Wall clock time and date at job start Sun Mar 29 2020 21:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38316 * 126.32336 * 2 1 4 4 C 1.46930 * 126.44642 * 0.04237 * 3 2 1 5 5 C 1.35175 * 120.00242 * 180.02562 * 4 3 2 6 6 C 1.41653 * 119.99948 * 180.02562 * 5 4 3 7 7 O 1.21786 * 120.00000 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99518 * 179.97438 * 6 5 4 9 9 C 1.36816 * 119.99666 * 179.97438 * 8 6 5 10 10 H 1.07997 * 120.00011 * 0.02562 * 9 8 6 11 11 C 1.39046 * 120.00060 * 180.02562 * 9 8 6 12 12 N 1.31372 * 120.00059 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 120.00089 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.46868 * 89.99951 * 13 11 9 15 15 H 1.48501 * 109.47347 * 210.00307 * 13 11 9 16 16 H 1.48504 * 109.46541 * 329.99914 * 13 11 9 17 17 C 1.41454 * 107.11027 * 180.02562 * 3 2 1 18 18 N 1.30440 * 108.03854 * 359.97438 * 17 3 2 19 19 N 1.34424 * 126.31732 * 180.02562 * 2 1 3 20 20 C 1.46495 * 125.74592 * 359.71208 * 19 2 1 21 21 H 1.08999 * 109.46862 * 269.99934 * 1 2 3 22 22 H 1.09001 * 109.47167 * 29.99488 * 1 2 3 23 23 H 1.09001 * 109.47868 * 150.00196 * 1 2 3 24 24 H 1.08005 * 120.00202 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.99898 * 359.97438 * 5 4 3 26 26 H 0.96997 * 120.00321 * 0.02562 * 8 6 5 27 27 H 0.97007 * 119.99769 * 179.97438 * 12 11 9 28 28 H 1.08001 * 125.97893 * 180.02562 * 17 3 2 29 29 H 1.09006 * 109.47092 * 89.99787 * 20 19 2 30 30 H 1.08997 * 109.47254 * 210.00325 * 20 19 2 31 31 H 1.08999 * 109.46839 * 330.00410 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3263 1.1144 0.0000 4 6 1.8910 2.5178 0.0009 5 6 2.8089 3.5101 0.0002 6 6 2.3892 4.8630 0.0016 7 8 1.2015 5.1322 0.0029 8 7 3.3045 5.8524 0.0015 9 6 2.8992 7.1591 0.0023 10 1 1.8459 7.3978 0.0035 11 6 3.8433 8.1799 0.0017 12 7 3.4542 9.4346 0.0030 13 14 5.6652 7.7671 -0.0010 14 1 6.1460 7.6586 -1.4018 15 1 6.4169 8.8397 0.6987 16 1 5.8808 6.4747 0.6980 17 6 3.6620 0.6489 -0.0006 18 7 3.6353 -0.6552 -0.0004 19 7 2.3031 -1.0831 -0.0005 20 6 1.8519 -2.4769 0.0049 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3635 -0.8900 -0.5138 24 1 0.8377 2.7565 0.0012 25 1 3.8622 3.2714 -0.0005 26 1 4.2505 5.6380 0.0001 27 1 4.1129 10.1468 0.0029 28 1 4.5488 1.2654 -0.0004 29 1 1.7358 -2.8251 -1.0215 30 1 2.5888 -3.0953 0.5173 31 1 0.8954 -2.5471 0.5227 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492301869.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:46 Heat of formation + Delta-G solvation = 55.516549 kcal Electronic energy + Delta-G solvation = -15464.496052 eV Core-core repulsion = 12748.190696 eV Total energy + Delta-G solvation = -2716.305355 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.20778 -38.41079 -34.42636 -33.81382 -33.01816 -31.69351 -30.94931 -27.16883 -26.83553 -25.00990 -22.56281 -20.67094 -19.40970 -18.96603 -17.77486 -16.45106 -15.98795 -15.78573 -14.91777 -14.40512 -13.89525 -13.61513 -13.53528 -13.38077 -13.09485 -12.77205 -12.67868 -12.65030 -12.22027 -11.79771 -11.46802 -11.23361 -10.59154 -10.48812 -9.99195 -9.98486 -9.52398 -9.36303 -8.48401 -8.17140 -7.58201 -6.35827 -3.77154 1.32895 2.05543 2.37606 3.05287 3.09023 3.16233 3.25504 4.09226 4.33756 4.45966 4.52457 4.78947 4.86689 4.98392 5.07958 5.14076 5.32873 5.35349 5.41212 5.65123 5.68491 5.78577 5.92547 6.31533 6.62508 6.84000 6.97633 7.05513 7.59526 7.66010 8.19164 8.61968 8.96469 9.43759 9.93443 10.76612 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.047781 B = 0.004840 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.866386 B = 5783.838684 C = 6349.257465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.094 3.906 3 C -0.208 4.208 4 C -0.020 4.020 5 C -0.192 4.192 6 C 0.472 3.528 7 O -0.595 6.595 8 N -0.576 5.576 9 C -0.296 4.296 10 H 0.122 0.878 11 C 0.039 3.961 12 N -0.873 5.873 13 Si 0.881 3.119 14 H -0.269 1.269 15 H -0.275 1.275 16 H -0.267 1.267 17 C 0.069 3.931 18 N -0.307 5.307 19 N -0.371 5.371 20 C 0.100 3.900 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.069 0.931 24 H 0.130 0.870 25 H 0.108 0.892 26 H 0.372 0.628 27 H 0.275 0.725 28 H 0.187 0.813 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.627 -21.468 0.061 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.035 4.035 3 C -0.219 4.219 4 C -0.043 4.043 5 C -0.214 4.214 6 C 0.264 3.736 7 O -0.482 6.482 8 N -0.213 5.213 9 C -0.425 4.425 10 H 0.140 0.860 11 C -0.165 4.165 12 N -0.512 5.512 13 Si 0.707 3.293 14 H -0.194 1.194 15 H -0.201 1.201 16 H -0.192 1.192 17 C -0.118 4.118 18 N -0.126 5.126 19 N -0.152 5.152 20 C -0.041 4.041 21 H 0.102 0.898 22 H 0.112 0.888 23 H 0.088 0.912 24 H 0.147 0.853 25 H 0.126 0.874 26 H 0.205 0.795 27 H 0.086 0.914 28 H 0.204 0.796 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.666 -22.248 0.061 22.258 hybrid contribution 1.194 0.586 0.006 1.330 sum 0.528 -21.662 0.066 21.669 Atomic orbital electron populations 1.20500 0.86836 1.04193 1.03635 1.21602 0.94490 0.86921 1.00462 1.19307 0.91822 0.93289 1.17514 1.21317 0.99661 0.87902 0.95432 1.21841 0.99139 0.93846 1.06575 1.16547 0.86507 0.85225 0.85343 1.90669 1.16422 1.84648 1.56457 1.42273 1.07289 1.06957 1.64735 1.19544 0.97103 0.79378 1.46503 0.86049 1.25130 0.98812 0.94982 0.97528 1.69615 1.34897 0.98685 1.47994 0.86634 0.84825 0.78778 0.79086 1.19432 1.20060 1.19205 1.24104 0.97944 0.91525 0.98196 1.77072 0.96138 1.13668 1.25759 1.48177 1.04072 1.05960 1.57005 1.21834 1.00980 0.77987 1.03317 0.89849 0.88847 0.91166 0.85258 0.87428 0.79503 0.91436 0.79614 0.90771 0.89263 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 9.70 36.00 0.35 -0.46 16 2 C 0.09 1.16 7.02 -81.43 -0.57 0.59 16 3 C -0.21 -3.07 6.08 -105.13 -0.64 -3.71 16 4 C -0.02 -0.35 9.34 -37.15 -0.35 -0.69 16 5 C -0.19 -3.62 9.33 -39.37 -0.37 -3.98 16 6 C 0.47 11.46 7.51 -14.96 -0.11 11.35 16 7 O -0.59 -16.72 15.68 5.11 0.08 -16.64 16 8 N -0.58 -14.36 5.07 -13.59 -0.07 -14.42 16 9 C -0.30 -8.53 10.16 -15.03 -0.15 -8.69 16 10 H 0.12 3.97 7.38 -52.49 -0.39 3.58 16 11 C 0.04 1.09 5.50 -17.45 -0.10 0.99 16 12 N -0.87 -25.48 13.95 55.50 0.77 -24.70 16 13 Si 0.88 19.53 27.74 -169.99 -4.72 14.82 16 14 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 17 C 0.07 0.97 11.39 -16.92 -0.19 0.78 16 18 N -0.31 -4.36 12.49 30.90 0.39 -3.97 16 19 N -0.37 -4.41 3.98 -63.23 -0.25 -4.66 16 20 C 0.10 0.68 11.06 59.84 0.66 1.35 16 21 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.09 0.85 7.61 -51.93 -0.40 0.46 16 23 H 0.07 0.43 7.71 -51.93 -0.40 0.03 16 24 H 0.13 2.27 7.02 -52.48 -0.37 1.90 16 25 H 0.11 1.69 6.93 -52.49 -0.36 1.33 16 26 H 0.37 8.12 5.72 -40.82 -0.23 7.89 16 27 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.19 2.19 7.31 -52.49 -0.38 1.81 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.38 7.64 -51.93 -0.40 -0.01 16 LS Contribution 276.79 15.07 4.17 4.17 Total: -1.00 -35.26 276.79 -4.46 -39.72 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -3.36 Total: 8.16 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.47 Total: -2.47 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.84 Total: -47.76 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.08 Total: -16.64 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.72 Total: 14.82 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -35.26 -4.46 -39.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492301869.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.235 kcal (2) G-P(sol) polarization free energy of solvation -35.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds