Wall clock time and date at job start Sun Mar 29 2020 21:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47410 * 2 1 4 4 N 1.46502 * 109.46885 * 295.00506 * 3 2 1 5 5 C 1.34779 * 119.99903 * 179.97438 * 4 3 2 6 6 O 1.21775 * 119.99753 * 359.97438 * 5 4 3 7 7 C 1.41579 * 120.00257 * 179.97438 * 5 4 3 8 8 C 1.35538 * 120.00038 * 188.32953 * 7 5 4 9 9 C 1.41801 * 119.99551 * 31.84928 * 8 7 5 10 10 C 1.38065 * 126.94308 * 187.16399 * 9 8 7 11 11 N 1.33323 * 107.57383 * 180.23979 * 10 9 8 12 12 C 1.30821 * 109.78759 * 359.56815 * 11 10 9 13 13 N 1.34660 * 109.43457 * 0.43774 * 12 11 10 14 14 H 0.96996 * 126.44894 * 179.74820 * 13 12 11 15 15 C 1.50700 * 109.47308 * 120.00141 * 2 1 3 16 16 N 1.27942 * 120.00130 * 334.99981 * 15 2 1 17 17 Si 1.86795 * 119.99903 * 154.99687 * 15 2 1 18 18 H 1.48497 * 109.47273 * 90.00259 * 17 15 2 19 19 H 1.48505 * 109.47338 * 210.00136 * 17 15 2 20 20 H 1.48501 * 109.47347 * 330.00087 * 17 15 2 21 21 H 1.08994 * 109.47205 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46465 * 299.99809 * 1 2 3 23 23 H 1.08995 * 109.47338 * 59.99736 * 1 2 3 24 24 H 1.09001 * 109.46902 * 240.00386 * 2 1 3 25 25 H 1.08997 * 109.47394 * 175.00440 * 3 2 1 26 26 H 1.09001 * 109.46663 * 55.00120 * 3 2 1 27 27 H 0.96994 * 120.00495 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.99529 * 8.33999 * 7 5 4 29 29 H 1.08000 * 120.00085 * 211.84367 * 8 7 5 30 30 H 1.07998 * 126.21030 * 359.97438 * 10 9 8 31 31 H 1.07999 * 125.28177 * 180.15810 * 12 11 10 32 32 H 0.97000 * 120.00383 * 180.02562 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.6524 2.0975 -1.2518 5 6 1.9956 3.3817 -1.4748 6 8 2.6274 3.9976 -0.6355 7 6 1.6214 4.0145 -2.6847 8 6 2.1064 5.2442 -2.9845 9 6 3.4000 5.6228 -2.5441 10 6 3.9786 6.8722 -2.6459 11 7 5.1996 6.7948 -2.1160 12 6 5.4176 5.5802 -1.6815 13 7 4.3362 4.8160 -1.9260 14 1 4.2336 3.8762 -1.7089 15 6 2.0324 -0.7104 1.2304 16 7 1.2989 -0.7739 2.2768 17 14 3.7260 -1.4985 1.2278 18 1 4.7327 -0.5099 1.6908 19 1 3.7279 -2.6708 2.1394 20 1 4.0638 -1.9413 -0.1488 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 3.1264 1.4438 0.0895 26 1 1.6055 1.9815 0.8419 27 1 1.1488 1.6071 -1.9201 28 1 0.9495 3.5175 -3.3687 29 1 1.5076 5.9356 -3.5587 30 1 3.5261 7.7514 -3.0802 31 1 6.3258 5.2418 -1.2051 32 1 1.6224 -1.2308 3.0689 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492759957.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:00 Heat of formation + Delta-G solvation = 76.488154 kcal Electronic energy + Delta-G solvation = -16409.985766 eV Core-core repulsion = 13680.934068 eV Total energy + Delta-G solvation = -2729.051698 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.114 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.95160 -40.91879 -38.56633 -35.85094 -34.98192 -33.22804 -32.72417 -29.94485 -27.81388 -25.59864 -23.96864 -22.36672 -22.04248 -21.12662 -20.24798 -19.13290 -17.99094 -17.76471 -17.00209 -16.26500 -15.86303 -15.69704 -15.35084 -15.19094 -14.98157 -14.68232 -14.38771 -14.02980 -13.94220 -13.84624 -13.17504 -13.07113 -12.42973 -12.32601 -12.10758 -11.51165 -11.32338 -11.18088 -10.87166 -10.56934 -10.16292 -9.98627 -8.73576 -0.57886 0.62867 0.90433 1.24341 1.53805 1.55115 1.69673 2.12205 2.19913 2.33017 2.49378 3.39452 3.67382 3.75258 3.82668 3.94154 4.02843 4.15118 4.23322 4.47741 4.50509 4.52801 4.63261 4.72242 4.82135 4.94222 5.00271 5.09721 5.28857 5.36936 5.44419 5.74500 6.41770 6.47851 6.72333 7.10770 7.16010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C 0.129 3.871 4 N -0.725 5.725 5 C 0.546 3.454 6 O -0.554 6.554 7 C -0.291 4.291 8 C 0.062 3.938 9 C -0.038 4.038 10 C 0.041 3.959 11 N -0.504 5.504 12 C 0.211 3.789 13 N -0.525 5.525 14 H 0.423 0.577 15 C -0.002 4.002 16 N -0.618 5.618 17 Si 0.926 3.074 18 H -0.237 1.237 19 H -0.245 1.245 20 H -0.233 1.233 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.403 0.597 28 H 0.139 0.861 29 H 0.153 0.847 30 H 0.179 0.821 31 H 0.208 0.792 32 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 -4.714 -3.226 5.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 C 0.004 3.996 4 N -0.377 5.377 5 C 0.339 3.661 6 O -0.436 6.436 7 C -0.313 4.313 8 C 0.041 3.959 9 C -0.152 4.152 10 C -0.114 4.114 11 N -0.223 5.223 12 C -0.072 4.072 13 N -0.129 5.129 14 H 0.267 0.733 15 C -0.252 4.252 16 N -0.231 5.231 17 Si 0.742 3.258 18 H -0.160 1.160 19 H -0.168 1.168 20 H -0.155 1.155 21 H 0.078 0.922 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.114 0.886 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.239 0.761 28 H 0.157 0.843 29 H 0.171 0.829 30 H 0.196 0.804 31 H 0.225 0.775 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.301 -3.752 -2.279 4.400 hybrid contribution -0.578 -1.793 0.140 1.890 sum -0.879 -5.545 -2.139 6.008 Atomic orbital electron populations 1.21690 0.92694 1.02573 1.02373 1.20677 0.98234 0.94605 0.95994 1.21246 0.99961 0.91209 0.87184 1.45992 1.58439 1.12556 1.20685 1.17246 0.79309 0.81167 0.88400 1.90875 1.40969 1.63775 1.47969 1.21830 1.11764 0.98462 0.99264 1.20779 0.89398 0.93773 0.91939 1.19188 0.93261 0.93161 1.09630 1.23188 0.91577 0.95583 1.01064 1.70131 1.17508 1.18842 1.15803 1.25127 0.93492 0.87230 1.01362 1.43819 1.12855 1.13635 1.42612 0.73324 1.30041 1.03775 0.96281 0.95123 1.68145 1.37514 1.14769 1.02636 0.85823 0.75751 0.80834 0.83433 1.15992 1.16752 1.15510 0.92186 0.91114 0.92784 0.88612 0.91325 0.90520 0.76146 0.84345 0.82947 0.80359 0.77515 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.25 8.55 37.16 0.32 0.57 16 2 C -0.08 0.20 2.35 -91.77 -0.22 -0.02 16 3 C 0.13 -0.18 5.02 -4.04 -0.02 -0.20 16 4 N -0.73 1.46 5.27 -63.23 -0.33 1.12 16 5 C 0.55 0.27 6.40 -14.99 -0.10 0.18 16 6 O -0.55 -2.23 12.66 5.12 0.06 -2.16 16 7 C -0.29 0.38 9.73 -39.27 -0.38 0.00 16 8 C 0.06 -0.05 9.79 -39.19 -0.38 -0.44 16 9 C -0.04 -0.07 5.98 -83.71 -0.50 -0.57 16 10 C 0.04 0.11 11.92 -16.97 -0.20 -0.10 16 11 N -0.50 -2.21 11.19 -14.05 -0.16 -2.37 16 12 C 0.21 0.43 12.99 -90.45 -1.18 -0.74 16 13 N -0.53 -0.88 4.58 -11.76 -0.05 -0.93 16 14 H 0.42 0.31 6.23 -40.82 -0.25 0.06 16 15 C 0.00 0.00 4.83 -13.90 -0.07 -0.06 16 16 N -0.62 0.12 12.70 56.23 0.71 0.83 16 17 Si 0.93 -2.14 29.21 -169.99 -4.96 -7.10 16 18 H -0.24 0.30 7.11 56.52 0.40 0.70 16 19 H -0.24 0.31 7.11 56.52 0.40 0.71 16 20 H -0.23 0.52 7.11 56.52 0.40 0.93 16 21 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 22 H 0.07 0.01 7.80 -51.93 -0.40 -0.39 16 23 H 0.05 -0.17 7.18 -51.93 -0.37 -0.54 16 24 H 0.10 -0.44 7.85 -51.93 -0.41 -0.85 16 25 H 0.07 -0.11 7.83 -51.93 -0.41 -0.52 16 26 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.40 -1.81 7.61 -40.82 -0.31 -2.12 16 28 H 0.14 -0.56 8.06 -52.49 -0.42 -0.98 16 29 H 0.15 -0.59 8.06 -52.49 -0.42 -1.02 16 30 H 0.18 -0.06 8.06 -52.49 -0.42 -0.48 16 31 H 0.21 -0.34 8.06 -52.49 -0.42 -0.76 16 32 H 0.34 -0.51 8.23 -40.82 -0.34 -0.85 16 LS Contribution 275.74 15.07 4.16 4.16 Total: 0.00 -7.70 275.74 -7.13 -14.83 By element: Atomic # 1 Polarization: -3.16 SS G_CDS: -3.83 Total: -6.99 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.72 Total: -1.38 kcal Atomic # 7 Polarization: -1.52 SS G_CDS: 0.17 Total: -1.35 kcal Atomic # 8 Polarization: -2.23 SS G_CDS: 0.06 Total: -2.16 kcal Atomic # 14 Polarization: -2.14 SS G_CDS: -4.96 Total: -7.10 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -7.70 -7.13 -14.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492759957.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.314 kcal (2) G-P(sol) polarization free energy of solvation -7.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds