Wall clock time and date at job start Sun Mar 29 2020 22:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47195 * 2 1 4 4 N 1.40033 * 126.15662 * 275.16536 * 3 2 1 5 5 C 1.31000 * 108.87568 * 180.27373 * 4 3 2 6 6 C 1.39153 * 108.83952 * 359.74117 * 5 4 3 7 7 C 1.36834 * 126.15412 * 94.98799 * 3 2 1 8 8 C 1.46350 * 126.52131 * 359.97438 * 7 3 2 9 9 C 1.35423 * 120.00025 * 174.48519 * 8 7 3 10 10 C 1.41666 * 120.00283 * 184.83307 * 9 8 7 11 11 O 1.21804 * 119.99414 * 0.02562 * 10 9 8 12 12 N 1.34769 * 120.00209 * 180.02562 * 10 9 8 13 13 C 1.36716 * 120.00142 * 179.97438 * 12 10 9 14 14 H 1.08002 * 119.99891 * 0.02562 * 13 12 10 15 15 C 1.39108 * 120.00053 * 179.97438 * 13 12 10 16 16 N 1.31336 * 120.00199 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00028 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47082 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47350 * 119.99703 * 17 15 13 20 20 H 1.48504 * 109.47127 * 240.00288 * 17 15 13 21 21 H 1.08997 * 109.47292 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.47299 * 300.00056 * 1 2 3 23 23 H 1.08999 * 109.47309 * 59.99732 * 1 2 3 24 24 H 1.09001 * 109.46902 * 240.00111 * 2 1 3 25 25 H 1.09000 * 109.46578 * 120.00407 * 2 1 3 26 26 H 1.07998 * 125.58455 * 179.70406 * 5 4 3 27 27 H 1.08000 * 126.18448 * 180.02562 * 6 5 4 28 28 H 1.08002 * 120.00183 * 354.22236 * 8 7 3 29 29 H 1.08002 * 119.99893 * 4.83948 * 9 8 7 30 30 H 0.96996 * 120.00253 * 359.97438 * 12 10 9 31 31 H 0.96996 * 120.00132 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1978 2.1940 -1.1260 5 6 2.6534 3.3597 -0.7390 6 6 2.7823 3.3543 0.6465 7 6 2.3780 2.1102 1.1007 8 6 2.3468 1.6590 2.4925 9 6 2.8384 2.4533 3.4730 10 6 2.9025 1.9766 4.8055 11 8 2.5157 0.8521 5.0691 12 7 3.3913 2.7672 5.7813 13 6 3.4526 2.3073 7.0674 14 1 3.1097 1.3102 7.3012 15 6 3.9576 3.1232 8.0745 16 7 4.3751 4.3355 7.7901 17 14 4.0420 2.4946 9.8315 18 1 3.5134 1.1079 9.8871 19 1 5.4531 2.5057 10.2940 20 1 3.2260 3.3704 10.7104 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.8907 4.1890 -1.3889 27 1 3.1337 4.1727 1.2574 28 1 1.9278 0.6944 2.7382 29 1 3.1817 3.4503 3.2391 30 1 3.6996 3.6625 5.5713 31 1 4.7276 4.9043 8.4923 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492243677.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:32 Heat of formation + Delta-G solvation = 27.860766 kcal Electronic energy + Delta-G solvation = -15501.355139 eV Core-core repulsion = 12783.850539 eV Total energy + Delta-G solvation = -2717.504600 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.93646 -40.30768 -36.25037 -35.40239 -34.70249 -33.37842 -30.64565 -29.97801 -27.40555 -25.04749 -24.35513 -22.11347 -21.00045 -20.28221 -19.33161 -18.54217 -17.21169 -16.64854 -16.11677 -15.93892 -15.77021 -15.42295 -15.13030 -14.76630 -14.20456 -14.07379 -13.53980 -13.45208 -13.04106 -12.98011 -12.62003 -12.47577 -12.26030 -12.10428 -11.68054 -11.64942 -11.41860 -10.52050 -10.12870 -9.92989 -9.20809 -8.57771 -5.97988 -0.32764 1.25042 1.42869 1.46232 1.50324 1.57642 1.96132 2.27650 2.54496 3.21384 3.28491 3.59203 3.76995 4.02286 4.06939 4.14937 4.32889 4.44838 4.56999 4.73229 4.77540 4.90577 4.93265 5.14530 5.26685 5.35237 5.39191 5.74428 5.94822 6.01392 6.50960 6.72308 7.03098 7.44118 8.03423 8.59028 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.046246 B = 0.004694 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.314496 B = 5963.823662 C = 6487.575314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.117 3.883 3 N -0.370 5.370 4 N -0.317 5.317 5 C 0.043 3.957 6 C -0.257 4.257 7 C 0.094 3.906 8 C -0.044 4.044 9 C -0.144 4.144 10 C 0.448 3.552 11 O -0.649 6.649 12 N -0.545 5.545 13 C -0.333 4.333 14 H 0.085 0.915 15 C -0.008 4.008 16 N -0.905 5.905 17 Si 0.998 3.002 18 H -0.271 1.271 19 H -0.268 1.268 20 H -0.268 1.268 21 H 0.101 0.899 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.217 0.783 27 H 0.167 0.833 28 H 0.126 0.874 29 H 0.148 0.852 30 H 0.400 0.600 31 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.166 -1.279 -13.215 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.003 4.003 3 N -0.155 5.155 4 N -0.140 5.140 5 C -0.140 4.140 6 C -0.286 4.286 7 C -0.032 4.032 8 C -0.067 4.067 9 C -0.168 4.168 10 C 0.241 3.759 11 O -0.541 6.541 12 N -0.178 5.178 13 C -0.463 4.463 14 H 0.103 0.897 15 C -0.210 4.210 16 N -0.544 5.544 17 Si 0.821 3.179 18 H -0.196 1.196 19 H -0.193 1.193 20 H -0.193 1.193 21 H 0.120 0.880 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.127 0.873 25 H 0.118 0.882 26 H 0.234 0.766 27 H 0.184 0.816 28 H 0.143 0.857 29 H 0.165 0.835 30 H 0.235 0.765 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.720 -2.679 -13.929 14.664 hybrid contribution 0.452 0.758 1.520 1.758 sum -3.268 -1.920 -12.409 12.974 Atomic orbital electron populations 1.22130 0.93341 1.04368 1.02143 1.21991 0.96161 0.76766 1.05431 1.49372 1.50510 1.12586 1.02989 1.77188 1.23678 1.04272 1.08846 1.24185 0.98192 0.96286 0.95293 1.22217 1.12815 0.97824 0.95755 1.20219 1.01651 0.93301 0.88012 1.21181 0.97934 0.99659 0.87955 1.21959 1.01806 1.01323 0.91701 1.17291 0.85292 0.86460 0.86884 1.90620 1.56545 1.22091 1.84865 1.41969 1.52765 1.15765 1.07317 1.19847 1.40664 1.01292 0.84503 0.89714 1.26204 0.95220 0.95206 1.04370 1.69631 1.40082 1.08260 1.36434 0.84795 0.78560 0.78396 0.76154 1.19576 1.19288 1.19287 0.87993 0.93325 0.92256 0.87330 0.88178 0.76641 0.81556 0.85668 0.83467 0.76546 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 10.24 71.98 0.74 -2.28 16 2 C 0.12 2.46 7.04 86.38 0.61 3.07 16 3 N -0.37 -10.23 3.67 -335.27 -1.23 -11.46 16 4 N -0.32 -8.81 12.54 -57.41 -0.72 -9.53 16 5 C 0.04 1.02 11.96 85.04 1.02 2.04 16 6 C -0.26 -6.72 10.21 22.54 0.23 -6.49 16 7 C 0.09 2.82 6.91 40.53 0.28 3.09 16 8 C -0.04 -1.48 9.20 23.73 0.22 -1.26 16 9 C -0.14 -5.39 9.32 22.47 0.21 -5.18 16 10 C 0.45 21.92 7.51 85.09 0.64 22.56 16 11 O -0.65 -36.56 15.69 -4.68 -0.07 -36.63 16 12 N -0.55 -28.01 5.26 -315.11 -1.66 -29.67 16 13 C -0.33 -18.61 9.67 84.14 0.81 -17.79 16 14 H 0.08 5.04 7.15 -2.91 -0.02 5.02 16 15 C -0.01 -0.41 5.50 84.98 0.47 0.06 16 16 N -0.91 -47.12 13.05 21.69 0.28 -46.84 16 17 Si 1.00 41.26 29.55 68.60 2.03 43.29 16 18 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 19 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 20 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 21 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 23 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.10 2.03 7.30 -2.39 -0.02 2.02 16 26 H 0.22 3.27 8.06 -2.91 -0.02 3.25 16 27 H 0.17 3.69 7.28 -2.91 -0.02 3.67 16 28 H 0.13 4.43 6.88 -2.91 -0.02 4.41 16 29 H 0.15 4.54 6.92 -2.91 -0.02 4.52 16 30 H 0.40 19.28 7.85 -92.71 -0.73 18.55 16 31 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -67.91 280.98 4.27 -63.64 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.42 Total: 29.36 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 5.22 Total: -2.16 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -3.33 Total: -97.49 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -0.07 Total: -36.63 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -67.91 4.27 -63.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492243677.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.503 kcal (2) G-P(sol) polarization free energy of solvation -67.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds