Wall clock time and date at job start Sun Mar 29 2020 22:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47134 * 2 1 4 4 C 1.50707 * 109.47222 * 119.99834 * 2 1 3 5 5 H 1.07995 * 119.99859 * 120.00313 * 4 2 1 6 6 C 1.37883 * 119.99664 * 300.00371 * 4 2 1 7 7 N 1.31510 * 120.00298 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99436 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46551 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47224 * 299.99711 * 8 6 4 11 11 H 1.48495 * 109.47353 * 59.99936 * 8 6 4 12 12 N 1.46492 * 109.47429 * 239.99951 * 2 1 3 13 13 C 1.34774 * 120.00267 * 84.99906 * 12 2 1 14 14 O 1.21723 * 120.00074 * 0.02562 * 13 12 2 15 15 C 1.46322 * 120.00480 * 179.97438 * 13 12 2 16 16 C 1.35175 * 120.00220 * 186.66075 * 15 13 12 17 17 C 1.46524 * 119.99820 * 7.26050 * 16 15 13 18 18 N 1.31885 * 125.88024 * 49.08259 * 17 16 15 19 19 C 1.33171 * 109.22280 * 179.97438 * 18 17 16 20 20 C 1.35519 * 108.44260 * 359.97438 * 19 18 17 21 21 N 1.36247 * 107.10172 * 359.77559 * 20 19 18 22 22 H 0.97002 * 126.50666 * 180.24218 * 21 20 19 23 23 H 1.09000 * 109.46749 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47496 * 299.99960 * 1 2 3 25 25 H 1.09003 * 109.46774 * 59.99958 * 1 2 3 26 26 H 0.96993 * 120.00057 * 180.02562 * 7 6 4 27 27 H 0.97000 * 120.00392 * 264.99782 * 12 2 1 28 28 H 1.07999 * 119.99878 * 6.66453 * 15 13 12 29 29 H 1.08003 * 120.00104 * 187.25486 * 16 15 13 30 30 H 1.07995 * 125.77992 * 179.97438 * 19 18 17 31 31 H 1.07999 * 126.44703 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 1.8268 -0.4198 5.2204 10 1 1.8258 -2.5202 4.0078 11 1 3.8063 -1.1208 4.0083 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3570 14 8 1.8580 1.1628 -2.4117 15 6 2.6354 -0.7079 -3.5516 16 6 2.8927 -0.0074 -4.6787 17 6 2.8365 1.4566 -4.6603 18 7 3.4204 2.2415 -3.7758 19 6 3.1527 3.5119 -4.0725 20 6 2.3741 3.5382 -5.1814 21 7 2.1745 2.2451 -5.5616 22 1 1.6591 1.9411 -6.3251 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7094 1.1618 3.4844 27 1 2.2491 -1.6317 -1.1526 28 1 2.7903 -1.7765 -3.5328 29 1 3.1398 -0.5269 -5.5928 30 1 3.4976 4.3749 -3.5226 31 1 1.9875 4.4186 -5.6732 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493471322.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:20 Heat of formation + Delta-G solvation = 24.308188 kcal Electronic energy + Delta-G solvation = -16136.887733 eV Core-core repulsion = 13419.229081 eV Total energy + Delta-G solvation = -2717.658651 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.63388 -40.28365 -36.72158 -34.34868 -34.23721 -33.33227 -31.03574 -29.31934 -27.33753 -25.16379 -22.88685 -22.36557 -21.47127 -20.49126 -19.47226 -18.11986 -17.36359 -16.95799 -15.93547 -15.91040 -15.51926 -15.08407 -14.77661 -14.47330 -14.29606 -14.17304 -13.66899 -13.28269 -12.94026 -12.85095 -12.71620 -12.25741 -12.13661 -11.13675 -11.03514 -10.90288 -10.63001 -10.53676 -10.44058 -9.57041 -8.89276 -8.16038 -6.33886 0.12697 1.35179 1.44419 1.47822 1.55356 2.33245 2.38335 2.47783 2.71905 2.83218 3.14259 3.73574 4.11838 4.32231 4.49678 4.62604 4.74385 4.76069 4.91277 5.02317 5.11034 5.27475 5.34511 5.49984 5.66629 5.73853 5.94314 5.99426 6.13235 6.67095 6.75243 7.12888 7.34854 7.35648 7.74879 8.90405 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.042183 B = 0.005797 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.608591 B = 4828.896367 C = 5060.734776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.275 3.725 3 H -0.011 1.011 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.975 3.025 9 H -0.286 1.286 10 H -0.261 1.261 11 H -0.272 1.272 12 N -0.706 5.706 13 C 0.507 3.493 14 O -0.571 6.571 15 C -0.164 4.164 16 C -0.013 4.013 17 C 0.205 3.795 18 N -0.488 5.488 19 C -0.071 4.071 20 C -0.034 4.034 21 N -0.547 5.547 22 H 0.435 0.565 23 H 0.041 0.959 24 H 0.064 0.936 25 H 0.007 0.993 26 H 0.265 0.735 27 H 0.403 0.597 28 H 0.183 0.817 29 H 0.198 0.802 30 H 0.163 0.837 31 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.088 -3.242 -17.574 17.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.171 3.829 3 H 0.007 0.993 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.189 4.189 7 N -0.559 5.559 8 Si 0.800 3.200 9 H -0.211 1.211 10 H -0.185 1.185 11 H -0.197 1.197 12 N -0.355 5.355 13 C 0.296 3.704 14 O -0.452 6.452 15 C -0.187 4.187 16 C -0.034 4.034 17 C -0.055 4.055 18 N -0.207 5.207 19 C -0.222 4.222 20 C -0.171 4.171 21 N -0.152 5.152 22 H 0.277 0.723 23 H 0.060 0.940 24 H 0.082 0.918 25 H 0.026 0.974 26 H 0.074 0.926 27 H 0.238 0.762 28 H 0.200 0.800 29 H 0.215 0.785 30 H 0.180 0.820 31 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 2.282 -2.522 -16.773 17.115 hybrid contribution -0.529 0.026 0.354 0.637 sum 1.753 -2.496 -16.419 16.700 Atomic orbital electron populations 1.21852 0.98470 0.99278 0.99128 1.18206 0.90872 0.91562 0.82266 0.99340 1.21554 1.32495 1.13530 0.90927 0.90874 1.25865 0.94880 0.95609 1.02501 1.70065 1.37194 1.24061 1.24595 0.85352 0.78570 0.78770 0.77353 1.21129 1.18541 1.19691 1.46188 1.65532 1.14049 1.09751 1.19317 0.79007 0.86992 0.85124 1.90837 1.51752 1.17103 1.85483 1.23499 1.01265 1.02249 0.91697 1.21756 0.95614 0.86172 0.99845 1.21921 0.99929 0.94203 0.89461 1.70307 1.24647 1.03150 1.22598 1.22593 1.05277 0.94904 0.99407 1.23255 1.04967 0.88196 1.00679 1.43264 1.40804 1.06313 1.24793 0.72349 0.93988 0.91770 0.97423 0.92618 0.76180 0.80005 0.78474 0.81990 0.76767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 2 C 0.27 15.19 2.56 44.25 0.11 15.30 16 3 H -0.01 -0.75 7.58 -2.38 -0.02 -0.77 16 4 C -0.55 -30.40 8.73 25.60 0.22 -30.18 16 5 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 6 C 0.01 0.62 5.30 84.66 0.45 1.07 16 7 N -0.92 -55.21 11.32 21.45 0.24 -54.97 16 8 Si 0.98 43.46 29.54 68.60 2.03 45.49 16 9 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 10 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 N -0.71 -31.20 5.06 -450.42 -2.28 -33.48 16 13 C 0.51 21.58 7.54 86.35 0.65 22.23 16 14 O -0.57 -29.69 12.46 -4.42 -0.06 -29.75 16 15 C -0.16 -4.53 10.07 23.67 0.24 -4.29 16 16 C -0.01 -0.31 10.26 23.73 0.24 -0.06 16 17 C 0.20 6.52 6.11 135.89 0.83 7.35 16 18 N -0.49 -20.05 8.96 -190.04 -1.70 -21.75 16 19 C -0.07 -2.49 11.84 83.86 0.99 -1.50 16 20 C -0.03 -0.87 12.03 83.38 1.00 0.13 16 21 N -0.55 -12.96 6.21 -187.94 -1.17 -14.13 16 22 H 0.44 6.18 8.96 -92.71 -0.83 5.35 16 23 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.06 3.74 6.07 -2.39 -0.01 3.73 16 25 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.40 14.73 8.52 -92.71 -0.79 13.95 16 28 H 0.18 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.20 2.23 8.06 -2.91 -0.02 2.20 16 30 H 0.16 5.26 8.06 -2.91 -0.02 5.24 16 31 H 0.22 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -83.57 274.28 2.02 -81.56 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -0.46 Total: 23.18 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 5.41 Total: 3.85 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -4.91 Total: -124.33 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.06 Total: -29.75 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -83.57 2.02 -81.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493471322.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.865 kcal (2) G-P(sol) polarization free energy of solvation -83.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds