Wall clock time and date at job start Sun Mar 29 2020 22:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47360 * 2 1 4 4 C 1.36311 * 126.51176 * 264.95798 * 3 2 1 5 5 C 1.35508 * 107.10998 * 180.02562 * 4 3 2 6 6 N 1.33187 * 108.45993 * 359.74109 * 5 4 3 7 7 C 1.31948 * 109.22194 * 0.43298 * 6 5 4 8 8 C 1.46418 * 125.88779 * 179.83432 * 7 6 5 9 9 C 1.35366 * 119.99855 * 359.68705 * 8 7 6 10 10 C 1.41819 * 120.00095 * 180.02562 * 9 8 7 11 11 O 1.21793 * 119.99766 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00095 * 179.72962 * 10 9 8 13 13 C 1.36636 * 119.99982 * 180.27847 * 12 10 9 14 14 H 1.08002 * 120.00297 * 359.97438 * 13 12 10 15 15 C 1.39162 * 120.00182 * 179.97438 * 13 12 10 16 16 N 1.31294 * 120.00308 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99902 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47118 * 89.99652 * 17 15 13 19 19 H 1.48499 * 109.47134 * 210.00172 * 17 15 13 20 20 H 1.48507 * 109.46904 * 329.99994 * 17 15 13 21 21 H 1.08998 * 109.46898 * 59.99605 * 1 2 3 22 22 H 1.08994 * 109.47263 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47025 * 300.00319 * 1 2 3 24 24 H 1.09008 * 109.46866 * 239.99846 * 2 1 3 25 25 H 1.08998 * 109.46898 * 120.00395 * 2 1 3 26 26 H 1.07995 * 126.44192 * 0.02562 * 4 3 2 27 27 H 1.07993 * 125.77073 * 179.97438 * 5 4 3 28 28 H 1.08001 * 119.99838 * 179.68913 * 8 7 6 29 29 H 1.08002 * 119.99774 * 0.02562 * 9 8 7 30 30 H 0.97000 * 119.99736 * 0.27197 * 12 10 9 31 31 H 0.97000 * 120.00682 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3795 2.1137 -1.0913 5 6 2.7689 3.3317 -0.6429 6 7 2.6462 3.3518 0.6832 7 6 2.1993 2.1810 1.0960 8 6 1.9362 1.8042 2.4862 9 6 2.1583 2.6938 3.4820 10 6 1.9040 2.3288 4.8287 11 8 1.4862 1.2148 5.0891 12 7 2.1302 3.2126 5.8207 13 6 1.8906 2.8590 7.1186 14 1 1.5195 1.8714 7.3495 15 6 2.1247 3.7714 8.1429 16 7 1.8940 3.4318 9.3900 17 14 2.7672 5.4793 7.7437 18 1 1.6229 6.3994 7.5219 19 1 3.5896 5.9761 8.8760 20 1 3.6001 5.4203 6.5155 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 2.3592 1.7851 -2.1199 27 1 3.1160 4.1492 -1.2572 28 1 1.5650 0.8166 2.7170 29 1 2.5291 3.6815 3.2511 30 1 2.4633 4.0997 5.6132 31 1 2.0575 4.0675 10.1041 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492280631.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:09 Heat of formation + Delta-G solvation = 43.111571 kcal Electronic energy + Delta-G solvation = -15604.759591 eV Core-core repulsion = 12887.916315 eV Total energy + Delta-G solvation = -2716.843276 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.86466 -38.51817 -35.03789 -34.29935 -32.93853 -31.80357 -30.19682 -28.67853 -25.61532 -23.99726 -22.78790 -21.26071 -19.65014 -19.00199 -17.76007 -17.28767 -16.00417 -15.34365 -15.09296 -14.77166 -14.09192 -13.77136 -13.57438 -13.48436 -13.25312 -12.83442 -12.77530 -12.28284 -12.11143 -11.63222 -11.40593 -11.28667 -10.62571 -10.08749 -9.95211 -9.88355 -9.67042 -9.51430 -8.58096 -8.28391 -7.76037 -6.48181 -3.86011 1.18116 2.47598 2.71420 3.03833 3.06442 3.12351 3.45351 4.01092 4.33326 4.44106 4.56973 4.70938 4.77555 4.98578 5.02757 5.24658 5.33724 5.41373 5.46167 5.59808 5.73340 5.86858 6.09944 6.32316 6.65734 6.75014 6.88801 7.21585 7.46028 8.07176 8.17754 8.49358 8.84540 9.31134 9.81960 10.63133 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.039256 B = 0.005283 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.089575 B = 5298.260448 C = 5917.325177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.099 3.901 3 N -0.451 5.451 4 C -0.062 4.062 5 C -0.027 4.027 6 N -0.480 5.480 7 C 0.240 3.760 8 C -0.069 4.069 9 C -0.117 4.117 10 C 0.456 3.544 11 O -0.594 6.594 12 N -0.562 5.562 13 C -0.294 4.294 14 H 0.124 0.876 15 C 0.042 3.958 16 N -0.862 5.862 17 Si 0.880 3.120 18 H -0.267 1.267 19 H -0.273 1.273 20 H -0.264 1.264 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.172 0.828 27 H 0.168 0.832 28 H 0.139 0.861 29 H 0.124 0.876 30 H 0.375 0.625 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 -1.950 -19.524 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.133 5.133 4 C -0.196 4.196 5 C -0.179 4.179 6 N -0.198 5.198 7 C -0.016 4.016 8 C -0.092 4.092 9 C -0.143 4.143 10 C 0.247 3.753 11 O -0.482 6.482 12 N -0.198 5.198 13 C -0.424 4.424 14 H 0.142 0.858 15 C -0.163 4.163 16 N -0.500 5.500 17 Si 0.706 3.294 18 H -0.192 1.192 19 H -0.198 1.198 20 H -0.189 1.189 21 H 0.079 0.921 22 H 0.096 0.904 23 H 0.089 0.911 24 H 0.109 0.891 25 H 0.115 0.885 26 H 0.189 0.811 27 H 0.185 0.815 28 H 0.156 0.844 29 H 0.142 0.858 30 H 0.208 0.792 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.359 -2.114 -18.589 18.712 hybrid contribution 0.353 0.739 -0.822 1.160 sum 0.712 -1.375 -19.411 19.473 Atomic orbital electron populations 1.22169 0.93856 1.03306 1.03498 1.21893 0.95931 0.79776 1.04719 1.45658 1.48199 1.12583 1.06858 1.22749 1.09775 0.94456 0.92618 1.22293 1.06885 0.97132 0.91540 1.70427 1.18345 1.19235 1.11778 1.21761 1.03867 0.86778 0.89181 1.20808 1.02460 1.00457 0.85515 1.22176 0.98735 0.99940 0.93399 1.16506 0.87193 0.86522 0.85037 1.90680 1.51759 1.21289 1.84426 1.42286 1.56374 1.13703 1.07390 1.19590 1.40205 1.02815 0.79793 0.85798 1.25190 0.97316 0.98882 0.94942 1.69573 1.45123 1.36216 0.99059 0.86629 0.79862 0.83872 0.79076 1.19170 1.19815 1.18902 0.92063 0.90409 0.91140 0.89059 0.88499 0.81104 0.81473 0.84376 0.85803 0.79196 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 10.24 37.16 0.38 -1.08 16 2 C 0.10 0.90 6.60 -4.05 -0.03 0.87 16 3 N -0.45 -5.71 2.79 -114.55 -0.32 -6.03 16 4 C -0.06 -0.70 11.57 -16.54 -0.19 -0.89 16 5 C -0.03 -0.36 11.84 -17.94 -0.21 -0.58 16 6 N -0.48 -8.11 10.76 -11.43 -0.12 -8.23 16 7 C 0.24 3.90 7.66 -154.48 -1.18 2.72 16 8 C -0.07 -1.22 9.26 -37.32 -0.35 -1.56 16 9 C -0.12 -2.31 9.43 -39.24 -0.37 -2.68 16 10 C 0.46 11.02 7.52 -14.89 -0.11 10.90 16 11 O -0.59 -16.40 15.68 5.11 0.08 -16.32 16 12 N -0.56 -13.89 5.07 -13.56 -0.07 -13.96 16 13 C -0.29 -8.32 10.16 -15.07 -0.15 -8.47 16 14 H 0.12 3.96 7.37 -52.49 -0.39 3.57 16 15 C 0.04 1.15 5.50 -17.44 -0.10 1.05 16 16 N -0.86 -24.53 13.95 55.51 0.77 -23.76 16 17 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16 18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.26 -5.37 6.52 56.52 0.37 -5.01 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.10 0.89 7.66 -51.93 -0.40 0.49 16 26 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.17 1.73 8.06 -52.49 -0.42 1.30 16 28 H 0.14 2.41 7.02 -52.49 -0.37 2.04 16 29 H 0.12 2.28 7.72 -52.49 -0.41 1.87 16 30 H 0.37 8.21 5.72 -40.82 -0.23 7.97 16 31 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 278.97 15.07 4.20 4.20 Total: -1.00 -33.46 278.97 -5.97 -39.44 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -3.50 Total: 9.83 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -2.31 Total: 0.29 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.26 Total: -51.98 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.08 Total: -16.32 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.46 -5.97 -39.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492280631.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.548 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds