Wall clock time and date at job start Sun Mar 29 2020 22:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 120.00356 * 2 1 4 4 C 1.50696 * 109.47578 * 270.00271 * 3 2 1 5 5 H 1.07995 * 120.00141 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99919 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99977 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99807 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47030 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46757 * 120.00113 * 8 6 4 11 11 H 1.48499 * 109.47232 * 240.00020 * 8 6 4 12 12 C 1.34782 * 119.99570 * 180.02562 * 2 1 3 13 13 O 1.21720 * 119.99493 * 180.02562 * 12 2 1 14 14 C 1.46310 * 120.00240 * 0.27501 * 12 2 1 15 15 C 1.35171 * 120.00191 * 187.48196 * 14 12 2 16 16 C 1.46520 * 120.00116 * 30.00697 * 15 14 12 17 17 N 1.31895 * 125.87929 * 7.13733 * 16 15 14 18 18 C 1.33169 * 109.22047 * 179.97438 * 17 16 15 19 19 C 1.35513 * 108.44894 * 359.97438 * 18 17 16 20 20 N 1.36254 * 107.09971 * 359.77755 * 19 18 17 21 21 H 0.96993 * 126.50409 * 180.25850 * 20 19 18 22 22 H 1.08999 * 109.47455 * 269.99571 * 1 2 3 23 23 H 1.09002 * 109.46960 * 29.99794 * 1 2 3 24 24 H 1.09001 * 109.47388 * 149.99112 * 1 2 3 25 25 H 1.09010 * 109.46835 * 30.00357 * 3 2 1 26 26 H 1.09003 * 109.47261 * 149.99395 * 3 2 1 27 27 H 0.97002 * 119.99591 * 179.97438 * 7 6 4 28 28 H 1.08001 * 120.00476 * 7.47856 * 14 12 2 29 29 H 1.08006 * 120.00299 * 210.00889 * 15 14 12 30 30 H 1.08001 * 125.77453 * 180.02562 * 18 17 16 31 31 H 1.07998 * 126.44839 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0981 1.0959 -2.2417 6 6 3.1261 2.8780 -1.6726 7 7 3.5526 3.6185 -0.6729 8 14 3.4381 3.4170 -3.4337 9 1 2.8610 2.4166 -4.3671 10 1 2.8000 4.7375 -3.6676 11 1 4.9007 3.5258 -3.6664 12 6 2.1388 -1.1673 -0.0005 13 8 3.3560 -1.1673 -0.0001 14 6 1.4072 -2.4343 -0.0072 15 6 2.0737 -3.6005 0.1447 16 6 3.3081 -3.6415 0.9331 17 7 3.8006 -2.6501 1.6501 18 6 4.9318 -3.0479 2.2295 19 6 5.1681 -4.3333 1.8713 20 7 4.1449 -4.7169 1.0574 21 1 4.0321 -5.5867 0.6432 22 1 -0.3634 -0.0001 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8899 -0.5140 25 1 1.6084 2.0283 0.5139 26 1 3.1499 1.1383 0.5139 27 1 4.0295 4.4444 -0.8501 28 1 0.3346 -2.4380 -0.1334 29 1 1.6965 -4.5020 -0.3151 30 1 5.5549 -2.4479 2.8761 31 1 6.0071 -4.9407 2.1770 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493634829.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:35 Heat of formation + Delta-G solvation = 44.237366 kcal Electronic energy + Delta-G solvation = -16183.152765 eV Core-core repulsion = 13466.358307 eV Total energy + Delta-G solvation = -2716.794457 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.70834 -40.26633 -36.45583 -34.73155 -34.28563 -33.41989 -30.26460 -29.18494 -27.21062 -25.75414 -23.69140 -22.51666 -21.30100 -19.82445 -18.69894 -18.51712 -17.58626 -16.85429 -16.09427 -15.85750 -15.76693 -15.21898 -14.78137 -14.34708 -14.19492 -13.92655 -13.65111 -13.44894 -13.37081 -12.98438 -12.74450 -12.44753 -12.17249 -11.65832 -11.04789 -10.81046 -10.69638 -10.63415 -10.21253 -9.19181 -8.75339 -8.18640 -6.35275 -0.13593 1.35041 1.38117 1.45396 1.50477 2.26346 2.35158 2.51123 2.67348 2.81564 3.08380 3.67185 4.03118 4.18799 4.43729 4.50744 4.60306 4.71322 4.79929 4.93499 5.04326 5.06363 5.21997 5.28808 5.46443 5.62318 5.86568 5.98142 6.11998 6.62914 6.74726 7.00908 7.31914 7.33021 7.79525 8.87536 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.030709 B = 0.006578 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.566551 B = 4255.490794 C = 4639.604129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.616 5.616 3 C 0.265 3.735 4 C -0.538 4.538 5 H 0.053 0.947 6 C 0.002 3.998 7 N -0.932 5.932 8 Si 0.972 3.028 9 H -0.266 1.266 10 H -0.266 1.266 11 H -0.282 1.282 12 C 0.515 3.485 13 O -0.563 6.563 14 C -0.187 4.187 15 C -0.006 4.006 16 C 0.177 3.823 17 N -0.471 5.471 18 C -0.083 4.083 19 C -0.014 4.014 20 N -0.544 5.544 21 H 0.439 0.561 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.100 0.900 25 H 0.016 0.984 26 H -0.010 1.010 27 H 0.266 0.734 28 H 0.182 0.818 29 H 0.200 0.800 30 H 0.163 0.837 31 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 -19.794 1.918 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.349 5.349 3 C 0.143 3.857 4 C -0.576 4.576 5 H 0.071 0.929 6 C -0.196 4.196 7 N -0.572 5.572 8 Si 0.796 3.204 9 H -0.190 1.190 10 H -0.191 1.191 11 H -0.208 1.208 12 C 0.306 3.694 13 O -0.442 6.442 14 C -0.211 4.211 15 C -0.027 4.027 16 C -0.080 4.080 17 N -0.190 5.190 18 C -0.234 4.234 19 C -0.152 4.152 20 N -0.149 5.149 21 H 0.281 0.719 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.118 0.882 25 H 0.034 0.966 26 H 0.008 0.992 27 H 0.075 0.925 28 H 0.199 0.801 29 H 0.216 0.784 30 H 0.181 0.819 31 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.577 -18.822 2.066 19.480 hybrid contribution 0.989 -0.019 -0.719 1.223 sum -3.588 -18.841 1.346 19.227 Atomic orbital electron populations 1.21903 0.78353 1.03903 1.01999 1.48098 1.08097 1.06409 1.72253 1.18610 0.90758 0.80619 0.95749 1.21759 1.36524 1.06345 0.93010 0.92907 1.25950 0.94959 0.96455 1.02258 1.70090 1.39183 1.14830 1.33131 0.85309 0.77807 0.78467 0.78832 1.18965 1.19146 1.20828 1.19112 0.87635 0.85305 0.77342 1.90793 1.15702 1.87621 1.50114 1.23383 1.01364 0.90583 1.05764 1.21756 0.88349 0.99951 0.92614 1.22163 0.97261 0.83970 1.04569 1.70635 1.11250 1.27408 1.09683 1.22800 0.98034 0.95877 1.06720 1.23427 0.95369 0.97612 0.98770 1.43346 1.18855 1.14508 1.38152 0.71893 0.92065 0.91947 0.88194 0.96623 0.99189 0.92486 0.80092 0.78356 0.81938 0.75915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.66 10.20 127.77 1.30 3.97 16 2 N -0.62 -29.20 2.86 -856.31 -2.45 -31.64 16 3 C 0.26 15.72 5.16 85.63 0.44 16.16 16 4 C -0.54 -33.17 9.39 25.60 0.24 -32.93 16 5 H 0.05 3.21 7.81 -2.91 -0.02 3.19 16 6 C 0.00 0.12 5.46 84.66 0.46 0.58 16 7 N -0.93 -59.75 13.29 21.45 0.28 -59.47 16 8 Si 0.97 47.10 29.54 68.60 2.03 49.13 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 12 C 0.52 23.97 7.07 86.34 0.61 24.58 16 13 O -0.56 -32.09 12.78 -4.41 -0.06 -32.15 16 14 C -0.19 -5.71 9.20 23.66 0.22 -5.49 16 15 C -0.01 -0.15 10.10 23.72 0.24 0.09 16 16 C 0.18 5.67 7.17 135.88 0.97 6.65 16 17 N -0.47 -19.79 7.85 -190.04 -1.49 -21.29 16 18 C -0.08 -2.83 11.84 83.86 0.99 -1.84 16 19 C -0.01 -0.32 12.03 83.38 1.00 0.69 16 20 N -0.54 -11.71 6.21 -187.94 -1.17 -12.87 16 21 H 0.44 4.93 8.96 -92.71 -0.83 4.09 16 22 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.06 2.14 8.07 -2.39 -0.02 2.12 16 24 H 0.10 2.40 6.00 -2.39 -0.01 2.39 16 25 H 0.02 0.95 8.07 -2.38 -0.02 0.93 16 26 H -0.01 -0.70 7.42 -2.39 -0.02 -0.71 16 27 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 28 H 0.18 3.71 6.14 -2.91 -0.02 3.69 16 29 H 0.20 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.16 5.23 8.06 -2.91 -0.02 5.21 16 31 H 0.22 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -92.95 274.57 3.95 -88.99 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 0.32 Total: 6.85 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 6.49 Total: 12.45 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -4.82 Total: -125.27 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.06 Total: -32.15 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -92.95 3.95 -88.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493634829.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.230 kcal (2) G-P(sol) polarization free energy of solvation -92.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds