Wall clock time and date at job start Sun Mar 29 2020 22:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47077 * 2 1 4 4 C 1.50698 * 109.47365 * 239.99583 * 2 1 3 5 5 H 1.08001 * 120.00654 * 240.00448 * 4 2 1 6 6 C 1.37878 * 119.99734 * 59.99899 * 4 2 1 7 7 N 1.31512 * 120.00518 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99992 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.47040 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47190 * 119.99953 * 8 6 4 11 11 H 1.48503 * 109.47303 * 240.00390 * 8 6 4 12 12 N 1.46506 * 109.46726 * 119.99623 * 2 1 3 13 13 C 1.34773 * 119.99968 * 274.99647 * 12 2 1 14 14 O 1.21712 * 120.00234 * 0.02562 * 13 12 2 15 15 C 1.46316 * 119.99678 * 180.02562 * 13 12 2 16 16 C 1.35176 * 119.99834 * 180.02562 * 15 13 12 17 17 C 1.46526 * 120.00115 * 180.02562 * 16 15 13 18 18 N 1.31890 * 125.87403 * 359.41641 * 17 16 15 19 19 C 1.33178 * 109.21416 * 179.83248 * 18 17 16 20 20 C 1.35517 * 108.44603 * 0.43555 * 19 18 17 21 21 N 1.36249 * 107.10072 * 359.73622 * 20 19 18 22 22 H 0.97000 * 126.50228 * 180.02562 * 21 20 19 23 23 H 1.09001 * 109.47500 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47359 * 300.00329 * 1 2 3 25 25 H 1.09002 * 109.46979 * 60.00370 * 1 2 3 26 26 H 0.97001 * 120.00519 * 179.97438 * 7 6 4 27 27 H 0.96998 * 119.99507 * 95.00502 * 12 2 1 28 28 H 1.08004 * 120.00360 * 0.02562 * 15 13 12 29 29 H 1.08005 * 119.99947 * 359.72711 * 16 15 13 30 30 H 1.08002 * 125.77751 * 180.14689 * 19 18 17 31 31 H 1.07995 * 126.45063 * 179.75909 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3214 -1.1205 -4.0079 9 1 3.1456 -2.2879 -3.6036 10 1 1.1661 -1.5869 -4.8160 11 1 3.1467 -0.1876 -4.8165 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8572 1.1627 2.4119 15 6 2.6351 -0.7077 3.5517 16 6 2.7638 -0.0335 4.7162 17 6 3.2532 -0.7239 5.9124 18 7 3.5897 -1.9969 5.9867 19 6 3.9913 -2.2725 7.2262 20 6 3.8991 -1.1422 7.9681 21 7 3.4340 -0.1602 7.1460 22 1 3.2638 0.7632 7.3891 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7095 1.1616 -3.4845 27 1 2.2490 -1.6317 1.1527 28 1 2.8927 -1.7555 3.5031 29 1 2.5104 1.0154 4.7638 30 1 4.3285 -3.2351 7.5813 31 1 4.1479 -1.0391 9.0139 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493471324.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:28 Heat of formation + Delta-G solvation = 30.944751 kcal Electronic energy + Delta-G solvation = -15411.563215 eV Core-core repulsion = 12694.192346 eV Total energy + Delta-G solvation = -2717.370868 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.02616 -38.84087 -34.90171 -33.41653 -32.70751 -32.33130 -29.42206 -28.28347 -25.24189 -24.06990 -21.80103 -21.31316 -19.98358 -19.13277 -18.00861 -17.06250 -15.77743 -15.26275 -15.14688 -14.49707 -14.21395 -14.03283 -13.87524 -13.49563 -12.97574 -12.39437 -11.90631 -11.68058 -11.06811 -10.95686 -10.73962 -10.41814 -10.28810 -10.23546 -10.21279 -10.04428 -9.15064 -9.01209 -8.53432 -8.15930 -7.82935 -6.10156 -4.19111 0.93552 2.25059 2.84855 3.17634 3.26273 3.34004 3.37340 4.01734 4.10522 4.35347 4.48095 4.87988 5.13936 5.21997 5.22574 5.41454 5.63695 5.86700 6.29241 6.41891 6.57760 6.85900 6.99570 7.11734 7.17406 7.46786 7.59390 7.72661 7.87660 7.94152 8.16936 8.68412 8.80129 9.12808 9.48368 10.95978 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.054286 B = 0.004282 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.660482 B = 6537.064110 C = 6872.117050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.262 3.738 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.697 5.697 13 C 0.527 3.473 14 O -0.560 6.560 15 C -0.134 4.134 16 C -0.043 4.043 17 C 0.229 3.771 18 N -0.469 5.469 19 C -0.026 4.026 20 C -0.051 4.051 21 N -0.559 5.559 22 H 0.423 0.577 23 H 0.027 0.973 24 H 0.015 0.985 25 H 0.090 0.910 26 H 0.264 0.736 27 H 0.392 0.608 28 H 0.137 0.863 29 H 0.143 0.857 30 H 0.172 0.828 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.435 -3.574 17.800 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.160 3.840 3 H 0.068 0.932 4 C -0.571 4.571 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.344 5.344 13 C 0.314 3.686 14 O -0.441 6.441 15 C -0.159 4.159 16 C -0.064 4.064 17 C -0.029 4.029 18 N -0.188 5.188 19 C -0.178 4.178 20 C -0.187 4.187 21 N -0.161 5.161 22 H 0.261 0.739 23 H 0.046 0.954 24 H 0.034 0.966 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.225 0.775 28 H 0.155 0.845 29 H 0.161 0.839 30 H 0.189 0.811 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.110 -3.214 17.009 17.791 hybrid contribution 0.410 0.021 0.091 0.421 sum 4.520 -3.193 17.100 17.973 Atomic orbital electron populations 1.22078 0.98330 0.99218 1.00935 1.18796 0.91135 0.94077 0.79988 0.93210 1.21275 1.32339 1.13234 0.90286 0.91889 1.24893 0.94810 0.94962 0.99086 1.69913 1.36008 1.22506 1.23755 0.86384 0.78597 0.79552 0.82514 1.19672 1.20889 1.20894 1.46476 1.63792 1.13685 1.10405 1.18212 0.79415 0.86989 0.84006 1.90764 1.52007 1.15835 1.85492 1.23312 0.98775 1.01115 0.92738 1.20984 0.98048 0.99147 0.88248 1.21693 1.05363 0.89493 0.86359 1.70403 1.15804 1.11527 1.21115 1.22433 1.06405 0.98997 0.89947 1.22919 1.08126 0.89564 0.98054 1.43403 1.50108 1.12694 1.09882 0.73873 0.95377 0.96601 0.89103 0.92649 0.77516 0.84534 0.83922 0.81069 0.80397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.77 2.56 -69.08 -0.18 6.60 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.53 -14.31 8.73 -34.44 -0.30 -14.61 16 5 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.70 -14.96 5.06 -56.36 -0.29 -15.24 16 13 C 0.53 10.84 7.70 -13.01 -0.10 10.74 16 14 O -0.56 -13.43 15.90 5.18 0.08 -13.35 16 15 C -0.13 -2.17 9.65 -37.43 -0.36 -2.53 16 16 C -0.04 -0.61 9.75 -37.33 -0.36 -0.97 16 17 C 0.23 3.00 7.89 -154.53 -1.22 1.78 16 18 N -0.47 -6.65 10.76 -11.42 -0.12 -6.77 16 19 C -0.03 -0.29 11.84 -17.94 -0.21 -0.50 16 20 C -0.05 -0.43 12.03 -16.56 -0.20 -0.62 16 21 N -0.56 -5.20 6.21 -10.76 -0.07 -5.27 16 22 H 0.42 2.55 8.96 -40.82 -0.37 2.19 16 23 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.39 7.32 8.52 -40.82 -0.35 6.98 16 28 H 0.14 2.03 7.72 -52.48 -0.41 1.62 16 29 H 0.14 1.94 7.52 -52.48 -0.39 1.54 16 30 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 279.63 15.07 4.21 4.21 Total: -1.00 -33.12 279.63 -6.71 -39.83 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -3.45 Total: 7.05 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.68 Total: -1.79 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.15 Total: -51.75 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.12 -6.71 -39.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493471324.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.775 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds