 * 109.46915 * 265.34434 * 20 19 15 30 30 H 1.08999 * 109.46848 * 25.34230 * 20 19 15 31 31 H 1.08997 * 109.47089 * 145.33847 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1486 1.1840 0.0000 4 1 3.1605 1.2232 -0.3753 5 6 1.5406 2.3381 0.4832 6 7 0.4476 2.2512 1.2061 7 14 2.2789 4.0116 0.1039 8 1 3.5002 3.8380 -0.7229 9 1 1.2899 4.8316 -0.6410 10 1 2.6331 4.6957 1.3735 11 6 2.1389 -1.1672 0.0005 12 8 3.3569 -1.1672 0.0001 13 6 1.4306 -2.3940 0.0005 14 6 2.1077 -3.5668 0.0016 15 6 1.3810 -4.8316 -0.1176 16 6 0.0230 -4.9836 -0.3418 17 6 -0.2479 -6.3481 -0.3786 18 7 0.8697 -7.0064 -0.1952 19 7 1.9145 -6.0886 -0.0314 20 6 3.3242 -6.4154 0.1974 21 1 -0.3633 -0.0950 1.0232 22 1 -0.3633 0.9336 -0.4294 23 1 -0.3633 -0.8388 -0.5939 24 1 0.0235 3.0559 1.5427 25 1 0.3506 -2.3941 0.0005 26 1 3.1841 -3.5689 0.0902 27 1 -0.6965 -4.1873 -0.4617 28 1 -1.2204 -6.7917 -0.5332 29 1 3.8195 -6.5774 -0.7598 30 1 3.8077 -5.5913 0.7219 31 1 3.3939 -7.3207 0.8005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491348772.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:23 Heat of formation + Delta-G solvation = 51.485696 kcal Electronic energy + Delta-G solvation = -15806.246224 eV Core-core repulsion = 13089.766078 eV Total energy + Delta-G solvation = -2716.480146 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.90467 -40.52829 -36.84950 -34.88440 -34.09151 -33.65608 -30.24725 -28.28317 -27.67776 -26.81388 -24.55999 -22.11808 -21.08610 -19.38690 -18.96598 -18.59856 -17.23481 -16.57771 -16.35421 -16.10501 -15.80084 -15.37590 -14.96556 -14.43258 -14.01415 -13.80122 -13.61545 -13.38744 -13.23784 -13.19226 -12.77347 -12.59470 -12.26385 -12.10571 -11.71323 -11.50402 -11.04736 -10.47243 -9.93210 -9.73124 -9.21069 -8.43340 -5.98807 -0.33333 1.25373 1.42453 1.44248 1.53252 1.57128 1.95538 2.26711 2.56374 3.09165 3.16039 3.64775 3.67263 3.99806 4.24945 4.36608 4.40913 4.59559 4.65025 4.66960 4.80551 4.92018 5.00315 5.23786 5.33910 5.38064 5.40948 5.73400 5.98277 6.07044 6.44655 6.70180 7.11571 7.38295 7.99440 8.59727 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.053960 B = 0.005107 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.779296 B = 5480.922461 C = 5905.800625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.441 5.441 3 C -0.344 4.344 4 H 0.075 0.925 5 C 0.001 3.999 6 N -0.883 5.883 7 Si 0.992 3.008 8 H -0.273 1.273 9 H -0.262 1.262 10 H -0.274 1.274 11 C 0.447 3.553 12 O -0.648 6.648 13 C -0.146 4.146 14 C -0.044 4.044 15 C 0.093 3.907 16 C -0.255 4.255 17 C 0.045 3.955 18 N -0.320 5.320 19 N -0.378 5.378 20 C 0.090 3.910 21 H 0.048 0.952 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.279 0.721 25 H 0.151 0.849 26 H 0.125 0.875 27 H 0.169 0.831 28 H 0.219 0.781 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 -11.368 -2.275 12.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.156 5.156 3 C -0.472 4.472 4 H 0.092 0.908 5 C -0.202 4.202 6 N -0.520 5.520 7 Si 0.815 3.185 8 H -0.197 1.197 9 H -0.186 1.186 10 H -0.200 1.200 11 C 0.242 3.758 12 O -0.540 6.540 13 C -0.169 4.169 14 C -0.067 4.067 15 C -0.033 4.033 16 C -0.284 4.284 17 C -0.138 4.138 18 N -0.143 5.143 19 N -0.162 5.162 20 C -0.050 4.050 21 H 0.067 0.933 22 H 0.081 0.919 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.168 0.832 26 H 0.143 0.857 27 H 0.187 0.813 28 H 0.236 0.764 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.655 -12.407 -2.062 12.854 hybrid contribution 0.089 1.750 0.030 1.753 sum -2.566 -10.657 -2.031 11.148 Atomic orbital electron populations 1.21613 0.79012 1.01494 1.01066 1.43858 1.07112 1.04978 1.59698 1.19721 1.00270 0.85905 1.41305 0.90756 1.26180 0.96862 1.03181 0.94002 1.70027 1.20255 1.31284 1.30456 0.84902 0.78514 0.76715 0.78370 1.19715 1.18645 1.19976 1.17471 0.87619 0.85453 0.85306 1.90604 1.15660 1.88317 1.59371 1.22097 1.01424 0.91324 1.02102 1.21222 0.99173 0.88560 0.97786 1.20222 0.94070 0.85665 1.03334 1.22234 0.93858 0.98228 1.14063 1.24219 0.98291 0.92439 0.98837 1.77205 0.95662 1.16539 1.24910 1.49202 1.08712 1.02758 1.55492 1.22153 0.74626 1.04283 1.03926 0.93317 0.91916 0.90730 0.91155 0.83154 0.85740 0.81333 0.76422 0.89425 0.88668 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.74 8.27 127.77 1.06 5.79 16 2 N -0.44 -22.87 3.00 -669.00 -2.01 -24.88 16 3 C -0.34 -19.44 9.23 84.14 0.78 -18.66 16 4 H 0.07 4.51 7.44 -2.91 -0.02 4.49 16 5 C 0.00 0.08 4.98 84.98 0.42 0.50 16 6 N -0.88 -45.57 10.94 21.69 0.24 -45.33 16 7 Si 0.99 41.22 29.58 68.60 2.03 43.25 16 8 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 9 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 11 C 0.45 22.50 7.40 85.09 0.63 23.13 16 12 O -0.65 -37.56 15.82 -4.68 -0.07 -37.63 16 13 C -0.15 -5.57 8.57 22.47 0.19 -5.38 16 14 C -0.04 -1.50 9.21 23.73 0.22 -1.29 16 15 C 0.09 2.79 6.91 40.53 0.28 3.07 16 16 C -0.25 -6.56 10.20 22.55 0.23 -6.33 16 17 C 0.04 1.05 11.96 85.04 1.02 2.06 16 18 N -0.32 -8.89 12.54 -57.41 -0.72 -9.61 16 19 N -0.38 -10.46 4.07 -356.63 -1.45 -11.91 16 20 C 0.09 1.81 11.35 127.77 1.45 3.26 16 21 H 0.05 2.11 7.89 -2.39 -0.02 2.10 16 22 H 0.06 2.82 6.74 -2.39 -0.02 2.81 16 23 H 0.07 2.50 6.40 -2.38 -0.02 2.48 16 24 H 0.28 13.28 8.31 -92.71 -0.77 12.51 16 25 H 0.15 4.73 5.13 -2.91 -0.01 4.72 16 26 H 0.12 4.47 6.88 -2.91 -0.02 4.45 16 27 H 0.17 3.61 7.33 -2.91 -0.02 3.59 16 28 H 0.22 3.16 8.06 -2.91 -0.02 3.14 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.81 7.31 -2.39 -0.02 1.79 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -70.81 273.10 5.43 -65.38 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 1.14 Total: 14.59 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 6.27 Total: 6.15 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -3.94 Total: -91.73 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.07 Total: -37.63 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -70.81 5.43 -65.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491348772.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.864 kcal (2) G-P(sol) polarization free energy of solvation -70.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds