Wall clock time and date at job start Sun Mar 29 2020 22:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47457 * 2 1 4 4 C 1.50701 * 109.47010 * 240.00200 * 2 1 3 5 5 H 1.08002 * 120.00651 * 240.00298 * 4 2 1 6 6 C 1.37884 * 119.99909 * 60.00274 * 4 2 1 7 7 N 1.31509 * 119.99931 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99906 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47237 * 89.99743 * 8 6 4 10 10 H 1.48496 * 109.47047 * 210.00081 * 8 6 4 11 11 H 1.48503 * 109.46869 * 329.99543 * 8 6 4 12 12 N 1.46500 * 109.47226 * 120.00739 * 2 1 3 13 13 C 1.34780 * 119.99360 * 274.99921 * 12 2 1 14 14 O 1.21712 * 120.00290 * 359.97438 * 13 12 2 15 15 C 1.46319 * 119.99644 * 180.02562 * 13 12 2 16 16 C 1.35178 * 120.00243 * 186.66287 * 15 13 12 17 17 C 1.46529 * 119.99633 * 7.24845 * 16 15 13 18 18 N 1.31892 * 125.87374 * 49.08677 * 17 16 15 19 19 C 1.33175 * 109.21447 * 179.97438 * 18 17 16 20 20 C 1.35517 * 108.44597 * 0.02562 * 19 18 17 21 21 N 1.36243 * 107.10053 * 359.76823 * 20 19 18 22 22 H 0.97001 * 126.50572 * 180.24914 * 21 20 19 23 23 H 1.08998 * 109.46883 * 59.99477 * 1 2 3 24 24 H 1.08998 * 109.46684 * 299.99950 * 1 2 3 25 25 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 26 26 H 0.97002 * 119.99661 * 180.02562 * 7 6 4 27 27 H 0.96995 * 120.00146 * 94.99643 * 12 2 1 28 28 H 1.08004 * 120.00362 * 6.65643 * 15 13 12 29 29 H 1.07995 * 120.00540 * 187.25758 * 16 15 13 30 30 H 1.07998 * 125.77735 * 179.97438 * 19 18 17 31 31 H 1.08003 * 126.44647 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0081 9 1 1.3427 -2.1615 -4.4120 10 1 2.4866 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7123 12 7 2.0184 -0.6908 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8580 1.1626 2.4117 15 6 2.6353 -0.7081 3.5516 16 6 2.6376 -0.0735 4.7451 17 6 2.0070 1.2427 4.8761 18 7 0.7988 1.5660 4.4575 19 6 0.5624 2.8444 4.7463 20 6 1.6541 3.3526 5.3680 21 7 2.5684 2.3465 5.4580 22 1 3.4506 2.4025 5.8575 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7082 1.1610 -3.4844 27 1 2.2490 -1.6319 1.1524 28 1 2.9939 -1.7244 3.4798 29 1 3.1041 -0.5364 5.6021 30 1 -0.3453 3.3850 4.5222 31 1 1.7748 4.3635 5.7283 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493471325.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:31 Heat of formation + Delta-G solvation = 51.394542 kcal Electronic energy + Delta-G solvation = -16146.423017 eV Core-core repulsion = 13429.938918 eV Total energy + Delta-G solvation = -2716.484099 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.47488 -38.61426 -34.80354 -33.08442 -32.27200 -32.11142 -29.17395 -27.97165 -25.16006 -23.73708 -21.44177 -20.99559 -19.81383 -19.06439 -18.06577 -16.35984 -15.87810 -15.05945 -14.60374 -14.20604 -14.03563 -13.64051 -13.45558 -13.11986 -12.90015 -12.32352 -12.05164 -11.55135 -11.03504 -10.88613 -10.60256 -10.25832 -10.14248 -9.84655 -9.66331 -9.34219 -8.93655 -8.86748 -8.46399 -7.73760 -7.64931 -6.04762 -4.13787 1.28405 2.48229 3.28439 3.34801 3.37131 3.37901 3.74152 4.17961 4.25611 4.49262 4.75357 5.19928 5.27013 5.36161 5.60095 5.74662 5.86304 6.14925 6.42487 6.44179 6.97900 7.11533 7.16011 7.29931 7.61260 7.63368 7.70056 7.81556 8.04587 8.26196 8.52053 8.81585 8.90026 9.32648 9.54692 11.01102 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.045863 B = 0.005745 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.365756 B = 4872.598585 C = 5185.133108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.046 0.954 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.706 5.706 13 C 0.518 3.482 14 O -0.524 6.524 15 C -0.144 4.144 16 C -0.041 4.041 17 C 0.233 3.767 18 N -0.429 5.429 19 C -0.018 4.018 20 C -0.064 4.064 21 N -0.563 5.563 22 H 0.414 0.586 23 H 0.087 0.913 24 H 0.018 0.982 25 H 0.024 0.976 26 H 0.263 0.737 27 H 0.386 0.614 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.163 0.837 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.387 -0.563 15.153 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.064 0.936 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.354 5.354 13 C 0.303 3.697 14 O -0.401 6.401 15 C -0.168 4.168 16 C -0.062 4.062 17 C -0.026 4.026 18 N -0.147 5.147 19 C -0.171 4.171 20 C -0.199 4.199 21 N -0.166 5.166 22 H 0.251 0.749 23 H 0.106 0.894 24 H 0.037 0.963 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.218 0.782 28 H 0.153 0.847 29 H 0.155 0.845 30 H 0.181 0.819 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.478 -0.080 14.590 14.999 hybrid contribution 1.402 -0.271 -0.396 1.482 sum 4.881 -0.351 14.193 15.013 Atomic orbital electron populations 1.22042 0.98432 0.98969 1.00935 1.18667 0.91053 0.93791 0.79951 0.93618 1.21255 1.32266 1.13090 0.90472 0.92181 1.24897 0.94908 0.94966 0.99020 1.69920 1.35976 1.22506 1.23719 0.86464 0.79120 0.79271 0.82311 1.20563 1.21141 1.19917 1.46443 1.65055 1.13254 1.10639 1.18262 0.79856 0.87645 0.83904 1.90855 1.49282 1.15456 1.84556 1.23535 0.99827 1.00010 0.93426 1.21016 0.97643 0.90281 0.97286 1.21360 0.91818 0.89068 1.00391 1.70432 1.13694 1.14361 1.16164 1.22270 0.99358 0.92235 1.03202 1.22676 0.92175 0.94563 1.10482 1.43312 1.16279 1.10496 1.46490 0.74944 0.89447 0.96263 0.95692 0.92678 0.78175 0.84749 0.84451 0.81932 0.81193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.26 37.16 0.34 -3.50 16 2 C 0.27 7.13 2.56 -69.08 -0.18 6.95 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.56 8.73 -34.44 -0.30 -14.86 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.69 11.32 55.43 0.63 -25.07 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.71 -15.47 5.06 -56.36 -0.29 -15.75 16 13 C 0.52 10.94 7.54 -13.01 -0.10 10.85 16 14 O -0.52 -13.10 12.47 5.18 0.06 -13.03 16 15 C -0.14 -2.17 10.07 -37.42 -0.38 -2.55 16 16 C -0.04 -0.55 10.26 -37.33 -0.38 -0.93 16 17 C 0.23 3.84 6.11 -154.53 -0.94 2.90 16 18 N -0.43 -8.49 8.96 -11.42 -0.10 -8.59 16 19 C -0.02 -0.31 11.84 -17.94 -0.21 -0.52 16 20 C -0.06 -0.86 12.03 -16.56 -0.20 -1.06 16 21 N -0.56 -7.34 6.21 -10.76 -0.07 -7.40 16 22 H 0.41 3.69 8.96 -40.82 -0.37 3.33 16 23 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.39 7.24 8.52 -40.82 -0.35 6.90 16 28 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.16 2.41 8.06 -52.49 -0.42 1.99 16 31 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 274.28 15.07 4.13 4.13 Total: -1.00 -35.62 274.28 -6.59 -42.21 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -3.50 Total: 8.47 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -2.44 Total: -1.02 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.17 Total: -56.82 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.06 Total: -13.03 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -35.62 -6.59 -42.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493471325.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.605 kcal (2) G-P(sol) polarization free energy of solvation -35.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds