Wall clock time and date at job start Sun Mar 29 2020 22:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46507 * 109.46816 * 2 1 4 4 C 1.36307 * 126.50701 * 264.97672 * 3 2 1 5 5 C 1.35512 * 107.10313 * 180.02562 * 4 3 2 6 6 N 1.33175 * 108.46252 * 359.97438 * 5 4 3 7 7 C 1.31950 * 109.22628 * 359.97438 * 6 5 4 8 8 C 1.46413 * 125.89187 * 179.97438 * 7 6 5 9 9 C 1.35373 * 119.99592 * 41.61475 * 8 7 6 10 10 C 1.41818 * 120.00351 * 8.88012 * 9 8 7 11 11 O 1.21792 * 119.99837 * 6.16897 * 10 9 8 12 12 N 1.34773 * 120.00070 * 186.17037 * 10 9 8 13 13 C 1.36649 * 119.99803 * 179.97438 * 12 10 9 14 14 H 1.07997 * 119.99874 * 0.02562 * 13 12 10 15 15 C 1.39162 * 119.99829 * 179.97438 * 13 12 10 16 16 N 1.31295 * 119.99990 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99829 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47201 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47306 * 120.00076 * 17 15 13 20 20 H 1.48497 * 109.47406 * 240.00009 * 17 15 13 21 21 H 1.08994 * 109.46510 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47178 * 299.99967 * 1 2 3 23 23 H 1.09000 * 109.46632 * 60.00244 * 1 2 3 24 24 H 1.08994 * 109.47178 * 240.00033 * 2 1 3 25 25 H 1.09002 * 109.47067 * 119.99469 * 2 1 3 26 26 H 1.08000 * 126.44929 * 0.03314 * 4 3 2 27 27 H 1.08001 * 125.76209 * 180.26015 * 5 4 3 28 28 H 1.07991 * 120.00167 * 221.61717 * 8 7 6 29 29 H 1.07996 * 119.99832 * 188.88118 * 9 8 7 30 30 H 0.96996 * 120.00464 * 0.02562 * 12 10 9 31 31 H 0.97003 * 119.99893 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3791 2.1139 -1.0914 5 6 2.7684 3.3319 -0.6429 6 7 2.6510 3.3502 0.6836 7 6 2.1981 2.1815 1.0958 8 6 1.9352 1.8047 2.4860 9 6 1.3401 2.6849 3.3249 10 6 0.8020 3.8951 2.8177 11 8 0.7739 4.0926 1.6162 12 7 0.3219 4.8265 3.6652 13 6 -0.1961 5.9927 3.1765 14 1 -0.2211 6.1679 2.1111 15 6 -0.6924 6.9542 4.0516 16 7 -0.6625 6.7410 5.3468 17 14 -1.4012 8.5481 3.3835 18 1 -1.3197 8.5430 1.9008 19 1 -2.8212 8.6716 3.8003 20 1 -0.6268 9.6968 3.9183 21 1 -0.3632 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 2.3583 1.7855 -2.1200 27 1 3.1112 4.1510 -1.2577 28 1 2.2160 0.8246 2.8422 29 1 1.2752 2.4656 4.3803 30 1 0.3446 4.6693 4.6221 31 1 -1.0088 7.4111 5.9568 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492280630.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:06 Heat of formation + Delta-G solvation = 63.514727 kcal Electronic energy + Delta-G solvation = -16259.588854 eV Core-core repulsion = 13543.630326 eV Total energy + Delta-G solvation = -2715.958528 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.26363 -38.13202 -34.59828 -34.13149 -32.45198 -31.19310 -29.73936 -28.12726 -25.34864 -23.64907 -22.64214 -20.62022 -19.88723 -18.21074 -17.52197 -16.96057 -15.62279 -14.86009 -14.64216 -14.37391 -14.02778 -13.50050 -13.36762 -13.03973 -12.72367 -12.67753 -12.29577 -11.97932 -11.58493 -11.48743 -11.24723 -11.10277 -10.31772 -10.20225 -9.57432 -9.35034 -9.12869 -8.74877 -8.16036 -7.85348 -7.17324 -6.45323 -3.70813 1.59562 2.76910 3.20824 3.27817 3.29232 3.36417 4.15210 4.20388 4.57893 4.69446 5.01706 5.09735 5.13425 5.25854 5.31904 5.47124 5.61426 5.67195 5.76851 6.02728 6.12945 6.18638 6.32973 6.68477 6.93133 6.98314 7.44083 7.53958 7.80524 8.13738 8.69839 8.92654 9.24951 9.61532 10.26007 10.72120 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.036850 B = 0.006319 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.646171 B = 4429.795691 C = 4679.107138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.457 5.457 4 C -0.078 4.078 5 C -0.024 4.024 6 N -0.414 5.414 7 C 0.248 3.752 8 C -0.074 4.074 9 C -0.125 4.125 10 C 0.446 3.554 11 O -0.566 6.566 12 N -0.548 5.548 13 C -0.279 4.279 14 H 0.106 0.894 15 C 0.018 3.982 16 N -0.892 5.892 17 Si 0.931 3.069 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.280 1.280 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.162 0.838 27 H 0.158 0.842 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.390 0.610 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 -13.082 -6.223 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.016 4.016 3 N -0.141 5.141 4 C -0.211 4.211 5 C -0.177 4.177 6 N -0.130 5.130 7 C -0.009 4.009 8 C -0.098 4.098 9 C -0.150 4.150 10 C 0.236 3.764 11 O -0.450 6.450 12 N -0.183 5.183 13 C -0.409 4.409 14 H 0.124 0.876 15 C -0.185 4.185 16 N -0.532 5.532 17 Si 0.758 3.242 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.206 1.206 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.180 0.820 27 H 0.175 0.825 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.224 0.776 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.379 -12.274 -6.377 14.238 hybrid contribution -0.699 0.068 -0.202 0.730 sum 2.680 -12.206 -6.579 14.123 Atomic orbital electron populations 1.22141 0.94370 1.02319 1.03801 1.21684 0.95614 0.80805 1.03532 1.45642 1.49370 1.11933 1.07180 1.22481 1.11641 0.95025 0.91987 1.22189 1.06912 0.96309 0.92270 1.70592 1.15339 1.16305 1.10794 1.21323 1.04835 0.86402 0.88313 1.20688 1.01736 0.98791 0.88616 1.22386 0.97204 0.96331 0.99032 1.16756 0.86497 0.85507 0.87608 1.90780 1.60564 1.79488 1.14184 1.42006 1.51824 1.15705 1.08783 1.19858 1.33419 0.92797 0.94858 0.87599 1.25366 0.97988 1.00097 0.95000 1.69576 1.45702 1.36173 1.01785 0.85768 0.78261 0.80832 0.79365 1.19097 1.20738 1.20623 0.91163 0.91327 0.92042 0.89738 0.89572 0.82046 0.82487 0.85691 0.86086 0.77632 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 10.24 37.16 0.38 -1.51 16 2 C 0.11 1.19 6.64 -4.03 -0.03 1.16 16 3 N -0.46 -7.47 2.79 -114.54 -0.32 -7.79 16 4 C -0.08 -1.27 11.57 -16.54 -0.19 -1.46 16 5 C -0.02 -0.47 11.84 -17.94 -0.21 -0.68 16 6 N -0.41 -9.58 8.44 -11.43 -0.10 -9.67 16 7 C 0.25 4.97 6.12 -154.49 -0.95 4.03 16 8 C -0.07 -1.31 9.72 -37.31 -0.36 -1.67 16 9 C -0.12 -2.45 9.86 -39.24 -0.39 -2.84 16 10 C 0.45 11.32 7.33 -14.89 -0.11 11.21 16 11 O -0.57 -16.17 11.97 5.11 0.06 -16.11 16 12 N -0.55 -14.56 5.26 -13.56 -0.07 -14.63 16 13 C -0.28 -8.01 9.67 -15.06 -0.15 -8.16 16 14 H 0.11 3.23 7.15 -52.49 -0.38 2.85 16 15 C 0.02 0.49 5.50 -17.44 -0.10 0.40 16 16 N -0.89 -24.53 13.04 55.51 0.72 -23.80 16 17 Si 0.93 21.44 29.55 -169.99 -5.02 16.41 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 25 H 0.09 0.81 7.93 -51.93 -0.41 0.40 16 26 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 27 H 0.16 2.70 8.06 -52.49 -0.42 2.28 16 28 H 0.13 1.61 8.01 -52.49 -0.42 1.19 16 29 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.39 9.84 7.85 -40.82 -0.32 9.51 16 31 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 276.85 15.07 4.17 4.17 Total: -1.00 -35.04 276.85 -6.27 -41.32 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -3.62 Total: 9.63 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.10 Total: 0.47 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.24 Total: -55.89 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.06 Total: -16.11 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -35.04 -6.27 -41.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492280630.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.830 kcal (2) G-P(sol) polarization free energy of solvation -35.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds