Wall clock time and date at job start Sun Mar 29 2020 22:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47134 * 2 1 4 4 C 1.50707 * 109.47222 * 119.99834 * 2 1 3 5 5 H 1.07995 * 119.99859 * 120.00313 * 4 2 1 6 6 C 1.37883 * 119.99664 * 300.00371 * 4 2 1 7 7 N 1.31510 * 120.00298 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99436 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46551 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47224 * 299.99711 * 8 6 4 11 11 H 1.48495 * 109.47353 * 59.99936 * 8 6 4 12 12 N 1.46492 * 109.47429 * 239.99951 * 2 1 3 13 13 C 1.34774 * 120.00267 * 84.99906 * 12 2 1 14 14 O 1.21723 * 120.00074 * 0.02562 * 13 12 2 15 15 C 1.46322 * 120.00480 * 179.97438 * 13 12 2 16 16 C 1.35175 * 120.00220 * 186.66075 * 15 13 12 17 17 C 1.46524 * 119.99820 * 7.26050 * 16 15 13 18 18 N 1.31885 * 125.88024 * 49.08259 * 17 16 15 19 19 C 1.33171 * 109.22280 * 179.97438 * 18 17 16 20 20 C 1.35519 * 108.44260 * 359.97438 * 19 18 17 21 21 N 1.36247 * 107.10172 * 359.77559 * 20 19 18 22 22 H 0.97002 * 126.50666 * 180.24218 * 21 20 19 23 23 H 1.09000 * 109.46749 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47496 * 299.99960 * 1 2 3 25 25 H 1.09003 * 109.46774 * 59.99958 * 1 2 3 26 26 H 0.96993 * 120.00057 * 180.02562 * 7 6 4 27 27 H 0.97000 * 120.00392 * 264.99782 * 12 2 1 28 28 H 1.07999 * 119.99878 * 6.66453 * 15 13 12 29 29 H 1.08003 * 120.00104 * 187.25486 * 16 15 13 30 30 H 1.07995 * 125.77992 * 179.97438 * 19 18 17 31 31 H 1.07999 * 126.44703 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 1.8268 -0.4198 5.2204 10 1 1.8258 -2.5202 4.0078 11 1 3.8063 -1.1208 4.0083 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3570 14 8 1.8580 1.1628 -2.4117 15 6 2.6354 -0.7079 -3.5516 16 6 2.8927 -0.0074 -4.6787 17 6 2.8365 1.4566 -4.6603 18 7 3.4204 2.2415 -3.7758 19 6 3.1527 3.5119 -4.0725 20 6 2.3741 3.5382 -5.1814 21 7 2.1745 2.2451 -5.5616 22 1 1.6591 1.9411 -6.3251 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7094 1.1618 3.4844 27 1 2.2491 -1.6317 -1.1526 28 1 2.7903 -1.7765 -3.5328 29 1 3.1398 -0.5269 -5.5928 30 1 3.4976 4.3749 -3.5226 31 1 1.9875 4.4186 -5.6732 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493471322.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:20 Heat of formation + Delta-G solvation = 51.624729 kcal Electronic energy + Delta-G solvation = -16135.703198 eV Core-core repulsion = 13419.229081 eV Total energy + Delta-G solvation = -2716.474117 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.47027 -38.61423 -34.80916 -33.08182 -32.26611 -32.10651 -29.18472 -27.98058 -25.17879 -23.73832 -21.43807 -21.00378 -19.80249 -19.07110 -18.06427 -16.35268 -15.86492 -15.04842 -14.62053 -14.18085 -14.09577 -13.64823 -13.41474 -13.12848 -12.86030 -12.33506 -12.05526 -11.58885 -11.01308 -10.89130 -10.67245 -10.25687 -10.15610 -9.84683 -9.65293 -9.33304 -8.95214 -8.87421 -8.45582 -7.70427 -7.68069 -6.03862 -4.12547 1.28501 2.48658 3.31206 3.35970 3.37501 3.38158 3.74948 4.16183 4.28537 4.49411 4.75921 5.20095 5.28194 5.36252 5.60290 5.75310 5.86697 6.15051 6.42729 6.44510 6.91984 7.04857 7.12595 7.25246 7.60084 7.63544 7.69214 7.80785 8.03304 8.24724 8.53075 8.81975 8.90461 9.32849 9.55619 11.02253 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.042183 B = 0.005797 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.608591 B = 4828.896367 C = 5060.734776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.266 3.734 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.901 3.099 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.276 1.276 12 N -0.706 5.706 13 C 0.518 3.482 14 O -0.524 6.524 15 C -0.144 4.144 16 C -0.040 4.040 17 C 0.232 3.768 18 N -0.428 5.428 19 C -0.018 4.018 20 C -0.064 4.064 21 N -0.564 5.564 22 H 0.413 0.587 23 H 0.024 0.976 24 H 0.089 0.911 25 H 0.012 0.988 26 H 0.264 0.736 27 H 0.386 0.614 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.164 0.836 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -1.237 -15.782 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.165 3.835 3 H 0.067 0.933 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.354 5.354 13 C 0.303 3.697 14 O -0.401 6.401 15 C -0.168 4.168 16 C -0.062 4.062 17 C -0.027 4.027 18 N -0.146 5.146 19 C -0.170 4.170 20 C -0.199 4.199 21 N -0.166 5.166 22 H 0.250 0.750 23 H 0.044 0.956 24 H 0.107 0.893 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.218 0.782 28 H 0.153 0.847 29 H 0.155 0.845 30 H 0.181 0.819 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.013 -0.468 -14.929 15.072 hybrid contribution -0.442 -0.747 -0.100 0.874 sum 1.571 -1.215 -15.029 15.159 Atomic orbital electron populations 1.22061 0.98721 0.98870 1.00690 1.18677 0.90729 0.94103 0.80041 0.93307 1.21206 1.32244 1.13118 0.90430 0.92190 1.24889 0.94879 0.94971 0.99018 1.69897 1.36027 1.22485 1.23841 0.86515 0.79199 0.79522 0.81878 1.21190 1.20226 1.20175 1.46433 1.65045 1.13327 1.10557 1.18266 0.80188 0.87292 0.83923 1.90857 1.49926 1.14803 1.84562 1.23530 0.98792 1.00212 0.94291 1.21013 0.99216 0.87645 0.98327 1.21360 0.99398 0.92689 0.89223 1.70439 1.22260 1.01462 1.20418 1.22278 1.02498 0.95257 0.96989 1.22677 1.07865 0.86822 1.02554 1.43317 1.41588 1.06859 1.24853 0.74967 0.95641 0.89294 0.96879 0.92624 0.78183 0.84748 0.84453 0.81910 0.81190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.26 37.16 0.34 -3.41 16 2 C 0.27 7.10 2.56 -69.08 -0.18 6.93 16 3 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 4 C -0.53 -14.61 8.73 -34.43 -0.30 -14.91 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -25.76 11.32 55.43 0.63 -25.14 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.71 -15.47 5.06 -56.36 -0.29 -15.75 16 13 C 0.52 10.95 7.54 -13.01 -0.10 10.86 16 14 O -0.52 -13.11 12.46 5.17 0.06 -13.05 16 15 C -0.14 -2.18 10.07 -37.42 -0.38 -2.55 16 16 C -0.04 -0.55 10.26 -37.33 -0.38 -0.93 16 17 C 0.23 3.86 6.11 -154.53 -0.94 2.91 16 18 N -0.43 -8.59 8.96 -11.42 -0.10 -8.69 16 19 C -0.02 -0.31 11.84 -17.94 -0.21 -0.52 16 20 C -0.06 -0.86 12.03 -16.56 -0.20 -1.06 16 21 N -0.56 -7.34 6.21 -10.76 -0.07 -7.41 16 22 H 0.41 3.67 8.96 -40.82 -0.37 3.30 16 23 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 25 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.39 7.24 8.52 -40.82 -0.35 6.89 16 28 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.16 2.45 8.06 -52.49 -0.42 2.03 16 31 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 274.28 15.07 4.13 4.13 Total: -1.00 -35.72 274.28 -6.59 -42.31 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -3.50 Total: 8.39 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.44 Total: -0.98 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.17 Total: -56.99 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.06 Total: -13.05 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -35.72 -6.59 -42.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493471322.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.937 kcal (2) G-P(sol) polarization free energy of solvation -35.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds