Wall clock time and date at job start Sun Mar 29 2020 22:12:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 N 1.46507 * 109.46816 * 2 1
4 4 C 1.36307 * 126.50701 * 264.97672 * 3 2 1
5 5 C 1.35512 * 107.10313 * 180.02562 * 4 3 2
6 6 N 1.33175 * 108.46252 * 359.97438 * 5 4 3
7 7 C 1.31950 * 109.22628 * 359.97438 * 6 5 4
8 8 C 1.46413 * 125.89187 * 179.97438 * 7 6 5
9 9 C 1.35373 * 119.99592 * 41.61475 * 8 7 6
10 10 C 1.41818 * 120.00351 * 8.88012 * 9 8 7
11 11 O 1.21792 * 119.99837 * 6.16897 * 10 9 8
12 12 N 1.34773 * 120.00070 * 186.17037 * 10 9 8
13 13 C 1.36649 * 119.99803 * 179.97438 * 12 10 9
14 14 H 1.07997 * 119.99874 * 0.02562 * 13 12 10
15 15 C 1.39162 * 119.99829 * 179.97438 * 13 12 10
16 16 N 1.31295 * 119.99990 * 0.02562 * 15 13 12
17 17 Si 1.86795 * 119.99829 * 180.02562 * 15 13 12
18 18 H 1.48502 * 109.47201 * 0.02562 * 17 15 13
19 19 H 1.48505 * 109.47306 * 120.00076 * 17 15 13
20 20 H 1.48497 * 109.47406 * 240.00009 * 17 15 13
21 21 H 1.08994 * 109.46510 * 179.97438 * 1 2 3
22 22 H 1.08994 * 109.47178 * 299.99967 * 1 2 3
23 23 H 1.09000 * 109.46632 * 60.00244 * 1 2 3
24 24 H 1.08994 * 109.47178 * 240.00033 * 2 1 3
25 25 H 1.09002 * 109.47067 * 119.99469 * 2 1 3
26 26 H 1.08000 * 126.44929 * 0.03314 * 4 3 2
27 27 H 1.08001 * 125.76209 * 180.26015 * 5 4 3
28 28 H 1.07991 * 120.00167 * 221.61717 * 8 7 6
29 29 H 1.07996 * 119.99832 * 188.88118 * 9 8 7
30 30 H 0.96996 * 120.00464 * 0.02562 * 12 10 9
31 31 H 0.97003 * 119.99893 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0184 1.3813 0.0000
4 6 2.3791 2.1139 -1.0914
5 6 2.7684 3.3319 -0.6429
6 7 2.6510 3.3502 0.6836
7 6 2.1981 2.1815 1.0958
8 6 1.9352 1.8047 2.4860
9 6 1.3401 2.6849 3.3249
10 6 0.8020 3.8951 2.8177
11 8 0.7739 4.0926 1.6162
12 7 0.3219 4.8265 3.6652
13 6 -0.1961 5.9927 3.1765
14 1 -0.2211 6.1679 2.1111
15 6 -0.6924 6.9542 4.0516
16 7 -0.6625 6.7410 5.3468
17 14 -1.4012 8.5481 3.3835
18 1 -1.3197 8.5430 1.9008
19 1 -2.8212 8.6716 3.8003
20 1 -0.6268 9.6968 3.9183
21 1 -0.3632 -1.0276 -0.0005
22 1 -0.3633 0.5138 0.8899
23 1 -0.3632 0.5138 -0.8900
24 1 1.8934 -0.5138 -0.8899
25 1 1.8934 -0.5138 0.8900
26 1 2.3583 1.7855 -2.1200
27 1 3.1112 4.1510 -1.2577
28 1 2.2160 0.8246 2.8422
29 1 1.2752 2.4656 4.3803
30 1 0.3446 4.6693 4.6221
31 1 -1.0088 7.4111 5.9568
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000492280630.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:12:06
Heat of formation + Delta-G solvation = 63.514727 kcal
Electronic energy + Delta-G solvation = -16259.588854 eV
Core-core repulsion = 13543.630326 eV
Total energy + Delta-G solvation = -2715.958528 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 235.106 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-41.26363 -38.13202 -34.59828 -34.13149 -32.45198 -31.19310 -29.73936 -28.12726
-25.34864 -23.64907 -22.64214 -20.62022 -19.88723 -18.21074 -17.52197 -16.96057
-15.62279 -14.86009 -14.64216 -14.37391 -14.02778 -13.50050 -13.36762 -13.03973
-12.72367 -12.67753 -12.29577 -11.97932 -11.58493 -11.48743 -11.24723 -11.10277
-10.31772 -10.20225 -9.57432 -9.35034 -9.12869 -8.74877 -8.16036 -7.85348
-7.17324 -6.45323 -3.70813 1.59562 2.76910 3.20824 3.27817 3.29232
3.36417 4.15210 4.20388 4.57893 4.69446 5.01706 5.09735 5.13425
5.25854 5.31904 5.47124 5.61426 5.67195 5.76851 6.02728 6.12945
6.18638 6.32973 6.68477 6.93133 6.98314 7.44083 7.53958 7.80524
8.13738 8.69839 8.92654 9.24951 9.61532 10.26007 10.72120
Molecular weight = 235.11amu
Principal moments of inertia in cm(-1)
A = 0.036850 B = 0.006319 C = 0.005983
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 759.646171 B = 4429.795691 C = 4679.107138
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.107 3.893
3 N -0.457 5.457
4 C -0.078 4.078
5 C -0.024 4.024
6 N -0.414 5.414
7 C 0.248 3.752
8 C -0.074 4.074
9 C -0.125 4.125
10 C 0.446 3.554
11 O -0.566 6.566
12 N -0.548 5.548
13 C -0.279 4.279
14 H 0.106 0.894
15 C 0.018 3.982
16 N -0.892 5.892
17 Si 0.931 3.069
18 H -0.267 1.267
19 H -0.281 1.281
20 H -0.280 1.280
21 H 0.069 0.931
22 H 0.068 0.932
23 H 0.060 0.940
24 H 0.084 0.916
25 H 0.086 0.914
26 H 0.162 0.838
27 H 0.158 0.842
28 H 0.125 0.875
29 H 0.121 0.879
30 H 0.390 0.610
31 H 0.273 0.727
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.343 -13.082 -6.223 14.868
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.016 4.016
3 N -0.141 5.141
4 C -0.211 4.211
5 C -0.177 4.177
6 N -0.130 5.130
7 C -0.009 4.009
8 C -0.098 4.098
9 C -0.150 4.150
10 C 0.236 3.764
11 O -0.450 6.450
12 N -0.183 5.183
13 C -0.409 4.409
14 H 0.124 0.876
15 C -0.185 4.185
16 N -0.532 5.532
17 Si 0.758 3.242
18 H -0.191 1.191
19 H -0.207 1.207
20 H -0.206 1.206
21 H 0.088 0.912
22 H 0.087 0.913
23 H 0.080 0.920
24 H 0.103 0.897
25 H 0.104 0.896
26 H 0.180 0.820
27 H 0.175 0.825
28 H 0.143 0.857
29 H 0.139 0.861
30 H 0.224 0.776
31 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 3.379 -12.274 -6.377 14.238
hybrid contribution -0.699 0.068 -0.202 0.730
sum 2.680 -12.206 -6.579 14.123
Atomic orbital electron populations
1.22141 0.94370 1.02319 1.03801 1.21684 0.95614 0.80805 1.03532
1.45642 1.49370 1.11933 1.07180 1.22481 1.11641 0.95025 0.91987
1.22189 1.06912 0.96309 0.92270 1.70592 1.15339 1.16305 1.10794
1.21323 1.04835 0.86402 0.88313 1.20688 1.01736 0.98791 0.88616
1.22386 0.97204 0.96331 0.99032 1.16756 0.86497 0.85507 0.87608
1.90780 1.60564 1.79488 1.14184 1.42006 1.51824 1.15705 1.08783
1.19858 1.33419 0.92797 0.94858 0.87599 1.25366 0.97988 1.00097
0.95000 1.69576 1.45702 1.36173 1.01785 0.85768 0.78261 0.80832
0.79365 1.19097 1.20738 1.20623 0.91163 0.91327 0.92042 0.89738
0.89572 0.82046 0.82487 0.85691 0.86086 0.77632 0.91722
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.90 10.24 37.16 0.38 -1.51 16
2 C 0.11 1.19 6.64 -4.03 -0.03 1.16 16
3 N -0.46 -7.47 2.79 -114.54 -0.32 -7.79 16
4 C -0.08 -1.27 11.57 -16.54 -0.19 -1.46 16
5 C -0.02 -0.47 11.84 -17.94 -0.21 -0.68 16
6 N -0.41 -9.58 8.44 -11.43 -0.10 -9.67 16
7 C 0.25 4.97 6.12 -154.49 -0.95 4.03 16
8 C -0.07 -1.31 9.72 -37.31 -0.36 -1.67 16
9 C -0.12 -2.45 9.86 -39.24 -0.39 -2.84 16
10 C 0.45 11.32 7.33 -14.89 -0.11 11.21 16
11 O -0.57 -16.17 11.97 5.11 0.06 -16.11 16
12 N -0.55 -14.56 5.26 -13.56 -0.07 -14.63 16
13 C -0.28 -8.01 9.67 -15.06 -0.15 -8.16 16
14 H 0.11 3.23 7.15 -52.49 -0.38 2.85 16
15 C 0.02 0.49 5.50 -17.44 -0.10 0.40 16
16 N -0.89 -24.53 13.04 55.51 0.72 -23.80 16
17 Si 0.93 21.44 29.55 -169.99 -5.02 16.41 16
18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16
19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
21 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
22 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
24 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16
25 H 0.09 0.81 7.93 -51.93 -0.41 0.40 16
26 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16
27 H 0.16 2.70 8.06 -52.49 -0.42 2.28 16
28 H 0.13 1.61 8.01 -52.49 -0.42 1.19 16
29 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16
30 H 0.39 9.84 7.85 -40.82 -0.32 9.51 16
31 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16
LS Contribution 276.85 15.07 4.17 4.17
Total: -1.00 -35.04 276.85 -6.27 -41.32
By element:
Atomic # 1 Polarization: 13.25 SS G_CDS: -3.62 Total: 9.63 kcal
Atomic # 6 Polarization: 2.56 SS G_CDS: -2.10 Total: 0.47 kcal
Atomic # 7 Polarization: -56.13 SS G_CDS: 0.24 Total: -55.89 kcal
Atomic # 8 Polarization: -16.17 SS G_CDS: 0.06 Total: -16.11 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal
Total LS contribution 4.17 Total: 4.17 kcal
Total: -35.04 -6.27 -41.32 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000492280630.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 104.830 kcal
(2) G-P(sol) polarization free energy of solvation -35.044 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.786 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal
(6) G-S(sol) free energy of system = (1) + (5) 63.515 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds