Wall clock time and date at job start Sun Mar 29 2020 21:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47410 * 2 1 4 4 N 1.46502 * 109.46885 * 295.00506 * 3 2 1 5 5 C 1.34779 * 119.99903 * 179.97438 * 4 3 2 6 6 O 1.21775 * 119.99753 * 359.97438 * 5 4 3 7 7 C 1.41579 * 120.00257 * 179.97438 * 5 4 3 8 8 C 1.35538 * 120.00038 * 188.32953 * 7 5 4 9 9 C 1.41801 * 119.99551 * 31.84928 * 8 7 5 10 10 C 1.38065 * 126.94308 * 187.16399 * 9 8 7 11 11 N 1.33323 * 107.57383 * 180.23979 * 10 9 8 12 12 C 1.30821 * 109.78759 * 359.56815 * 11 10 9 13 13 N 1.34660 * 109.43457 * 0.43774 * 12 11 10 14 14 H 0.96996 * 126.44894 * 179.74820 * 13 12 11 15 15 C 1.50700 * 109.47308 * 120.00141 * 2 1 3 16 16 N 1.27942 * 120.00130 * 334.99981 * 15 2 1 17 17 Si 1.86795 * 119.99903 * 154.99687 * 15 2 1 18 18 H 1.48497 * 109.47273 * 90.00259 * 17 15 2 19 19 H 1.48505 * 109.47338 * 210.00136 * 17 15 2 20 20 H 1.48501 * 109.47347 * 330.00087 * 17 15 2 21 21 H 1.08994 * 109.47205 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46465 * 299.99809 * 1 2 3 23 23 H 1.08995 * 109.47338 * 59.99736 * 1 2 3 24 24 H 1.09001 * 109.46902 * 240.00386 * 2 1 3 25 25 H 1.08997 * 109.47394 * 175.00440 * 3 2 1 26 26 H 1.09001 * 109.46663 * 55.00120 * 3 2 1 27 27 H 0.96994 * 120.00495 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.99529 * 8.33999 * 7 5 4 29 29 H 1.08000 * 120.00085 * 211.84367 * 8 7 5 30 30 H 1.07998 * 126.21030 * 359.97438 * 10 9 8 31 31 H 1.07999 * 125.28177 * 180.15810 * 12 11 10 32 32 H 0.97000 * 120.00383 * 180.02562 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.6524 2.0975 -1.2518 5 6 1.9956 3.3817 -1.4748 6 8 2.6274 3.9976 -0.6355 7 6 1.6214 4.0145 -2.6847 8 6 2.1064 5.2442 -2.9845 9 6 3.4000 5.6228 -2.5441 10 6 3.9786 6.8722 -2.6459 11 7 5.1996 6.7948 -2.1160 12 6 5.4176 5.5802 -1.6815 13 7 4.3362 4.8160 -1.9260 14 1 4.2336 3.8762 -1.7089 15 6 2.0324 -0.7104 1.2304 16 7 1.2989 -0.7739 2.2768 17 14 3.7260 -1.4985 1.2278 18 1 4.7327 -0.5099 1.6908 19 1 3.7279 -2.6708 2.1394 20 1 4.0638 -1.9413 -0.1488 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 3.1264 1.4438 0.0895 26 1 1.6055 1.9815 0.8419 27 1 1.1488 1.6071 -1.9201 28 1 0.9495 3.5175 -3.3687 29 1 1.5076 5.9356 -3.5587 30 1 3.5261 7.7514 -3.0802 31 1 6.3258 5.2418 -1.2051 32 1 1.6224 -1.2308 3.0689 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492759957.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:00 Heat of formation + Delta-G solvation = 78.041231 kcal Electronic energy + Delta-G solvation = -16409.918419 eV Core-core repulsion = 13680.934068 eV Total energy + Delta-G solvation = -2728.984351 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 236.114 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.01345 -40.93010 -38.47437 -35.79605 -34.98003 -33.28886 -32.66761 -29.95328 -27.72966 -25.53053 -23.92357 -22.41037 -22.10076 -21.09022 -20.18179 -19.09920 -17.87672 -17.75255 -16.92194 -16.24610 -15.92710 -15.67834 -15.33025 -15.11636 -14.90788 -14.58466 -14.39951 -13.97165 -13.86814 -13.79318 -13.07909 -12.92555 -12.30466 -12.18602 -11.94942 -11.43429 -11.38469 -11.25126 -10.98736 -10.61236 -10.14228 -9.87410 -8.74607 -0.52717 0.75230 1.05898 1.41621 1.49477 1.70633 1.84258 2.06445 2.25455 2.31262 2.51284 3.55068 3.76965 3.81689 3.98477 4.04485 4.12369 4.24835 4.33404 4.48734 4.63466 4.65386 4.73154 4.83659 4.87056 5.09032 5.14488 5.20664 5.36907 5.48183 5.49231 5.69584 6.44001 6.55220 6.86370 7.02105 7.21638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 C 0.132 3.868 4 N -0.710 5.710 5 C 0.537 3.463 6 O -0.594 6.594 7 C -0.280 4.280 8 C 0.050 3.950 9 C -0.042 4.042 10 C 0.014 3.986 11 N -0.543 5.543 12 C 0.197 3.803 13 N -0.525 5.525 14 H 0.426 0.574 15 C -0.002 4.002 16 N -0.646 5.646 17 Si 0.965 3.035 18 H -0.254 1.254 19 H -0.261 1.261 20 H -0.224 1.224 21 H 0.057 0.943 22 H 0.046 0.954 23 H 0.069 0.931 24 H 0.126 0.874 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.418 0.582 28 H 0.172 0.828 29 H 0.184 0.816 30 H 0.197 0.803 31 H 0.233 0.767 32 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.826 -5.663 -4.571 7.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.093 4.093 3 C 0.006 3.994 4 N -0.361 5.361 5 C 0.331 3.669 6 O -0.479 6.479 7 C -0.302 4.302 8 C 0.029 3.971 9 C -0.157 4.157 10 C -0.140 4.140 11 N -0.263 5.263 12 C -0.086 4.086 13 N -0.129 5.129 14 H 0.270 0.730 15 C -0.251 4.251 16 N -0.259 5.259 17 Si 0.781 3.219 18 H -0.178 1.178 19 H -0.185 1.185 20 H -0.145 1.145 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.088 0.912 24 H 0.144 0.856 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.256 0.744 28 H 0.189 0.811 29 H 0.201 0.799 30 H 0.214 0.786 31 H 0.249 0.751 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.980 -4.730 -3.651 6.055 hybrid contribution -0.425 -1.556 0.599 1.721 sum -1.405 -6.286 -3.053 7.128 Atomic orbital electron populations 1.21652 0.93148 1.02309 1.01968 1.20759 0.97813 0.93923 0.96766 1.21154 0.99986 0.91613 0.86615 1.45873 1.57702 1.11920 1.20634 1.17648 0.78873 0.81611 0.88748 1.90865 1.42853 1.64822 1.49398 1.22110 1.11547 0.97970 0.98589 1.21186 0.88751 0.94573 0.92573 1.19638 0.94264 0.92902 1.08869 1.23586 0.91538 0.96838 1.02074 1.70079 1.18788 1.20195 1.17191 1.25636 0.94495 0.86949 1.01526 1.43861 1.12847 1.13781 1.42380 0.72979 1.30340 1.04124 0.95685 0.94971 1.68185 1.38572 1.15798 1.03347 0.85265 0.74176 0.79233 0.83209 1.17794 1.18508 1.14530 0.92350 0.93505 0.91184 0.85641 0.91063 0.93106 0.74374 0.81052 0.79900 0.78648 0.75085 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.56 8.55 71.98 0.62 1.18 16 2 C -0.07 0.44 2.35 -11.54 -0.03 0.41 16 3 C 0.13 -0.38 5.02 86.38 0.43 0.05 16 4 N -0.71 3.62 5.27 -472.15 -2.49 1.13 16 5 C 0.54 0.21 6.40 85.07 0.54 0.75 16 6 O -0.59 -5.15 12.66 -4.59 -0.06 -5.21 16 7 C -0.28 1.21 9.73 22.47 0.22 1.43 16 8 C 0.05 -0.14 9.79 22.53 0.22 0.09 16 9 C -0.04 -0.16 5.98 38.98 0.23 0.07 16 10 C 0.01 0.08 11.92 84.43 1.01 1.09 16 11 N -0.54 -5.57 11.19 -198.38 -2.22 -7.79 16 12 C 0.20 1.05 12.99 180.29 2.34 3.39 16 13 N -0.52 -2.16 4.58 -191.13 -0.88 -3.04 16 14 H 0.43 0.90 6.23 -92.71 -0.58 0.32 16 15 C 0.00 0.01 4.83 88.67 0.43 0.44 16 16 N -0.65 -0.28 12.70 24.11 0.31 0.03 16 17 Si 0.96 -4.76 29.21 68.60 2.00 -2.76 16 18 H -0.25 0.55 7.11 99.48 0.71 1.26 16 19 H -0.26 0.59 7.11 99.48 0.71 1.30 16 20 H -0.22 1.41 7.11 99.48 0.71 2.12 16 21 H 0.06 -0.21 8.14 -2.39 -0.02 -0.22 16 22 H 0.05 0.05 7.80 -2.38 -0.02 0.03 16 23 H 0.07 -0.54 7.18 -2.39 -0.02 -0.55 16 24 H 0.13 -1.47 7.85 -2.39 -0.02 -1.48 16 25 H 0.07 -0.22 7.83 -2.39 -0.02 -0.24 16 26 H 0.05 0.14 8.14 -2.39 -0.02 0.13 16 27 H 0.42 -4.69 7.61 -92.71 -0.71 -5.40 16 28 H 0.17 -1.94 8.06 -2.91 -0.02 -1.97 16 29 H 0.18 -1.77 8.06 -2.91 -0.02 -1.79 16 30 H 0.20 0.04 8.06 -2.91 -0.02 0.02 16 31 H 0.23 -0.53 8.06 -2.91 -0.02 -0.56 16 32 H 0.34 -0.66 8.23 -92.71 -0.76 -1.42 16 Total: 0.00 -19.75 275.74 2.55 -17.20 By element: Atomic # 1 Polarization: -8.33 SS G_CDS: -0.13 Total: -8.46 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 6.02 Total: 8.90 kcal Atomic # 7 Polarization: -4.39 SS G_CDS: -5.28 Total: -9.67 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.06 Total: -5.21 kcal Atomic # 14 Polarization: -4.76 SS G_CDS: 2.00 Total: -2.76 kcal Total: -19.75 2.55 -17.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492759957.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.241 kcal (2) G-P(sol) polarization free energy of solvation -19.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds