Wall clock time and date at job start Sun Mar 29 2020 21:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38316 * 126.32336 * 2 1 4 4 C 1.46930 * 126.44642 * 0.04237 * 3 2 1 5 5 C 1.35175 * 120.00242 * 180.02562 * 4 3 2 6 6 C 1.41653 * 119.99948 * 180.02562 * 5 4 3 7 7 O 1.21786 * 120.00000 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99518 * 179.97438 * 6 5 4 9 9 C 1.36816 * 119.99666 * 179.97438 * 8 6 5 10 10 H 1.07997 * 120.00011 * 0.02562 * 9 8 6 11 11 C 1.39046 * 120.00060 * 180.02562 * 9 8 6 12 12 N 1.31372 * 120.00059 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 120.00089 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.46868 * 89.99951 * 13 11 9 15 15 H 1.48501 * 109.47347 * 210.00307 * 13 11 9 16 16 H 1.48504 * 109.46541 * 329.99914 * 13 11 9 17 17 C 1.41454 * 107.11027 * 180.02562 * 3 2 1 18 18 N 1.30440 * 108.03854 * 359.97438 * 17 3 2 19 19 N 1.34424 * 126.31732 * 180.02562 * 2 1 3 20 20 C 1.46495 * 125.74592 * 359.71208 * 19 2 1 21 21 H 1.08999 * 109.46862 * 269.99934 * 1 2 3 22 22 H 1.09001 * 109.47167 * 29.99488 * 1 2 3 23 23 H 1.09001 * 109.47868 * 150.00196 * 1 2 3 24 24 H 1.08005 * 120.00202 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.99898 * 359.97438 * 5 4 3 26 26 H 0.96997 * 120.00321 * 0.02562 * 8 6 5 27 27 H 0.97007 * 119.99769 * 179.97438 * 12 11 9 28 28 H 1.08001 * 125.97893 * 180.02562 * 17 3 2 29 29 H 1.09006 * 109.47092 * 89.99787 * 20 19 2 30 30 H 1.08997 * 109.47254 * 210.00325 * 20 19 2 31 31 H 1.08999 * 109.46839 * 330.00410 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3263 1.1144 0.0000 4 6 1.8910 2.5178 0.0009 5 6 2.8089 3.5101 0.0002 6 6 2.3892 4.8630 0.0016 7 8 1.2015 5.1322 0.0029 8 7 3.3045 5.8524 0.0015 9 6 2.8992 7.1591 0.0023 10 1 1.8459 7.3978 0.0035 11 6 3.8433 8.1799 0.0017 12 7 3.4542 9.4346 0.0030 13 14 5.6652 7.7671 -0.0010 14 1 6.1460 7.6586 -1.4018 15 1 6.4169 8.8397 0.6987 16 1 5.8808 6.4747 0.6980 17 6 3.6620 0.6489 -0.0006 18 7 3.6353 -0.6552 -0.0004 19 7 2.3031 -1.0831 -0.0005 20 6 1.8519 -2.4769 0.0049 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3635 -0.8900 -0.5138 24 1 0.8377 2.7565 0.0012 25 1 3.8622 3.2714 -0.0005 26 1 4.2505 5.6380 0.0001 27 1 4.1129 10.1468 0.0029 28 1 4.5488 1.2654 -0.0004 29 1 1.7358 -2.8251 -1.0215 30 1 2.5888 -3.0953 0.5173 31 1 0.8954 -2.5471 0.5227 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492301869.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:46 Heat of formation + Delta-G solvation = 28.985472 kcal Electronic energy + Delta-G solvation = -15465.646526 eV Core-core repulsion = 12748.190696 eV Total energy + Delta-G solvation = -2717.455829 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.20918 -40.34441 -36.19277 -35.18975 -34.09263 -33.76307 -32.03878 -28.43916 -27.64145 -26.67132 -23.99867 -21.93649 -20.98558 -20.43214 -19.42880 -17.92888 -17.24643 -16.79070 -16.62717 -15.55433 -15.45726 -15.32702 -14.97514 -14.64904 -14.10121 -14.03177 -13.98225 -13.42177 -13.26024 -13.01102 -12.86743 -12.76816 -12.41679 -11.97688 -11.58445 -11.57235 -11.18277 -10.51573 -10.29300 -10.25641 -8.81440 -8.44010 -5.98592 0.06880 0.96846 1.31816 1.38688 1.45343 1.56387 1.95785 2.22616 2.66072 3.11935 3.30470 3.58794 3.68862 4.05318 4.17235 4.33887 4.41696 4.42484 4.58699 4.67041 4.71673 4.80796 4.99306 5.06265 5.40810 5.55292 5.59632 5.70993 5.98767 6.03819 6.59766 6.65002 6.87936 7.40311 7.99517 8.73387 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.047781 B = 0.004840 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.866386 B = 5783.838684 C = 6349.257465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.118 3.882 3 C -0.255 4.255 4 C 0.030 3.970 5 C -0.231 4.231 6 C 0.479 3.521 7 O -0.644 6.644 8 N -0.581 5.581 9 C -0.329 4.329 10 H 0.058 0.942 11 C -0.013 4.013 12 N -0.928 5.928 13 Si 0.964 3.036 14 H -0.255 1.255 15 H -0.271 1.271 16 H -0.234 1.234 17 C 0.070 3.930 18 N -0.331 5.331 19 N -0.367 5.367 20 C 0.086 3.914 21 H 0.100 0.900 22 H 0.086 0.914 23 H 0.103 0.897 24 H 0.119 0.881 25 H 0.144 0.856 26 H 0.390 0.610 27 H 0.281 0.719 28 H 0.203 0.797 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 -25.375 0.117 25.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.014 4.014 3 C -0.266 4.266 4 C 0.008 3.992 5 C -0.253 4.253 6 C 0.273 3.727 7 O -0.534 6.534 8 N -0.219 5.219 9 C -0.458 4.458 10 H 0.076 0.924 11 C -0.212 4.212 12 N -0.567 5.567 13 Si 0.783 3.217 14 H -0.180 1.180 15 H -0.196 1.196 16 H -0.157 1.157 17 C -0.116 4.116 18 N -0.151 5.151 19 N -0.147 5.147 20 C -0.053 4.053 21 H 0.118 0.882 22 H 0.105 0.895 23 H 0.121 0.879 24 H 0.136 0.864 25 H 0.161 0.839 26 H 0.226 0.774 27 H 0.091 0.909 28 H 0.220 0.780 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.778 -26.220 0.117 26.232 hybrid contribution 0.461 1.431 -0.017 1.503 sum 1.240 -24.789 0.100 24.820 Atomic orbital electron populations 1.20708 0.84158 1.05563 1.05096 1.22154 0.96044 0.86465 0.96709 1.19248 0.93041 0.92514 1.21784 1.21422 0.98845 0.89150 0.89830 1.21598 1.01388 0.90672 1.11595 1.17466 0.85654 0.87145 0.82440 1.90631 1.18775 1.85897 1.58122 1.42009 1.08296 1.05425 1.66170 1.19087 0.94845 0.81998 1.49895 0.92393 1.26156 1.05104 0.94108 0.95881 1.69780 1.37367 1.00206 1.49392 0.85373 0.76119 0.80047 0.80112 1.17956 1.19552 1.15709 1.24421 0.98305 0.91760 0.97144 1.77056 0.97704 1.13676 1.26684 1.48646 1.03327 1.07615 1.55065 1.22314 1.02555 0.75350 1.05093 0.88160 0.89506 0.87862 0.86356 0.83863 0.77409 0.90913 0.78006 0.89022 0.88561 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 9.70 71.23 0.69 -0.61 16 2 C 0.12 2.51 7.02 42.18 0.30 2.81 16 3 C -0.25 -6.89 6.08 -20.19 -0.12 -7.02 16 4 C 0.03 0.99 9.34 23.84 0.22 1.21 16 5 C -0.23 -8.51 9.33 22.41 0.21 -8.30 16 6 C 0.48 23.89 7.51 85.08 0.64 24.53 16 7 O -0.64 -38.11 15.68 -4.62 -0.07 -38.18 16 8 N -0.58 -29.53 5.07 -315.10 -1.60 -31.13 16 9 C -0.33 -20.06 10.16 84.11 0.85 -19.20 16 10 H 0.06 4.16 7.38 -2.91 -0.02 4.14 16 11 C -0.01 -0.74 5.50 84.96 0.47 -0.28 16 12 N -0.93 -56.68 13.95 21.68 0.30 -56.37 16 13 Si 0.96 40.00 27.74 68.60 1.90 41.90 16 14 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 15 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 16 H -0.23 -8.37 6.52 99.48 0.65 -7.72 16 17 C 0.07 1.78 11.39 85.69 0.98 2.76 16 18 N -0.33 -8.46 12.49 -56.17 -0.70 -9.16 16 19 N -0.37 -7.34 3.98 -353.97 -1.41 -8.75 16 20 C 0.09 0.79 11.06 127.77 1.41 2.20 16 21 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.09 1.35 7.61 -2.39 -0.02 1.33 16 23 H 0.10 0.74 7.71 -2.39 -0.02 0.72 16 24 H 0.12 4.12 7.02 -2.91 -0.02 4.10 16 25 H 0.14 4.17 6.93 -2.91 -0.02 4.15 16 26 H 0.39 16.61 5.72 -92.71 -0.53 16.08 16 27 H 0.28 15.61 8.31 -92.70 -0.77 14.84 16 28 H 0.20 4.19 7.31 -2.91 -0.02 4.17 16 29 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.12 0.40 7.64 -2.39 -0.02 0.39 16 Total: -1.00 -83.16 276.79 4.63 -78.53 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.57 Total: 25.05 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 5.65 Total: -1.89 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -3.41 Total: -105.41 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -0.07 Total: -38.18 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.90 Total: 41.90 kcal Total: -83.16 4.63 -78.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492301869.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.515 kcal (2) G-P(sol) polarization free energy of solvation -83.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds