Wall clock time and date at job start Sun Mar 29 2020 22:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46947 * 2 1 4 4 C 1.50704 * 109.46807 * 240.00645 * 2 1 3 5 5 H 1.07997 * 119.99503 * 239.99365 * 4 2 1 6 6 C 1.37876 * 120.00054 * 60.00002 * 4 2 1 7 7 N 1.31511 * 120.00122 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99969 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46852 * 89.99541 * 8 6 4 10 10 H 1.48494 * 109.47171 * 209.99818 * 8 6 4 11 11 H 1.48501 * 109.46847 * 330.00084 * 8 6 4 12 12 N 1.46495 * 109.47282 * 120.00440 * 2 1 3 13 13 C 1.34772 * 119.99796 * 274.99865 * 12 2 1 14 14 O 1.21766 * 120.00284 * 0.02562 * 13 12 2 15 15 C 1.41591 * 119.99966 * 180.02562 * 13 12 2 16 16 C 1.35530 * 120.00010 * 186.60933 * 15 13 12 17 17 C 1.41791 * 120.00305 * 7.90107 * 16 15 13 18 18 C 1.38058 * 126.95379 * 217.89111 * 17 16 15 19 19 N 1.33326 * 107.58235 * 180.02562 * 18 17 16 20 20 C 1.30827 * 109.78718 * 0.02562 * 19 18 17 21 21 N 1.34669 * 109.43029 * 359.72422 * 20 19 18 22 22 H 0.97004 * 126.45153 * 180.31419 * 21 20 19 23 23 H 1.09005 * 109.47335 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47334 * 59.99289 * 1 2 3 25 25 H 1.09002 * 109.46985 * 299.99533 * 1 2 3 26 26 H 0.97000 * 120.00081 * 180.02562 * 7 6 4 27 27 H 0.96998 * 120.00029 * 95.00068 * 12 2 1 28 28 H 1.08004 * 119.99355 * 6.60889 * 15 13 12 29 29 H 1.08008 * 119.99723 * 187.90897 * 16 15 13 30 30 H 1.08001 * 126.20721 * 0.02746 * 18 17 16 31 31 H 1.08000 * 125.28365 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6532 -1.5883 -1.1315 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8299 -2.6033 8 14 2.3223 -1.1192 -4.0081 9 1 1.3446 -2.1612 -4.4125 10 1 2.4870 -0.1398 -5.1121 11 1 3.6307 -1.7562 -3.7122 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8570 1.1630 2.4119 15 6 2.6196 -0.6858 3.5129 16 6 2.6228 -0.0490 4.7093 17 6 2.0017 1.2190 4.8393 18 6 2.4447 2.2867 5.5941 19 7 1.5701 3.2808 5.4379 20 6 0.6090 2.9030 4.6347 21 7 0.8328 1.6374 4.2325 22 1 0.2773 1.1169 3.6313 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 0.5138 0.8900 26 1 0.7080 1.1612 -3.4843 27 1 2.2490 -1.6318 1.1524 28 1 2.9774 -1.7023 3.4411 29 1 3.0987 -0.5074 5.5637 30 1 3.3377 2.3121 6.2010 31 1 -0.2311 3.5128 4.3369 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493111595.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:10 Heat of formation + Delta-G solvation = 54.101761 kcal Electronic energy + Delta-G solvation = -16276.925795 eV Core-core repulsion = 13560.559090 eV Total energy + Delta-G solvation = -2716.366705 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.63823 -39.12004 -35.16948 -33.55237 -32.54993 -31.81037 -29.50547 -28.03299 -25.35598 -23.89735 -21.56645 -20.81444 -20.24207 -19.26439 -18.11536 -16.45694 -16.06155 -15.20742 -14.66693 -14.41131 -14.20821 -13.97255 -13.47706 -13.15854 -12.95994 -12.54242 -12.28261 -11.79228 -11.17449 -11.03752 -10.85699 -10.44559 -10.31825 -10.16200 -9.80167 -9.40728 -9.14380 -8.95777 -8.60121 -8.05020 -7.57671 -6.19278 -4.28820 0.95288 2.78659 3.19797 3.27092 3.29253 3.44263 3.65980 3.89872 4.16435 4.39357 4.94726 5.13373 5.16541 5.29323 5.57396 5.68948 5.72095 6.14310 6.30702 6.64630 6.71446 6.80506 6.99922 7.03208 7.34425 7.47893 7.61853 7.76431 7.82700 8.06073 8.35343 8.57238 8.70240 9.02478 9.39140 10.86750 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.047231 B = 0.005829 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.692424 B = 4802.403044 C = 5132.128360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.262 3.738 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.699 5.699 13 C 0.521 3.479 14 O -0.562 6.562 15 C -0.221 4.221 16 C 0.001 3.999 17 C -0.007 4.007 18 C 0.004 3.996 19 N -0.510 5.510 20 C 0.193 3.807 21 N -0.505 5.505 22 H 0.423 0.577 23 H 0.026 0.974 24 H 0.091 0.909 25 H 0.010 0.990 26 H 0.265 0.735 27 H 0.389 0.611 28 H 0.129 0.871 29 H 0.142 0.858 30 H 0.168 0.832 31 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 -3.894 12.067 12.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.160 3.840 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.345 5.345 13 C 0.310 3.690 14 O -0.445 6.445 15 C -0.243 4.243 16 C -0.020 4.020 17 C -0.124 4.124 18 C -0.149 4.149 19 N -0.229 5.229 20 C -0.091 4.091 21 N -0.106 5.106 22 H 0.265 0.735 23 H 0.046 0.954 24 H 0.109 0.891 25 H 0.029 0.971 26 H 0.075 0.925 27 H 0.222 0.778 28 H 0.147 0.853 29 H 0.159 0.841 30 H 0.186 0.814 31 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.053 -2.158 12.231 12.420 hybrid contribution 0.198 -2.013 -1.806 2.711 sum 0.144 -4.171 10.425 11.230 Atomic orbital electron populations 1.22064 0.98464 0.99054 1.00677 1.18747 0.90905 0.94099 0.80207 0.93309 1.21212 1.32569 1.13266 0.90356 0.92094 1.24892 0.94768 0.94908 0.99129 1.69889 1.35846 1.22402 1.23982 0.86431 0.79195 0.79271 0.82125 1.20506 1.21005 1.19828 1.46599 1.63581 1.13406 1.10891 1.17273 0.79639 0.87501 0.84614 1.90828 1.52433 1.15696 1.85556 1.22365 1.06923 1.01368 0.93642 1.20589 0.93743 0.90653 0.97046 1.18888 0.93083 0.97546 1.02906 1.22757 1.00244 0.89341 1.02563 1.69955 1.03890 1.30075 1.18975 1.24777 1.01078 0.84742 0.98455 1.43560 1.19734 1.13370 1.33893 0.73502 0.95441 0.89056 0.97126 0.92517 0.77831 0.85336 0.84072 0.81441 0.78298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.26 37.16 0.34 -3.07 16 2 C 0.26 6.47 2.56 -69.08 -0.18 6.30 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.54 -13.99 8.73 -34.44 -0.30 -14.29 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.61 11.32 55.43 0.63 -23.99 16 8 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.70 -13.91 5.06 -57.84 -0.29 -14.21 16 13 C 0.52 9.77 7.04 -14.98 -0.11 9.66 16 14 O -0.56 -12.22 11.23 5.13 0.06 -12.16 16 15 C -0.22 -3.07 9.85 -39.27 -0.39 -3.46 16 16 C 0.00 0.01 9.98 -39.19 -0.39 -0.38 16 17 C -0.01 -0.11 5.43 -83.71 -0.45 -0.57 16 18 C 0.00 0.07 11.91 -16.97 -0.20 -0.13 16 19 N -0.51 -8.61 11.19 -14.05 -0.16 -8.77 16 20 C 0.19 2.97 12.99 -90.44 -1.17 1.80 16 21 N -0.50 -7.97 4.00 -11.76 -0.05 -8.02 16 22 H 0.42 6.66 7.33 -40.82 -0.30 6.36 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.39 6.73 8.50 -40.82 -0.35 6.38 16 28 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 30 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 31 H 0.20 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 270.76 15.07 4.08 4.08 Total: -1.00 -31.67 270.76 -7.13 -38.80 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -3.43 Total: 11.32 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -2.94 Total: -2.47 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.13 Total: -54.98 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.06 Total: -12.16 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.67 -7.13 -38.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493111595.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.900 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds