Wall clock time and date at job start Sun Mar 29 2020 22:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47195 * 2 1 4 4 N 1.40033 * 126.15662 * 275.16536 * 3 2 1 5 5 C 1.31000 * 108.87568 * 180.27373 * 4 3 2 6 6 C 1.39153 * 108.83952 * 359.74117 * 5 4 3 7 7 C 1.36834 * 126.15412 * 94.98799 * 3 2 1 8 8 C 1.46350 * 126.52131 * 359.97438 * 7 3 2 9 9 C 1.35423 * 120.00025 * 174.48519 * 8 7 3 10 10 C 1.41666 * 120.00283 * 184.83307 * 9 8 7 11 11 O 1.21804 * 119.99414 * 0.02562 * 10 9 8 12 12 N 1.34769 * 120.00209 * 180.02562 * 10 9 8 13 13 C 1.36716 * 120.00142 * 179.97438 * 12 10 9 14 14 H 1.08002 * 119.99891 * 0.02562 * 13 12 10 15 15 C 1.39108 * 120.00053 * 179.97438 * 13 12 10 16 16 N 1.31336 * 120.00199 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00028 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47082 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47350 * 119.99703 * 17 15 13 20 20 H 1.48504 * 109.47127 * 240.00288 * 17 15 13 21 21 H 1.08997 * 109.47292 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.47299 * 300.00056 * 1 2 3 23 23 H 1.08999 * 109.47309 * 59.99732 * 1 2 3 24 24 H 1.09001 * 109.46902 * 240.00111 * 2 1 3 25 25 H 1.09000 * 109.46578 * 120.00407 * 2 1 3 26 26 H 1.07998 * 125.58455 * 179.70406 * 5 4 3 27 27 H 1.08000 * 126.18448 * 180.02562 * 6 5 4 28 28 H 1.08002 * 120.00183 * 354.22236 * 8 7 3 29 29 H 1.08002 * 119.99893 * 4.83948 * 9 8 7 30 30 H 0.96996 * 120.00253 * 359.97438 * 12 10 9 31 31 H 0.96996 * 120.00132 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1978 2.1940 -1.1260 5 6 2.6534 3.3597 -0.7390 6 6 2.7823 3.3543 0.6465 7 6 2.3780 2.1102 1.1007 8 6 2.3468 1.6590 2.4925 9 6 2.8384 2.4533 3.4730 10 6 2.9025 1.9766 4.8055 11 8 2.5157 0.8521 5.0691 12 7 3.3913 2.7672 5.7813 13 6 3.4526 2.3073 7.0674 14 1 3.1097 1.3102 7.3012 15 6 3.9576 3.1232 8.0745 16 7 4.3751 4.3355 7.7901 17 14 4.0420 2.4946 9.8315 18 1 3.5134 1.1079 9.8871 19 1 5.4531 2.5057 10.2940 20 1 3.2260 3.3704 10.7104 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.8907 4.1890 -1.3889 27 1 3.1337 4.1727 1.2574 28 1 1.9278 0.6944 2.7382 29 1 3.1817 3.4503 3.2391 30 1 3.6996 3.6625 5.5713 31 1 4.7276 4.9043 8.4923 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492243677.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:32 Heat of formation + Delta-G solvation = 48.763458 kcal Electronic energy + Delta-G solvation = -15500.448731 eV Core-core repulsion = 12783.850539 eV Total energy + Delta-G solvation = -2716.598191 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.77228 -38.41611 -34.46410 -34.33158 -33.13682 -31.44468 -29.53157 -28.70421 -25.61143 -23.89442 -22.96642 -20.86846 -19.60235 -18.50752 -17.68934 -17.13289 -15.69082 -15.03858 -14.85811 -14.62480 -14.29753 -13.92798 -13.50517 -13.31468 -12.85755 -12.71434 -12.50334 -12.12367 -11.70766 -11.36351 -11.26810 -11.21868 -10.49957 -10.47792 -10.39786 -10.17240 -9.67792 -8.78607 -8.52915 -8.17928 -7.88097 -6.67985 -3.94133 1.06706 2.54676 2.57814 3.06574 3.16635 3.22207 3.23986 4.02411 4.33307 4.54217 4.78492 4.94391 5.05243 5.17813 5.21791 5.25552 5.43520 5.51961 5.62967 5.85018 5.94155 5.98792 6.02375 6.31419 6.76260 6.80624 6.83058 7.18701 7.32133 7.85932 7.89638 8.42714 8.97804 9.33654 9.93872 10.48013 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.046246 B = 0.004694 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.314496 B = 5963.823662 C = 6487.575314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.128 3.872 3 N -0.369 5.369 4 N -0.306 5.306 5 C 0.043 3.957 6 C -0.268 4.268 7 C 0.128 3.872 8 C -0.090 4.090 9 C -0.117 4.117 10 C 0.442 3.558 11 O -0.610 6.610 12 N -0.534 5.534 13 C -0.288 4.288 14 H 0.111 0.889 15 C 0.023 3.977 16 N -0.880 5.880 17 Si 0.936 3.064 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.278 1.278 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.180 0.820 27 H 0.149 0.851 28 H 0.133 0.867 29 H 0.118 0.882 30 H 0.395 0.605 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 -1.724 -11.712 12.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.007 3.993 3 N -0.153 5.153 4 N -0.127 5.127 5 C -0.141 4.141 6 C -0.297 4.297 7 C 0.002 3.998 8 C -0.114 4.114 9 C -0.142 4.142 10 C 0.234 3.766 11 O -0.500 6.500 12 N -0.166 5.166 13 C -0.419 4.419 14 H 0.128 0.872 15 C -0.181 4.181 16 N -0.519 5.519 17 Si 0.762 3.238 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.204 1.204 21 H 0.094 0.906 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.109 0.891 25 H 0.115 0.885 26 H 0.197 0.803 27 H 0.167 0.833 28 H 0.151 0.849 29 H 0.135 0.865 30 H 0.229 0.771 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.710 -3.137 -12.405 13.322 hybrid contribution 0.539 0.970 1.419 1.801 sum -3.170 -2.166 -10.986 11.638 Atomic orbital electron populations 1.22180 0.94362 1.02953 1.03249 1.21670 0.95298 0.77956 1.04384 1.49049 1.51035 1.11732 1.03491 1.77195 1.23634 1.03476 1.08441 1.23558 0.99363 0.95913 0.95218 1.21811 1.14860 0.98118 0.94904 1.20313 0.99031 0.91972 0.88533 1.21126 1.02153 1.00962 0.87147 1.22181 0.98488 0.99352 0.94153 1.16575 0.87361 0.87304 0.85381 1.90661 1.55306 1.20267 1.83727 1.42036 1.51547 1.15415 1.07584 1.19967 1.37520 1.01497 0.82885 0.87164 1.25474 0.96293 0.95190 1.01184 1.69587 1.39520 1.07623 1.35185 0.85698 0.78149 0.79326 0.80669 1.18854 1.20392 1.20395 0.90593 0.91711 0.91827 0.89074 0.88475 0.80317 0.83329 0.84903 0.86455 0.77085 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 10.24 37.16 0.38 -1.35 16 2 C 0.13 1.47 7.04 -4.04 -0.03 1.45 16 3 N -0.37 -5.50 3.67 -57.32 -0.21 -5.71 16 4 N -0.31 -4.67 12.54 30.50 0.38 -4.29 16 5 C 0.04 0.59 11.96 -17.57 -0.21 0.38 16 6 C -0.27 -3.92 10.21 -39.16 -0.40 -4.32 16 7 C 0.13 2.04 6.91 -82.29 -0.57 1.47 16 8 C -0.09 -1.56 9.20 -37.33 -0.34 -1.91 16 9 C -0.12 -2.23 9.32 -39.28 -0.37 -2.59 16 10 C 0.44 10.59 7.51 -14.95 -0.11 10.48 16 11 O -0.61 -16.66 15.69 5.10 0.08 -16.58 16 12 N -0.53 -13.32 5.26 -13.60 -0.07 -13.39 16 13 C -0.29 -7.76 9.67 -15.05 -0.15 -7.91 16 14 H 0.11 3.11 7.15 -52.49 -0.38 2.73 16 15 C 0.02 0.59 5.50 -17.44 -0.10 0.50 16 16 N -0.88 -22.75 13.05 55.50 0.72 -22.03 16 17 Si 0.94 19.93 29.55 -169.99 -5.02 14.91 16 18 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.10 1.06 7.30 -51.93 -0.38 0.68 16 26 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 27 H 0.15 1.92 7.28 -52.49 -0.38 1.54 16 28 H 0.13 2.37 6.88 -52.49 -0.36 2.01 16 29 H 0.12 1.91 6.92 -52.49 -0.36 1.54 16 30 H 0.40 9.31 7.85 -40.82 -0.32 8.99 16 31 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 280.98 15.07 4.23 4.23 Total: -1.00 -31.14 280.98 -5.20 -36.34 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -3.43 Total: 10.34 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.89 Total: -3.82 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.82 Total: -45.42 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.08 Total: -16.58 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.14 -5.20 -36.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492243677.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.107 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds