Wall clock time and date at job start Sun Mar 29 2020 22:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.50703 * 109.46877 * 269.72094 * 3 2 1 5 5 H 1.08005 * 119.99817 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00081 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99848 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00321 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46844 * 60.00490 * 8 6 4 10 10 H 1.48496 * 109.47153 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47045 * 300.00555 * 8 6 4 12 12 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 13 13 O 1.21718 * 119.99860 * 180.27584 * 12 2 1 14 14 C 1.46316 * 120.00163 * 0.28244 * 12 2 1 15 15 C 1.35168 * 120.00653 * 179.97438 * 14 12 2 16 16 C 1.46526 * 120.00764 * 179.97438 * 15 14 12 17 17 N 1.31884 * 125.87410 * 359.68686 * 16 15 14 18 18 C 1.33176 * 109.22022 * 179.83632 * 17 16 15 19 19 C 1.35521 * 108.43829 * 0.43290 * 18 17 16 20 20 N 1.36238 * 107.10280 * 359.73859 * 19 18 17 21 21 H 0.97005 * 126.50456 * 179.97438 * 20 19 18 22 22 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 23 23 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 24 24 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 25 25 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 26 26 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 27 27 H 0.96998 * 119.99944 * 179.97438 * 7 6 4 28 28 H 1.08004 * 120.00259 * 359.97438 * 14 12 2 29 29 H 1.08004 * 119.99088 * 359.97438 * 15 14 12 30 30 H 1.07995 * 125.78061 * 180.15841 * 18 17 16 31 31 H 1.08001 * 126.44425 * 179.77669 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4547 1.7003 -1.4208 5 1 2.1068 1.0906 -2.2417 6 6 3.1331 2.8738 -1.6729 7 7 3.5563 3.6164 -0.6732 8 14 3.4525 3.4083 -3.4340 9 1 2.1581 3.5835 -4.1405 10 1 4.1949 4.6944 -3.4340 11 1 4.2587 2.3718 -4.1274 12 6 2.1388 -1.1672 0.0057 13 8 3.3560 -1.1672 0.0108 14 6 1.4073 -2.4343 0.0057 15 6 2.0830 -3.6050 0.0110 16 6 1.3504 -4.8740 0.0115 17 7 0.0385 -5.0090 0.0131 18 6 -0.2689 -6.3048 0.0095 19 6 0.8831 -7.0186 0.0153 20 7 1.9095 -6.1227 0.0165 21 1 2.8570 -6.3307 0.0206 22 1 -0.3632 0.0000 -1.0277 23 1 -0.3634 -0.8898 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 1.6063 2.0296 0.5094 26 1 3.1478 1.1396 0.5181 27 1 4.0339 4.4418 -0.8505 28 1 0.3272 -2.4344 0.0015 29 1 3.1630 -3.6049 0.0147 30 1 -1.2671 -6.7169 0.0074 31 1 0.9708 -8.0950 0.0177 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493634830.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:38 Heat of formation + Delta-G solvation = 43.729633 kcal Electronic energy + Delta-G solvation = -15561.282387 eV Core-core repulsion = 12844.465912 eV Total energy + Delta-G solvation = -2716.816474 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.01260 -38.91282 -34.85552 -33.49908 -32.69520 -32.50696 -29.05230 -27.66983 -25.84098 -24.20036 -22.24184 -21.77008 -20.21402 -18.21590 -17.90721 -16.49153 -16.34591 -15.36003 -15.13019 -14.45291 -14.26689 -14.16772 -13.94044 -13.42338 -12.76684 -12.39969 -12.15850 -12.04536 -11.51782 -11.13720 -10.87267 -10.52121 -10.40296 -10.22731 -10.12946 -10.03595 -9.61325 -9.01351 -8.40029 -8.10406 -7.58362 -6.01092 -4.05715 0.96028 2.26983 2.86653 3.19205 3.35025 3.38736 3.42300 3.96845 4.08760 4.38638 4.48917 4.83781 5.09553 5.22765 5.31752 5.38434 5.47312 5.77050 5.88456 6.05620 6.28026 6.30582 6.42418 6.59692 7.10415 7.13675 7.46080 7.56536 7.89027 7.95184 8.26312 8.42424 8.91867 9.08975 9.58982 11.06970 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.045093 B = 0.004698 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.789220 B = 5958.238101 C = 6077.155661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.592 5.592 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.530 3.470 13 O -0.545 6.545 14 C -0.136 4.136 15 C -0.043 4.043 16 C 0.230 3.770 17 N -0.470 5.470 18 C -0.027 4.027 19 C -0.051 4.051 20 N -0.558 5.558 21 H 0.423 0.577 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.034 0.966 26 H 0.045 0.955 27 H 0.264 0.736 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.172 0.828 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.474 -18.372 2.259 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.323 5.323 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.318 3.682 13 O -0.425 6.425 14 C -0.161 4.161 15 C -0.065 4.065 16 C -0.028 4.028 17 N -0.189 5.189 18 C -0.178 4.178 19 C -0.187 4.187 20 N -0.161 5.161 21 H 0.261 0.739 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.189 0.811 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.349 -17.521 2.313 18.779 hybrid contribution 1.039 -0.544 -1.031 1.561 sum -5.310 -18.065 1.283 18.873 Atomic orbital electron populations 1.21725 0.81058 1.01932 1.01502 1.48067 1.06437 1.07766 1.70029 1.19348 0.92634 0.77930 0.97602 1.21406 1.36496 1.06301 0.92281 0.92445 1.24931 0.95367 0.96345 0.97459 1.69927 1.38478 1.14324 1.30779 0.86545 0.78383 0.77761 0.84660 1.20215 1.21179 1.20204 1.18086 0.87408 0.84087 0.78576 1.90778 1.13495 1.87508 1.50698 1.23398 1.01348 0.92299 0.99073 1.21003 0.99030 0.87105 0.99344 1.21681 0.88748 0.85688 1.06671 1.70389 1.10567 1.19711 1.18268 1.22424 0.98579 0.89095 1.07697 1.22915 0.87945 0.96463 1.11370 1.43402 1.10082 1.06842 1.55725 0.73854 0.92953 0.91999 0.91286 0.94795 0.93704 0.92676 0.84296 0.83927 0.81083 0.80414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.19 59.85 0.61 1.98 16 2 N -0.59 -13.11 2.86 -184.65 -0.53 -13.63 16 3 C 0.24 6.53 5.21 -5.19 -0.03 6.50 16 4 C -0.53 -15.25 9.39 -34.44 -0.32 -15.57 16 5 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 8 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.53 11.53 7.60 -13.01 -0.10 11.44 16 13 O -0.54 -13.92 15.81 5.17 0.08 -13.83 16 14 C -0.14 -2.30 8.84 -37.43 -0.33 -2.63 16 15 C -0.04 -0.64 9.75 -37.34 -0.36 -1.01 16 16 C 0.23 3.08 7.89 -154.54 -1.22 1.86 16 17 N -0.47 -6.69 10.76 -11.42 -0.12 -6.81 16 18 C -0.03 -0.29 11.84 -17.94 -0.21 -0.50 16 19 C -0.05 -0.43 12.03 -16.56 -0.20 -0.63 16 20 N -0.56 -5.35 6.21 -10.76 -0.07 -5.41 16 21 H 0.42 2.69 8.96 -40.82 -0.37 2.33 16 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.06 0.85 6.09 -51.93 -0.32 0.54 16 24 H 0.07 1.09 7.89 -51.93 -0.41 0.68 16 25 H 0.03 0.91 7.89 -51.93 -0.41 0.50 16 26 H 0.04 1.34 7.42 -51.93 -0.39 0.95 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.14 2.14 5.87 -52.48 -0.31 1.83 16 29 H 0.14 2.05 7.52 -52.48 -0.39 1.65 16 30 H 0.17 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.18 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 280.00 15.07 4.22 4.22 Total: -1.00 -35.58 280.00 -6.36 -41.94 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -3.40 Total: -0.52 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -2.26 Total: 3.11 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.02 Total: -52.05 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -35.58 -6.36 -41.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493634830.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.673 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds