Wall clock time and date at job start Sun Mar 29 2020 22:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46495 * 2 1 4 4 C 1.50693 * 109.46876 * 120.00031 * 2 1 3 5 5 H 1.08002 * 120.00307 * 84.23318 * 4 2 1 6 6 C 1.37886 * 119.99969 * 264.22382 * 4 2 1 7 7 N 1.31516 * 119.99815 * 169.93003 * 6 4 2 8 8 Si 1.86790 * 119.99960 * 349.93857 * 6 4 2 9 9 H 1.48504 * 109.47187 * 277.45675 * 8 6 4 10 10 H 1.48498 * 109.47568 * 37.45720 * 8 6 4 11 11 H 1.48507 * 109.47170 * 157.46013 * 8 6 4 12 12 N 1.46497 * 109.46931 * 240.00161 * 2 1 3 13 13 C 1.34777 * 119.99888 * 84.99964 * 12 2 1 14 14 O 1.21774 * 120.00113 * 0.02562 * 13 12 2 15 15 C 1.41585 * 119.99768 * 179.97438 * 13 12 2 16 16 C 1.35535 * 119.99660 * 189.34095 * 15 13 12 17 17 C 1.41793 * 120.00067 * 29.49955 * 16 15 13 18 18 C 1.38071 * 126.94813 * 188.71537 * 17 16 15 19 19 N 1.33320 * 107.58064 * 180.02562 * 18 17 16 20 20 C 1.30828 * 109.78411 * 359.97438 * 19 18 17 21 21 N 1.34669 * 109.43564 * 359.72923 * 20 19 18 22 22 H 0.96991 * 126.45239 * 180.26861 * 21 20 19 23 23 H 1.08999 * 109.47094 * 174.23760 * 1 2 3 24 24 H 1.09002 * 109.47437 * 294.23375 * 1 2 3 25 25 H 1.09003 * 109.47701 * 54.23400 * 1 2 3 26 26 H 0.96998 * 119.99796 * 180.02562 * 7 6 4 27 27 H 0.96991 * 119.99874 * 264.99917 * 12 2 1 28 28 H 1.07997 * 119.99885 * 9.34876 * 15 13 12 29 29 H 1.08005 * 119.99646 * 209.49610 * 16 15 13 30 30 H 1.08000 * 126.20977 * 0.03636 * 18 17 16 31 31 H 1.07996 * 125.28032 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.1237 -1.7865 1.2332 6 6 2.3753 0.0135 2.3527 7 7 2.6226 -0.6073 3.4854 8 14 2.4887 1.8759 2.2642 9 1 3.8136 2.2658 1.7184 10 1 1.4160 2.3956 1.3785 11 1 2.3266 2.4469 3.6255 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3571 14 8 1.8578 1.1635 -2.4116 15 6 2.6194 -0.6855 -3.5130 16 6 2.9290 0.0236 -4.6258 17 6 3.3885 1.3600 -4.5099 18 6 3.5834 2.2626 -5.5365 19 7 4.0212 3.3996 -4.9952 20 6 4.1119 3.2659 -3.6970 21 7 3.7258 2.0244 -3.3463 22 1 3.6934 1.6635 -2.4466 23 1 -0.3633 -1.0225 -0.1032 24 1 -0.3634 0.4218 0.9371 25 1 -0.3634 0.6006 -0.8338 26 1 2.8636 -0.0980 4.2750 27 1 2.2490 -1.6316 -1.1526 28 1 2.7329 -1.7594 -3.5080 29 1 2.8257 -0.4293 -5.6009 30 1 3.4121 2.0806 -6.5871 31 1 4.4404 4.0338 -3.0123 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493111593.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:08 Heat of formation + Delta-G solvation = 53.267961 kcal Electronic energy + Delta-G solvation = -16351.572576 eV Core-core repulsion = 13635.169715 eV Total energy + Delta-G solvation = -2716.402861 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.83578 -39.32056 -35.29834 -33.69705 -32.54281 -31.97055 -30.17446 -28.35521 -25.43687 -24.03876 -21.62810 -20.96962 -20.09585 -19.53414 -18.25388 -16.92425 -16.11013 -15.47811 -14.75059 -14.47522 -14.34068 -14.21096 -13.59734 -13.30462 -12.84630 -12.65414 -12.58069 -12.47972 -11.58921 -11.16195 -10.97396 -10.73121 -10.24002 -9.98212 -9.93284 -9.65091 -9.36121 -9.26331 -8.74206 -8.26301 -7.59497 -6.34525 -4.37539 0.64771 2.72502 3.14207 3.24170 3.27344 3.29252 3.45285 3.75372 4.12482 4.21324 4.77206 5.01766 5.12097 5.15972 5.43368 5.51764 5.66992 5.96771 6.18766 6.26992 6.45960 6.58149 6.59991 6.79807 6.83230 7.10036 7.25378 7.43902 7.60517 8.02542 8.14723 8.45083 8.66577 8.82617 9.27446 10.77242 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.031376 B = 0.007519 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.174285 B = 3722.758178 C = 4256.612795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.229 3.771 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.079 0.921 6 C 0.082 3.918 7 N -0.884 5.884 8 Si 0.873 3.127 9 H -0.274 1.274 10 H -0.261 1.261 11 H -0.285 1.285 12 N -0.695 5.695 13 C 0.525 3.475 14 O -0.573 6.573 15 C -0.256 4.256 16 C 0.023 3.977 17 C -0.018 4.018 18 C 0.017 3.983 19 N -0.509 5.509 20 C 0.196 3.804 21 N -0.516 5.516 22 H 0.428 0.572 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.029 0.971 26 H 0.269 0.731 27 H 0.395 0.605 28 H 0.134 0.866 29 H 0.146 0.854 30 H 0.173 0.827 31 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.042 0.847 -13.285 13.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.127 3.873 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.520 5.520 8 Si 0.700 3.300 9 H -0.199 1.199 10 H -0.186 1.186 11 H -0.210 1.210 12 N -0.341 5.341 13 C 0.315 3.685 14 O -0.457 6.457 15 C -0.278 4.278 16 C 0.002 3.998 17 C -0.134 4.134 18 C -0.138 4.138 19 N -0.228 5.228 20 C -0.087 4.087 21 N -0.121 5.121 22 H 0.274 0.726 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.079 0.921 27 H 0.229 0.771 28 H 0.152 0.848 29 H 0.164 0.836 30 H 0.191 0.809 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.074 2.390 -13.400 13.769 hybrid contribution -0.158 -0.522 1.125 1.251 sum 1.915 1.868 -12.275 12.563 Atomic orbital electron populations 1.22209 0.98451 1.00074 0.99845 1.19180 0.91168 0.94210 0.82783 0.93255 1.20988 1.45537 0.95556 0.95133 0.90331 1.24954 0.93783 0.98593 0.94980 1.69896 1.45269 1.36463 1.00356 0.86907 0.79543 0.85931 0.77655 1.19921 1.18568 1.21045 1.46785 1.63438 1.14149 1.09707 1.17359 0.79899 0.87213 0.84027 1.90776 1.53778 1.15771 1.85421 1.22186 1.08922 1.01334 0.95372 1.20599 0.90578 0.90031 0.98597 1.19161 1.11643 0.96001 0.86608 1.22959 1.03090 0.89039 0.98707 1.70021 1.20400 1.25929 1.06436 1.24957 1.02611 0.87599 0.93554 1.44021 1.45641 1.11912 1.10529 0.72606 0.93661 0.92632 0.95185 0.92123 0.77115 0.84805 0.83613 0.80940 0.77977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.47 37.16 0.35 -2.82 16 2 C 0.23 5.21 2.34 -69.09 -0.16 5.05 16 3 H 0.05 1.21 4.54 -51.93 -0.24 0.97 16 4 C -0.53 -13.85 9.02 -34.44 -0.31 -14.16 16 5 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 6 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 7 N -0.88 -25.35 13.96 55.43 0.77 -24.57 16 8 Si 0.87 20.70 27.08 -169.99 -4.60 16.10 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.26 -6.16 6.71 56.52 0.38 -5.78 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.69 -13.16 5.06 -57.84 -0.29 -13.46 16 13 C 0.52 9.40 6.36 -14.98 -0.10 9.30 16 14 O -0.57 -11.91 12.17 5.12 0.06 -11.85 16 15 C -0.26 -3.48 9.75 -39.27 -0.38 -3.86 16 16 C 0.02 0.29 9.82 -39.19 -0.38 -0.10 16 17 C -0.02 -0.27 5.97 -83.71 -0.50 -0.77 16 18 C 0.02 0.24 11.91 -16.97 -0.20 0.04 16 19 N -0.51 -8.03 11.19 -14.05 -0.16 -8.19 16 20 C 0.20 2.92 12.99 -90.44 -1.17 1.74 16 21 N -0.52 -8.23 4.53 -11.76 -0.05 -8.29 16 22 H 0.43 7.28 6.16 -40.82 -0.25 7.03 16 23 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 27 H 0.40 6.63 8.55 -40.82 -0.35 6.28 16 28 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.15 1.20 8.06 -52.48 -0.42 0.77 16 30 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.20 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 270.29 15.07 4.07 4.07 Total: -1.00 -31.69 270.29 -6.53 -38.22 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -3.38 Total: 11.42 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -2.96 Total: -3.46 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.27 Total: -54.50 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.06 Total: -11.85 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.60 Total: 16.10 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.69 -6.53 -38.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493111593.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.493 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds