Wall clock time and date at job start Sun Mar 29 2020 22:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46495 * 2 1 4 4 C 1.50693 * 109.46876 * 120.00031 * 2 1 3 5 5 H 1.08002 * 120.00307 * 84.23318 * 4 2 1 6 6 C 1.37886 * 119.99969 * 264.22382 * 4 2 1 7 7 N 1.31516 * 119.99815 * 169.93003 * 6 4 2 8 8 Si 1.86790 * 119.99960 * 349.93857 * 6 4 2 9 9 H 1.48504 * 109.47187 * 277.45675 * 8 6 4 10 10 H 1.48498 * 109.47568 * 37.45720 * 8 6 4 11 11 H 1.48507 * 109.47170 * 157.46013 * 8 6 4 12 12 N 1.46497 * 109.46931 * 240.00161 * 2 1 3 13 13 C 1.34777 * 119.99888 * 84.99964 * 12 2 1 14 14 O 1.21774 * 120.00113 * 0.02562 * 13 12 2 15 15 C 1.41585 * 119.99768 * 179.97438 * 13 12 2 16 16 C 1.35535 * 119.99660 * 189.34095 * 15 13 12 17 17 C 1.41793 * 120.00067 * 29.49955 * 16 15 13 18 18 C 1.38071 * 126.94813 * 188.71537 * 17 16 15 19 19 N 1.33320 * 107.58064 * 180.02562 * 18 17 16 20 20 C 1.30828 * 109.78411 * 359.97438 * 19 18 17 21 21 N 1.34669 * 109.43564 * 359.72923 * 20 19 18 22 22 H 0.96991 * 126.45239 * 180.26861 * 21 20 19 23 23 H 1.08999 * 109.47094 * 174.23760 * 1 2 3 24 24 H 1.09002 * 109.47437 * 294.23375 * 1 2 3 25 25 H 1.09003 * 109.47701 * 54.23400 * 1 2 3 26 26 H 0.96998 * 119.99796 * 180.02562 * 7 6 4 27 27 H 0.96991 * 119.99874 * 264.99917 * 12 2 1 28 28 H 1.07997 * 119.99885 * 9.34876 * 15 13 12 29 29 H 1.08005 * 119.99646 * 209.49610 * 16 15 13 30 30 H 1.08000 * 126.20977 * 0.03636 * 18 17 16 31 31 H 1.07996 * 125.28032 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.1237 -1.7865 1.2332 6 6 2.3753 0.0135 2.3527 7 7 2.6226 -0.6073 3.4854 8 14 2.4887 1.8759 2.2642 9 1 3.8136 2.2658 1.7184 10 1 1.4160 2.3956 1.3785 11 1 2.3266 2.4469 3.6255 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3571 14 8 1.8578 1.1635 -2.4116 15 6 2.6194 -0.6855 -3.5130 16 6 2.9290 0.0236 -4.6258 17 6 3.3885 1.3600 -4.5099 18 6 3.5834 2.2626 -5.5365 19 7 4.0212 3.3996 -4.9952 20 6 4.1119 3.2659 -3.6970 21 7 3.7258 2.0244 -3.3463 22 1 3.6934 1.6635 -2.4466 23 1 -0.3633 -1.0225 -0.1032 24 1 -0.3634 0.4218 0.9371 25 1 -0.3634 0.6006 -0.8338 26 1 2.8636 -0.0980 4.2750 27 1 2.2490 -1.6316 -1.1526 28 1 2.7329 -1.7594 -3.5080 29 1 2.8257 -0.4293 -5.6009 30 1 3.4121 2.0806 -6.5871 31 1 4.4404 4.0338 -3.0123 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493111593.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:07 Heat of formation + Delta-G solvation = 31.505052 kcal Electronic energy + Delta-G solvation = -16352.516287 eV Core-core repulsion = 13635.169715 eV Total energy + Delta-G solvation = -2717.346572 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.95357 -40.72334 -36.93860 -34.86985 -34.43243 -33.15442 -31.79400 -29.53884 -27.38826 -25.28414 -22.98069 -22.05991 -21.67720 -20.87308 -19.65819 -18.56170 -17.55982 -17.06619 -16.01624 -15.85461 -15.65682 -15.53250 -15.08378 -14.59119 -14.40160 -14.32185 -13.88022 -13.71658 -13.31842 -12.99189 -12.87707 -12.49650 -11.92138 -11.37034 -11.29767 -11.12183 -10.89865 -10.80404 -10.52678 -9.82947 -8.69417 -8.42826 -6.48270 -0.41292 1.25549 1.31000 1.40223 1.58877 2.12202 2.23368 2.35608 2.52052 2.67069 3.03972 3.78337 4.08376 4.15361 4.28772 4.43893 4.52199 4.69272 4.71731 4.80585 4.91208 5.07092 5.22845 5.34567 5.40399 5.58740 5.71737 5.77805 6.10698 6.42843 6.57009 6.91377 7.03992 7.17394 7.44208 8.72262 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.031376 B = 0.007519 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.174285 B = 3722.758178 C = 4256.612795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.235 3.765 3 H 0.035 0.965 4 C -0.529 4.529 5 H 0.054 0.946 6 C 0.033 3.967 7 N -0.928 5.928 8 Si 0.929 3.071 9 H -0.266 1.266 10 H -0.261 1.261 11 H -0.281 1.281 12 N -0.699 5.699 13 C 0.525 3.475 14 O -0.605 6.605 15 C -0.276 4.276 16 C 0.049 3.951 17 C -0.044 4.044 18 C 0.019 3.981 19 N -0.533 5.533 20 C 0.187 3.813 21 N -0.529 5.529 22 H 0.421 0.579 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.033 0.967 26 H 0.271 0.729 27 H 0.405 0.595 28 H 0.166 0.834 29 H 0.195 0.805 30 H 0.207 0.793 31 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 1.042 -15.584 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.131 3.869 3 H 0.053 0.947 4 C -0.568 4.568 5 H 0.072 0.928 6 C -0.168 4.168 7 N -0.566 5.566 8 Si 0.754 3.246 9 H -0.191 1.191 10 H -0.185 1.185 11 H -0.207 1.207 12 N -0.346 5.346 13 C 0.318 3.682 14 O -0.492 6.492 15 C -0.298 4.298 16 C 0.028 3.972 17 C -0.159 4.159 18 C -0.135 4.135 19 N -0.253 5.253 20 C -0.096 4.096 21 N -0.133 5.133 22 H 0.265 0.735 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.241 0.759 28 H 0.184 0.816 29 H 0.212 0.788 30 H 0.224 0.776 31 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.168 2.565 -15.738 16.093 hybrid contribution -0.169 -0.570 1.721 1.821 sum 1.999 1.995 -14.017 14.299 Atomic orbital electron populations 1.22110 0.97580 1.00751 0.99529 1.18867 0.91716 0.93253 0.83077 0.94741 1.21170 1.44556 0.94627 0.96406 0.92764 1.25642 0.93912 1.02519 0.94741 1.70002 1.47353 1.38075 1.01145 0.86020 0.79732 0.81263 0.77635 1.19109 1.18502 1.20655 1.46479 1.64310 1.14617 1.09190 1.17942 0.79084 0.86742 0.84431 1.90761 1.55175 1.17293 1.85948 1.22163 1.11194 1.02819 0.93632 1.21191 0.87210 0.88559 1.00263 1.19753 1.12426 0.97349 0.86378 1.23597 1.01520 0.88193 1.00182 1.70059 1.21368 1.26955 1.06895 1.25546 1.02138 0.87911 0.93966 1.44147 1.46086 1.12458 1.10580 0.73510 0.92616 0.93504 0.94747 0.92000 0.75945 0.81639 0.78777 0.77582 0.75718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.98 9.47 71.98 0.68 -5.29 16 2 C 0.23 10.61 2.34 44.24 0.10 10.71 16 3 H 0.03 1.68 4.54 -2.38 -0.01 1.66 16 4 C -0.53 -27.74 9.02 25.60 0.23 -27.51 16 5 H 0.05 3.05 8.06 -2.91 -0.02 3.02 16 6 C 0.03 1.78 5.47 84.66 0.46 2.25 16 7 N -0.93 -54.15 13.96 21.45 0.30 -53.85 16 8 Si 0.93 42.97 27.08 68.60 1.86 44.83 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.26 -11.92 6.71 99.48 0.67 -11.26 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 N -0.70 -25.85 5.06 -455.11 -2.30 -28.15 16 13 C 0.52 17.99 6.36 85.07 0.54 18.53 16 14 O -0.60 -24.52 12.17 -4.58 -0.06 -24.58 16 15 C -0.28 -6.68 9.75 22.47 0.22 -6.47 16 16 C 0.05 1.01 9.82 22.52 0.22 1.23 16 17 C -0.04 -1.18 5.97 38.98 0.23 -0.95 16 18 C 0.02 0.49 11.91 84.43 1.01 1.50 16 19 N -0.53 -15.83 11.19 -198.37 -2.22 -18.05 16 20 C 0.19 5.32 12.99 180.29 2.34 7.67 16 21 N -0.53 -16.17 4.53 -191.12 -0.86 -17.04 16 22 H 0.42 14.07 6.16 -92.72 -0.57 13.49 16 23 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 25 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 27 H 0.41 13.23 8.55 -92.72 -0.79 12.43 16 28 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 29 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 30 H 0.21 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.23 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -68.66 270.29 2.51 -66.15 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.24 Total: 29.04 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 6.04 Total: 1.66 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -5.09 Total: -117.09 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.06 Total: -24.58 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.86 Total: 44.83 kcal Total: -68.66 2.51 -66.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493111593.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.652 kcal (2) G-P(sol) polarization free energy of solvation -68.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds