Wall clock time and date at job start Sun Mar 29 2020 22:10:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09007 * 109.47134 * 2 1
4 4 C 1.50707 * 109.47222 * 119.99834 * 2 1 3
5 5 H 1.07995 * 119.99859 * 120.00313 * 4 2 1
6 6 C 1.37883 * 119.99664 * 300.00371 * 4 2 1
7 7 N 1.31510 * 120.00298 * 359.97438 * 6 4 2
8 8 Si 1.86801 * 119.99436 * 179.97438 * 6 4 2
9 9 H 1.48500 * 109.46551 * 179.97438 * 8 6 4
10 10 H 1.48503 * 109.47224 * 299.99711 * 8 6 4
11 11 H 1.48495 * 109.47353 * 59.99936 * 8 6 4
12 12 N 1.46492 * 109.47429 * 239.99951 * 2 1 3
13 13 C 1.34774 * 120.00267 * 84.99906 * 12 2 1
14 14 O 1.21723 * 120.00074 * 0.02562 * 13 12 2
15 15 C 1.46322 * 120.00480 * 179.97438 * 13 12 2
16 16 C 1.35175 * 120.00220 * 186.66075 * 15 13 12
17 17 C 1.46524 * 119.99820 * 7.26050 * 16 15 13
18 18 N 1.31885 * 125.88024 * 49.08259 * 17 16 15
19 19 C 1.33171 * 109.22280 * 179.97438 * 18 17 16
20 20 C 1.35519 * 108.44260 * 359.97438 * 19 18 17
21 21 N 1.36247 * 107.10172 * 359.77559 * 20 19 18
22 22 H 0.97002 * 126.50666 * 180.24218 * 21 20 19
23 23 H 1.09000 * 109.46749 * 180.02562 * 1 2 3
24 24 H 1.09001 * 109.47496 * 299.99960 * 1 2 3
25 25 H 1.09003 * 109.46774 * 59.99958 * 1 2 3
26 26 H 0.96993 * 120.00057 * 180.02562 * 7 6 4
27 27 H 0.97000 * 120.00392 * 264.99782 * 12 2 1
28 28 H 1.07999 * 119.99878 * 6.66453 * 15 13 12
29 29 H 1.08003 * 120.00104 * 187.25486 * 16 15 13
30 30 H 1.07995 * 125.77992 * 179.97438 * 19 18 17
31 31 H 1.07999 * 126.44703 * 179.97438 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 1.2305
5 1 2.6533 -1.5884 1.1314
6 6 1.6992 -0.2393 2.4828
7 7 0.9434 0.8302 2.6034
8 14 2.3213 -1.1203 4.0080
9 1 1.8268 -0.4198 5.2204
10 1 1.8258 -2.5202 4.0078
11 1 3.8063 -1.1208 4.0083
12 7 2.0183 -0.6906 -1.1961
13 6 2.1471 -0.0183 -2.3570
14 8 1.8580 1.1628 -2.4117
15 6 2.6354 -0.7079 -3.5516
16 6 2.8927 -0.0074 -4.6787
17 6 2.8365 1.4566 -4.6603
18 7 3.4204 2.2415 -3.7758
19 6 3.1527 3.5119 -4.0725
20 6 2.3741 3.5382 -5.1814
21 7 2.1745 2.2451 -5.5616
22 1 1.6591 1.9411 -6.3251
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3634 0.5138 0.8900
25 1 -0.3633 0.5139 -0.8900
26 1 0.7094 1.1618 3.4844
27 1 2.2491 -1.6317 -1.1526
28 1 2.7903 -1.7765 -3.5328
29 1 3.1398 -0.5269 -5.5928
30 1 3.4976 4.3749 -3.5226
31 1 1.9875 4.4186 -5.6732
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000493471322.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:10:20
Heat of formation + Delta-G solvation = 24.308188 kcal
Electronic energy + Delta-G solvation = -16136.887733 eV
Core-core repulsion = 13419.229081 eV
Total energy + Delta-G solvation = -2717.658651 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 235.106 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-42.63388 -40.28365 -36.72158 -34.34868 -34.23721 -33.33227 -31.03574 -29.31934
-27.33753 -25.16379 -22.88685 -22.36557 -21.47127 -20.49126 -19.47226 -18.11986
-17.36359 -16.95799 -15.93547 -15.91040 -15.51926 -15.08407 -14.77661 -14.47330
-14.29606 -14.17304 -13.66899 -13.28269 -12.94026 -12.85095 -12.71620 -12.25741
-12.13661 -11.13675 -11.03514 -10.90288 -10.63001 -10.53676 -10.44058 -9.57041
-8.89276 -8.16038 -6.33886 0.12697 1.35179 1.44419 1.47822 1.55356
2.33245 2.38335 2.47783 2.71905 2.83218 3.14259 3.73574 4.11838
4.32231 4.49678 4.62604 4.74385 4.76069 4.91277 5.02317 5.11034
5.27475 5.34511 5.49984 5.66629 5.73853 5.94314 5.99426 6.13235
6.67095 6.75243 7.12888 7.34854 7.35648 7.74879 8.90405
Molecular weight = 235.11amu
Principal moments of inertia in cm(-1)
A = 0.042183 B = 0.005797 C = 0.005531
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 663.608591 B = 4828.896367 C = 5060.734776
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C 0.275 3.725
3 H -0.011 1.011
4 C -0.547 4.547
5 H 0.073 0.927
6 C 0.011 3.989
7 N -0.921 5.921
8 Si 0.975 3.025
9 H -0.286 1.286
10 H -0.261 1.261
11 H -0.272 1.272
12 N -0.706 5.706
13 C 0.507 3.493
14 O -0.571 6.571
15 C -0.164 4.164
16 C -0.013 4.013
17 C 0.205 3.795
18 N -0.488 5.488
19 C -0.071 4.071
20 C -0.034 4.034
21 N -0.547 5.547
22 H 0.435 0.565
23 H 0.041 0.959
24 H 0.064 0.936
25 H 0.007 0.993
26 H 0.265 0.735
27 H 0.403 0.597
28 H 0.183 0.817
29 H 0.198 0.802
30 H 0.163 0.837
31 H 0.216 0.784
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.088 -3.242 -17.574 17.992
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.171 3.829
3 H 0.007 0.993
4 C -0.585 4.585
5 H 0.091 0.909
6 C -0.189 4.189
7 N -0.559 5.559
8 Si 0.800 3.200
9 H -0.211 1.211
10 H -0.185 1.185
11 H -0.197 1.197
12 N -0.355 5.355
13 C 0.296 3.704
14 O -0.452 6.452
15 C -0.187 4.187
16 C -0.034 4.034
17 C -0.055 4.055
18 N -0.207 5.207
19 C -0.222 4.222
20 C -0.171 4.171
21 N -0.152 5.152
22 H 0.277 0.723
23 H 0.060 0.940
24 H 0.082 0.918
25 H 0.026 0.974
26 H 0.074 0.926
27 H 0.238 0.762
28 H 0.200 0.800
29 H 0.215 0.785
30 H 0.180 0.820
31 H 0.232 0.768
Dipole moment (debyes) X Y Z Total
from point charges 2.282 -2.522 -16.773 17.115
hybrid contribution -0.529 0.026 0.354 0.637
sum 1.753 -2.496 -16.419 16.700
Atomic orbital electron populations
1.21852 0.98470 0.99278 0.99128 1.18206 0.90872 0.91562 0.82266
0.99340 1.21554 1.32495 1.13530 0.90927 0.90874 1.25865 0.94880
0.95609 1.02501 1.70065 1.37194 1.24061 1.24595 0.85352 0.78570
0.78770 0.77353 1.21129 1.18541 1.19691 1.46188 1.65532 1.14049
1.09751 1.19317 0.79007 0.86992 0.85124 1.90837 1.51752 1.17103
1.85483 1.23499 1.01265 1.02249 0.91697 1.21756 0.95614 0.86172
0.99845 1.21921 0.99929 0.94203 0.89461 1.70307 1.24647 1.03150
1.22598 1.22593 1.05277 0.94904 0.99407 1.23255 1.04967 0.88196
1.00679 1.43264 1.40804 1.06313 1.24793 0.72349 0.93988 0.91770
0.97423 0.92618 0.76180 0.80005 0.78474 0.81990 0.76767
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16
2 C 0.27 15.19 2.56 44.25 0.11 15.30 16
3 H -0.01 -0.75 7.58 -2.38 -0.02 -0.77 16
4 C -0.55 -30.40 8.73 25.60 0.22 -30.18 16
5 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16
6 C 0.01 0.62 5.30 84.66 0.45 1.07 16
7 N -0.92 -55.21 11.32 21.45 0.24 -54.97 16
8 Si 0.98 43.46 29.54 68.60 2.03 45.49 16
9 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16
10 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16
11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16
12 N -0.71 -31.20 5.06 -450.42 -2.28 -33.48 16
13 C 0.51 21.58 7.54 86.35 0.65 22.23 16
14 O -0.57 -29.69 12.46 -4.42 -0.06 -29.75 16
15 C -0.16 -4.53 10.07 23.67 0.24 -4.29 16
16 C -0.01 -0.31 10.26 23.73 0.24 -0.06 16
17 C 0.20 6.52 6.11 135.89 0.83 7.35 16
18 N -0.49 -20.05 8.96 -190.04 -1.70 -21.75 16
19 C -0.07 -2.49 11.84 83.86 0.99 -1.50 16
20 C -0.03 -0.87 12.03 83.38 1.00 0.13 16
21 N -0.55 -12.96 6.21 -187.94 -1.17 -14.13 16
22 H 0.44 6.18 8.96 -92.71 -0.83 5.35 16
23 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16
24 H 0.06 3.74 6.07 -2.39 -0.01 3.73 16
25 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16
26 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16
27 H 0.40 14.73 8.52 -92.71 -0.79 13.95 16
28 H 0.18 3.17 8.06 -2.91 -0.02 3.15 16
29 H 0.20 2.23 8.06 -2.91 -0.02 2.20 16
30 H 0.16 5.26 8.06 -2.91 -0.02 5.24 16
31 H 0.22 3.26 8.06 -2.91 -0.02 3.24 16
Total: -1.00 -83.57 274.28 2.02 -81.56
By element:
Atomic # 1 Polarization: 23.64 SS G_CDS: -0.46 Total: 23.18 kcal
Atomic # 6 Polarization: -1.57 SS G_CDS: 5.41 Total: 3.85 kcal
Atomic # 7 Polarization: -119.42 SS G_CDS: -4.91 Total: -124.33 kcal
Atomic # 8 Polarization: -29.69 SS G_CDS: -0.06 Total: -29.75 kcal
Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal
Total: -83.57 2.02 -81.56 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000493471322.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.865 kcal
(2) G-P(sol) polarization free energy of solvation -83.575 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.290 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.557 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.308 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds