Wall clock time and date at job start Sun Mar 29 2020 22:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 120.00356 * 2 1 4 4 C 1.50696 * 109.47578 * 270.00271 * 3 2 1 5 5 H 1.07995 * 120.00141 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99919 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99977 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99807 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47030 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46757 * 120.00113 * 8 6 4 11 11 H 1.48499 * 109.47232 * 240.00020 * 8 6 4 12 12 C 1.34782 * 119.99570 * 180.02562 * 2 1 3 13 13 O 1.21720 * 119.99493 * 180.02562 * 12 2 1 14 14 C 1.46310 * 120.00240 * 0.27501 * 12 2 1 15 15 C 1.35171 * 120.00191 * 187.48196 * 14 12 2 16 16 C 1.46520 * 120.00116 * 30.00697 * 15 14 12 17 17 N 1.31895 * 125.87929 * 7.13733 * 16 15 14 18 18 C 1.33169 * 109.22047 * 179.97438 * 17 16 15 19 19 C 1.35513 * 108.44894 * 359.97438 * 18 17 16 20 20 N 1.36254 * 107.09971 * 359.77755 * 19 18 17 21 21 H 0.96993 * 126.50409 * 180.25850 * 20 19 18 22 22 H 1.08999 * 109.47455 * 269.99571 * 1 2 3 23 23 H 1.09002 * 109.46960 * 29.99794 * 1 2 3 24 24 H 1.09001 * 109.47388 * 149.99112 * 1 2 3 25 25 H 1.09010 * 109.46835 * 30.00357 * 3 2 1 26 26 H 1.09003 * 109.47261 * 149.99395 * 3 2 1 27 27 H 0.97002 * 119.99591 * 179.97438 * 7 6 4 28 28 H 1.08001 * 120.00476 * 7.47856 * 14 12 2 29 29 H 1.08006 * 120.00299 * 210.00889 * 15 14 12 30 30 H 1.08001 * 125.77453 * 180.02562 * 18 17 16 31 31 H 1.07998 * 126.44839 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0981 1.0959 -2.2417 6 6 3.1261 2.8780 -1.6726 7 7 3.5526 3.6185 -0.6729 8 14 3.4381 3.4170 -3.4337 9 1 2.8610 2.4166 -4.3671 10 1 2.8000 4.7375 -3.6676 11 1 4.9007 3.5258 -3.6664 12 6 2.1388 -1.1673 -0.0005 13 8 3.3560 -1.1673 -0.0001 14 6 1.4072 -2.4343 -0.0072 15 6 2.0737 -3.6005 0.1447 16 6 3.3081 -3.6415 0.9331 17 7 3.8006 -2.6501 1.6501 18 6 4.9318 -3.0479 2.2295 19 6 5.1681 -4.3333 1.8713 20 7 4.1449 -4.7169 1.0574 21 1 4.0321 -5.5867 0.6432 22 1 -0.3634 -0.0001 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8899 -0.5140 25 1 1.6084 2.0283 0.5139 26 1 3.1499 1.1383 0.5139 27 1 4.0295 4.4444 -0.8501 28 1 0.3346 -2.4380 -0.1334 29 1 1.6965 -4.5020 -0.3151 30 1 5.5549 -2.4479 2.8761 31 1 6.0071 -4.9407 2.1770 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493634829.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:35 Heat of formation + Delta-G solvation = 73.211709 kcal Electronic energy + Delta-G solvation = -16181.896343 eV Core-core repulsion = 13466.358307 eV Total energy + Delta-G solvation = -2715.538036 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.56424 -38.58405 -34.64402 -33.13559 -32.40388 -32.23719 -28.66699 -27.52733 -25.63231 -23.96993 -22.04941 -21.36364 -19.92486 -18.57226 -17.10105 -16.37436 -16.13960 -15.02955 -14.62158 -14.35290 -14.21501 -13.85745 -13.49579 -12.98586 -12.70119 -12.28241 -12.00319 -11.99098 -11.56547 -11.06671 -10.78666 -10.44134 -10.07151 -9.84734 -9.59447 -9.56717 -9.29423 -8.58892 -8.32402 -7.56428 -7.32384 -5.92274 -3.96478 1.04273 2.58440 3.24416 3.36058 3.43126 3.47622 3.78390 4.22796 4.36730 4.55760 4.69623 5.11486 5.27821 5.40240 5.45794 5.67398 5.75978 5.88619 6.09620 6.15729 6.30967 6.40816 6.46855 7.03049 7.28739 7.54022 7.66427 7.78245 8.06536 8.38839 8.47118 8.69544 9.05785 9.43915 9.68926 11.15383 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.030709 B = 0.006578 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.566551 B = 4255.490794 C = 4639.604129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.602 5.602 3 C 0.248 3.752 4 C -0.521 4.521 5 H 0.056 0.944 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.528 3.472 13 O -0.503 6.503 14 C -0.156 4.156 15 C -0.041 4.041 16 C 0.214 3.786 17 N -0.408 5.408 18 C -0.025 4.025 19 C -0.057 4.057 20 N -0.567 5.567 21 H 0.415 0.585 22 H 0.041 0.959 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.029 0.971 26 H 0.045 0.955 27 H 0.261 0.739 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.166 0.834 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 -16.874 3.450 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.335 5.335 3 C 0.128 3.872 4 C -0.560 4.560 5 H 0.074 0.926 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.315 3.685 13 O -0.378 6.378 14 C -0.181 4.181 15 C -0.062 4.062 16 C -0.043 4.043 17 N -0.125 5.125 18 C -0.178 4.178 19 C -0.193 4.193 20 N -0.170 5.170 21 H 0.252 0.748 22 H 0.060 0.940 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.184 0.816 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.507 -15.855 3.605 16.633 hybrid contribution 0.552 -0.822 -1.329 1.657 sum -2.954 -16.676 2.275 17.088 Atomic orbital electron populations 1.21623 0.82014 1.02144 1.00164 1.48045 1.05748 1.07875 1.71841 1.19220 0.92690 0.78199 0.97085 1.21522 1.35975 1.05951 0.92533 0.92568 1.24941 0.95576 0.96519 0.97222 1.69955 1.38720 1.14322 1.30514 0.86476 0.77989 0.78228 0.84903 1.19894 1.21035 1.20989 1.18013 0.87751 0.83606 0.79116 1.90835 1.12936 1.86556 1.47457 1.23489 0.99537 0.93609 1.01444 1.20955 0.90556 0.98401 0.96302 1.21721 0.95548 0.83385 1.03657 1.70777 1.09314 1.24588 1.07855 1.22494 0.97536 0.93358 1.04447 1.22796 0.95416 0.99112 1.01971 1.43422 1.20086 1.14284 1.39159 0.74832 0.94004 0.91123 0.92578 0.95293 0.93672 0.92924 0.84495 0.84546 0.81637 0.80927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.44 10.20 59.84 0.61 2.05 16 2 N -0.60 -13.81 2.86 -184.65 -0.53 -14.34 16 3 C 0.25 6.90 5.16 -5.20 -0.03 6.88 16 4 C -0.52 -15.48 9.39 -34.44 -0.32 -15.80 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 8 Si 0.90 22.63 29.54 -169.99 -5.02 17.61 16 9 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 12 C 0.53 11.97 7.07 -13.01 -0.09 11.88 16 13 O -0.50 -13.56 12.78 5.17 0.07 -13.50 16 14 C -0.16 -2.54 9.20 -37.43 -0.34 -2.89 16 15 C -0.04 -0.58 10.10 -37.34 -0.38 -0.96 16 16 C 0.21 3.57 7.17 -154.52 -1.11 2.46 16 17 N -0.41 -8.30 7.85 -11.42 -0.09 -8.39 16 18 C -0.03 -0.43 11.84 -17.95 -0.21 -0.64 16 19 C -0.06 -0.73 12.03 -16.56 -0.20 -0.93 16 20 N -0.57 -7.00 6.21 -10.76 -0.07 -7.07 16 21 H 0.41 3.30 8.96 -40.82 -0.37 2.93 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 24 H 0.06 0.76 6.00 -51.93 -0.31 0.45 16 25 H 0.03 0.81 8.07 -51.92 -0.42 0.39 16 26 H 0.05 1.43 7.42 -51.93 -0.39 1.04 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.14 1.69 6.14 -52.49 -0.32 1.37 16 29 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 30 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 31 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 274.57 15.07 4.14 4.14 Total: -1.00 -38.57 274.57 -6.39 -44.96 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -3.46 Total: -0.17 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -2.17 Total: 3.71 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.05 Total: -56.76 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.07 Total: -13.50 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -38.57 -6.39 -44.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493634829.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.176 kcal (2) G-P(sol) polarization free energy of solvation -38.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds