Wall clock time and date at job start Sun Mar 29 2020 22:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46507 * 109.46816 * 2 1 4 4 C 1.36307 * 126.50701 * 264.97672 * 3 2 1 5 5 C 1.35512 * 107.10313 * 180.02562 * 4 3 2 6 6 N 1.33175 * 108.46252 * 359.97438 * 5 4 3 7 7 C 1.31950 * 109.22628 * 359.97438 * 6 5 4 8 8 C 1.46413 * 125.89187 * 179.97438 * 7 6 5 9 9 C 1.35373 * 119.99592 * 41.61475 * 8 7 6 10 10 C 1.41818 * 120.00351 * 8.88012 * 9 8 7 11 11 O 1.21792 * 119.99837 * 6.16897 * 10 9 8 12 12 N 1.34773 * 120.00070 * 186.17037 * 10 9 8 13 13 C 1.36649 * 119.99803 * 179.97438 * 12 10 9 14 14 H 1.07997 * 119.99874 * 0.02562 * 13 12 10 15 15 C 1.39162 * 119.99829 * 179.97438 * 13 12 10 16 16 N 1.31295 * 119.99990 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99829 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47201 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47306 * 120.00076 * 17 15 13 20 20 H 1.48497 * 109.47406 * 240.00009 * 17 15 13 21 21 H 1.08994 * 109.46510 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47178 * 299.99967 * 1 2 3 23 23 H 1.09000 * 109.46632 * 60.00244 * 1 2 3 24 24 H 1.08994 * 109.47178 * 240.00033 * 2 1 3 25 25 H 1.09002 * 109.47067 * 119.99469 * 2 1 3 26 26 H 1.08000 * 126.44929 * 0.03314 * 4 3 2 27 27 H 1.08001 * 125.76209 * 180.26015 * 5 4 3 28 28 H 1.07991 * 120.00167 * 221.61717 * 8 7 6 29 29 H 1.07996 * 119.99832 * 188.88118 * 9 8 7 30 30 H 0.96996 * 120.00464 * 0.02562 * 12 10 9 31 31 H 0.97003 * 119.99893 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3791 2.1139 -1.0914 5 6 2.7684 3.3319 -0.6429 6 7 2.6510 3.3502 0.6836 7 6 2.1981 2.1815 1.0958 8 6 1.9352 1.8047 2.4860 9 6 1.3401 2.6849 3.3249 10 6 0.8020 3.8951 2.8177 11 8 0.7739 4.0926 1.6162 12 7 0.3219 4.8265 3.6652 13 6 -0.1961 5.9927 3.1765 14 1 -0.2211 6.1679 2.1111 15 6 -0.6924 6.9542 4.0516 16 7 -0.6625 6.7410 5.3468 17 14 -1.4012 8.5481 3.3835 18 1 -1.3197 8.5430 1.9008 19 1 -2.8212 8.6716 3.8003 20 1 -0.6268 9.6968 3.9183 21 1 -0.3632 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 2.3583 1.7855 -2.1200 27 1 3.1112 4.1510 -1.2577 28 1 2.2160 0.8246 2.8422 29 1 1.2752 2.4656 4.3803 30 1 0.3446 4.6693 4.6221 31 1 -1.0088 7.4111 5.9568 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492280630.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:06 Heat of formation + Delta-G solvation = 38.814618 kcal Electronic energy + Delta-G solvation = -16260.659931 eV Core-core repulsion = 13543.630326 eV Total energy + Delta-G solvation = -2717.029605 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.64534 -40.07014 -36.13232 -35.69737 -34.11968 -33.23746 -30.91276 -29.60854 -27.27049 -24.83941 -24.16445 -22.04617 -21.44010 -20.15238 -19.18240 -18.45760 -17.23218 -16.44023 -16.18833 -15.78298 -15.63131 -15.17213 -14.81338 -14.64444 -14.25342 -14.10793 -13.49012 -13.46361 -13.04768 -12.95833 -12.91485 -12.40552 -12.16749 -12.12938 -11.52039 -10.85834 -10.59202 -10.33192 -10.05296 -9.83045 -8.70163 -8.48625 -5.87739 0.11430 1.34888 1.38543 1.45180 1.53692 2.08034 2.30392 2.58256 2.73245 3.40811 3.51160 3.74087 3.89918 4.05486 4.16201 4.38879 4.42722 4.56320 4.66836 4.75624 4.84314 4.89721 5.16666 5.22583 5.37204 5.47355 5.56869 6.06277 6.06872 6.50408 6.66023 7.18589 7.49991 7.62366 8.27554 8.69214 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.036850 B = 0.006319 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.646171 B = 4429.795691 C = 4679.107138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 N -0.449 5.449 4 C -0.046 4.046 5 C -0.073 4.073 6 N -0.473 5.473 7 C 0.206 3.794 8 C -0.027 4.027 9 C -0.163 4.163 10 C 0.449 3.551 11 O -0.601 6.601 12 N -0.566 5.566 13 C -0.321 4.321 14 H 0.073 0.927 15 C -0.016 4.016 16 N -0.916 5.916 17 Si 0.993 3.007 18 H -0.278 1.278 19 H -0.267 1.267 20 H -0.269 1.269 21 H 0.107 0.893 22 H 0.036 0.964 23 H 0.046 0.954 24 H 0.122 0.878 25 H 0.112 0.888 26 H 0.209 0.791 27 H 0.162 0.838 28 H 0.185 0.815 29 H 0.160 0.840 30 H 0.394 0.606 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.629 -15.860 -6.861 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.024 4.024 3 N -0.131 5.131 4 C -0.182 4.182 5 C -0.225 4.225 6 N -0.191 5.191 7 C -0.051 4.051 8 C -0.050 4.050 9 C -0.187 4.187 10 C 0.241 3.759 11 O -0.488 6.488 12 N -0.202 5.202 13 C -0.451 4.451 14 H 0.091 0.909 15 C -0.215 4.215 16 N -0.557 5.557 17 Si 0.817 3.183 18 H -0.203 1.203 19 H -0.192 1.192 20 H -0.194 1.194 21 H 0.126 0.874 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.140 0.860 25 H 0.130 0.870 26 H 0.226 0.774 27 H 0.180 0.820 28 H 0.202 0.798 29 H 0.178 0.822 30 H 0.228 0.772 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.664 -15.100 -6.991 17.038 hybrid contribution -0.658 0.665 -0.247 0.967 sum 3.006 -14.435 -7.238 16.426 Atomic orbital electron populations 1.22125 0.94604 1.04022 1.01480 1.22200 0.95296 0.78133 1.06769 1.45942 1.47769 1.13466 1.05967 1.23128 1.07710 0.93552 0.93776 1.22557 1.09605 0.98571 0.91762 1.70428 1.17062 1.18669 1.12913 1.21711 1.06420 0.86756 0.90194 1.21473 0.96509 0.99978 0.87049 1.22383 1.00177 0.94650 1.01514 1.17718 0.84625 0.86533 0.87060 1.90752 1.61349 1.80637 1.16021 1.41962 1.53544 1.15791 1.08953 1.19634 1.36767 0.95044 0.93689 0.90922 1.26076 0.97699 1.02541 0.95233 1.69624 1.46449 1.37271 1.02345 0.84875 0.78270 0.77230 0.77954 1.20260 1.19165 1.19406 0.87444 0.94494 0.93504 0.86021 0.86970 0.77427 0.82036 0.79777 0.82241 0.77219 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 10.24 71.98 0.74 -2.41 16 2 C 0.10 1.68 6.64 86.38 0.57 2.26 16 3 N -0.45 -13.31 2.79 -516.31 -1.44 -14.75 16 4 C -0.05 -1.38 11.57 83.37 0.96 -0.42 16 5 C -0.07 -2.89 11.84 83.86 0.99 -1.89 16 6 N -0.47 -22.25 8.44 -190.07 -1.60 -23.86 16 7 C 0.21 7.99 6.12 135.82 0.83 8.82 16 8 C -0.03 -0.90 9.72 23.74 0.23 -0.67 16 9 C -0.16 -6.27 9.86 22.49 0.22 -6.05 16 10 C 0.45 23.52 7.33 85.13 0.62 24.15 16 11 O -0.60 -35.88 11.97 -4.64 -0.06 -35.93 16 12 N -0.57 -31.41 5.26 -314.99 -1.66 -33.07 16 13 C -0.32 -19.46 9.67 84.16 0.81 -18.65 16 14 H 0.07 4.77 7.15 -2.91 -0.02 4.75 16 15 C -0.02 -0.87 5.50 85.00 0.47 -0.40 16 16 N -0.92 -51.38 13.04 21.70 0.28 -51.10 16 17 Si 0.99 45.17 29.55 68.60 2.03 47.19 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 19 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.12 1.32 8.13 -2.39 -0.02 1.30 16 25 H 0.11 1.43 7.93 -2.39 -0.02 1.41 16 26 H 0.21 4.12 8.06 -2.91 -0.02 4.09 16 27 H 0.16 5.78 8.06 -2.91 -0.02 5.76 16 28 H 0.19 3.69 8.01 -2.91 -0.02 3.67 16 29 H 0.16 4.77 8.06 -2.91 -0.02 4.74 16 30 H 0.39 20.63 7.85 -92.71 -0.73 19.91 16 31 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -82.57 276.85 4.42 -78.15 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.41 Total: 28.62 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 6.46 Total: 4.75 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -4.42 Total: -122.78 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.06 Total: -35.93 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -82.57 4.42 -78.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492280630.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.962 kcal (2) G-P(sol) polarization free energy of solvation -82.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds