Wall clock time and date at job start Sun Mar 29 2020 22:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47457 * 2 1 4 4 C 1.50701 * 109.47010 * 240.00200 * 2 1 3 5 5 H 1.08002 * 120.00651 * 240.00298 * 4 2 1 6 6 C 1.37884 * 119.99909 * 60.00274 * 4 2 1 7 7 N 1.31509 * 119.99931 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99906 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47237 * 89.99743 * 8 6 4 10 10 H 1.48496 * 109.47047 * 210.00081 * 8 6 4 11 11 H 1.48503 * 109.46869 * 329.99543 * 8 6 4 12 12 N 1.46500 * 109.47226 * 120.00739 * 2 1 3 13 13 C 1.34780 * 119.99360 * 274.99921 * 12 2 1 14 14 O 1.21712 * 120.00290 * 359.97438 * 13 12 2 15 15 C 1.46319 * 119.99644 * 180.02562 * 13 12 2 16 16 C 1.35178 * 120.00243 * 186.66287 * 15 13 12 17 17 C 1.46529 * 119.99633 * 7.24845 * 16 15 13 18 18 N 1.31892 * 125.87374 * 49.08677 * 17 16 15 19 19 C 1.33175 * 109.21447 * 179.97438 * 18 17 16 20 20 C 1.35517 * 108.44597 * 0.02562 * 19 18 17 21 21 N 1.36243 * 107.10053 * 359.76823 * 20 19 18 22 22 H 0.97001 * 126.50572 * 180.24914 * 21 20 19 23 23 H 1.08998 * 109.46883 * 59.99477 * 1 2 3 24 24 H 1.08998 * 109.46684 * 299.99950 * 1 2 3 25 25 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 26 26 H 0.97002 * 119.99661 * 180.02562 * 7 6 4 27 27 H 0.96995 * 120.00146 * 94.99643 * 12 2 1 28 28 H 1.08004 * 120.00362 * 6.65643 * 15 13 12 29 29 H 1.07995 * 120.00540 * 187.25758 * 16 15 13 30 30 H 1.07998 * 125.77735 * 179.97438 * 19 18 17 31 31 H 1.08003 * 126.44647 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1202 -4.0081 9 1 1.3427 -2.1615 -4.4120 10 1 2.4866 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7123 12 7 2.0184 -0.6908 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8580 1.1626 2.4117 15 6 2.6353 -0.7081 3.5516 16 6 2.6376 -0.0735 4.7451 17 6 2.0070 1.2427 4.8761 18 7 0.7988 1.5660 4.4575 19 6 0.5624 2.8444 4.7463 20 6 1.6541 3.3526 5.3680 21 7 2.5684 2.3465 5.4580 22 1 3.4506 2.4025 5.8575 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7082 1.1610 -3.4844 27 1 2.2490 -1.6319 1.1524 28 1 2.9939 -1.7244 3.4798 29 1 3.1041 -0.5364 5.6021 30 1 -0.3453 3.3850 4.5222 31 1 1.7748 4.3635 5.7283 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493471325.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:30 Heat of formation + Delta-G solvation = 24.256583 kcal Electronic energy + Delta-G solvation = -16147.599807 eV Core-core repulsion = 13429.938918 eV Total energy + Delta-G solvation = -2717.660889 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.63004 -40.28463 -36.72126 -34.34881 -34.23810 -33.32742 -31.03308 -29.31248 -27.33354 -25.16163 -22.88503 -22.35683 -21.48145 -20.48881 -19.46885 -18.12420 -17.36605 -16.96186 -15.94841 -15.87444 -15.46999 -15.05262 -14.88363 -14.44833 -14.31937 -14.16277 -13.65242 -13.27986 -12.96492 -12.83032 -12.67998 -12.27653 -12.12474 -11.08168 -11.06972 -10.90352 -10.63528 -10.56908 -10.40521 -9.58165 -8.88680 -8.16047 -6.34265 0.12794 1.35355 1.44786 1.46348 1.56950 2.33735 2.38541 2.47213 2.71993 2.83622 3.13983 3.73418 4.11873 4.32275 4.49866 4.62892 4.74645 4.76443 4.95982 5.02535 5.12976 5.27912 5.34752 5.49609 5.66010 5.74037 5.94616 5.98965 6.12999 6.66902 6.75278 7.12874 7.34689 7.35398 7.74757 8.90503 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.045863 B = 0.005745 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.365756 B = 4872.598585 C = 5185.133108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.276 3.724 3 H -0.009 1.009 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.977 3.023 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.262 1.262 12 N -0.706 5.706 13 C 0.507 3.493 14 O -0.571 6.571 15 C -0.164 4.164 16 C -0.013 4.013 17 C 0.204 3.796 18 N -0.486 5.486 19 C -0.070 4.070 20 C -0.036 4.036 21 N -0.548 5.548 22 H 0.435 0.565 23 H 0.063 0.937 24 H 0.005 0.995 25 H 0.037 0.963 26 H 0.265 0.735 27 H 0.403 0.597 28 H 0.182 0.818 29 H 0.198 0.802 30 H 0.164 0.836 31 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.390 -2.137 16.452 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.172 3.828 3 H 0.009 0.991 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.189 4.189 7 N -0.559 5.559 8 Si 0.801 3.199 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.186 1.186 12 N -0.356 5.356 13 C 0.296 3.704 14 O -0.452 6.452 15 C -0.187 4.187 16 C -0.034 4.034 17 C -0.056 4.056 18 N -0.205 5.205 19 C -0.221 4.221 20 C -0.172 4.172 21 N -0.152 5.152 22 H 0.276 0.724 23 H 0.082 0.918 24 H 0.024 0.976 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.238 0.762 28 H 0.200 0.800 29 H 0.215 0.785 30 H 0.181 0.819 31 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 5.519 -1.693 15.933 16.947 hybrid contribution 0.749 0.363 -0.693 1.083 sum 6.268 -1.330 15.240 16.533 Atomic orbital electron populations 1.21844 0.98819 0.99040 0.99026 1.18195 0.90684 0.91605 0.82276 0.99106 1.21585 1.32484 1.13496 0.90821 0.90707 1.25885 0.94897 0.95591 1.02555 1.70085 1.37182 1.24150 1.24532 0.85280 0.79027 0.77954 0.77663 1.19591 1.21264 1.18576 1.46194 1.65528 1.13988 1.09845 1.19311 0.78576 0.87404 0.85117 1.90835 1.51150 1.17799 1.85382 1.23496 1.02159 1.02067 0.91005 1.21755 0.94729 0.88400 0.98476 1.21925 0.91733 0.91058 1.00854 1.70304 1.16249 1.16104 1.17817 1.22598 1.01315 0.92331 1.05854 1.23258 0.90556 0.95916 1.07499 1.43267 1.17049 1.09476 1.45430 0.72392 0.91779 0.97625 0.94379 0.92634 0.76169 0.80046 0.78512 0.81898 0.76838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.10 9.26 71.98 0.67 -6.43 16 2 C 0.28 15.26 2.56 44.25 0.11 15.37 16 3 H -0.01 -0.59 7.58 -2.39 -0.02 -0.60 16 4 C -0.55 -30.04 8.73 25.60 0.22 -29.81 16 5 H 0.07 3.80 7.74 -2.91 -0.02 3.78 16 6 C 0.01 0.57 5.30 84.66 0.45 1.02 16 7 N -0.92 -55.07 11.32 21.45 0.24 -54.83 16 8 Si 0.98 43.04 29.54 68.60 2.03 45.07 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 12 N -0.71 -31.19 5.06 -450.42 -2.28 -33.47 16 13 C 0.51 21.57 7.54 86.34 0.65 22.22 16 14 O -0.57 -29.65 12.47 -4.39 -0.05 -29.70 16 15 C -0.16 -4.53 10.07 23.67 0.24 -4.29 16 16 C -0.01 -0.30 10.26 23.73 0.24 -0.06 16 17 C 0.20 6.47 6.11 135.89 0.83 7.30 16 18 N -0.49 -19.64 8.96 -190.03 -1.70 -21.34 16 19 C -0.07 -2.43 11.84 83.86 0.99 -1.43 16 20 C -0.04 -0.90 12.03 83.38 1.00 0.10 16 21 N -0.55 -13.01 6.21 -187.94 -1.17 -14.17 16 22 H 0.44 6.27 8.96 -92.71 -0.83 5.44 16 23 H 0.06 3.82 6.07 -2.39 -0.01 3.81 16 24 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 25 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 27 H 0.40 14.73 8.52 -92.71 -0.79 13.94 16 28 H 0.18 3.18 8.06 -2.91 -0.02 3.15 16 29 H 0.20 2.23 8.06 -2.91 -0.02 2.20 16 30 H 0.16 5.19 8.06 -2.91 -0.02 5.16 16 31 H 0.22 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -82.95 274.28 2.02 -80.93 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -0.46 Total: 23.53 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 5.41 Total: 3.98 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -4.91 Total: -123.81 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.05 Total: -29.70 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -82.95 2.02 -80.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493471325.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.190 kcal (2) G-P(sol) polarization free energy of solvation -82.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds