Wall clock time and date at job start Sun Mar 29 2020 22:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46975 * 2 1 4 4 C 1.36643 * 119.99772 * 263.82068 * 3 2 1 5 5 H 1.07997 * 119.99919 * 144.44920 * 4 3 2 6 6 C 1.39156 * 120.00305 * 324.44233 * 4 3 2 7 7 N 1.31302 * 120.00251 * 342.15833 * 6 4 3 8 8 Si 1.86795 * 120.00107 * 162.14807 * 6 4 3 9 9 H 1.48503 * 109.46906 * 60.00459 * 8 6 4 10 10 H 1.48499 * 109.47490 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47559 * 300.00850 * 8 6 4 12 12 C 1.34779 * 119.99998 * 83.82370 * 3 2 1 13 13 O 1.21784 * 119.99864 * 179.97438 * 12 3 2 14 14 C 1.41813 * 119.99595 * 0.27388 * 12 3 2 15 15 C 1.35373 * 119.99564 * 188.01442 * 14 12 3 16 16 C 1.46416 * 120.00218 * 30.18431 * 15 14 12 17 17 N 1.31943 * 125.88635 * 7.22300 * 16 15 14 18 18 C 1.33182 * 109.22525 * 179.97438 * 17 16 15 19 19 C 1.35514 * 108.45696 * 359.97438 * 18 17 16 20 20 N 1.36301 * 107.10973 * 359.76275 * 19 18 17 21 21 H 0.96998 * 126.51339 * 180.27256 * 20 19 18 22 22 H 1.08996 * 109.46816 * 299.99701 * 1 2 3 23 23 H 1.08996 * 109.47230 * 60.00031 * 1 2 3 24 24 H 1.08998 * 109.47125 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47164 * 240.00491 * 2 1 3 26 26 H 1.08996 * 109.47230 * 119.99969 * 2 1 3 27 27 H 0.97000 * 120.00401 * 179.97438 * 7 6 4 28 28 H 1.07998 * 120.00865 * 8.00906 * 14 12 3 29 29 H 1.08006 * 119.99824 * 210.18436 * 15 14 12 30 30 H 1.07999 * 125.77083 * 180.02562 * 18 17 16 31 31 H 1.08001 * 126.44191 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3661 1.9829 -1.1765 5 1 2.1749 3.0358 -1.3217 6 6 2.9669 1.2390 -2.1875 7 7 3.5158 0.0787 -1.9112 8 14 2.9920 1.8909 -3.9378 9 1 3.7117 3.1895 -3.9720 10 1 3.6852 0.9171 -4.8189 11 1 1.5989 2.0845 -4.4142 12 6 2.1245 2.0585 1.1604 13 8 2.5309 3.2065 1.1605 14 6 1.7691 1.4320 2.3820 15 6 1.7196 2.1562 3.5247 16 6 1.3732 3.5779 3.4760 17 7 0.9602 4.2373 2.4104 18 6 0.7399 5.5089 2.7395 19 6 1.0205 5.6660 4.0559 20 7 1.4155 4.4506 4.5297 21 1 1.6786 4.2437 5.4401 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.9343 -0.4401 -2.6160 28 1 1.5378 0.3772 2.4008 29 1 1.9357 1.6852 4.4723 30 1 0.3952 6.2835 2.0706 31 1 0.9422 6.5814 4.6237 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493683229.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:14 Heat of formation + Delta-G solvation = 54.675784 kcal Electronic energy + Delta-G solvation = -16541.623942 eV Core-core repulsion = 13825.282128 eV Total energy + Delta-G solvation = -2716.341814 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.62730 -40.31907 -36.85544 -34.36909 -33.72388 -33.34407 -31.06539 -29.64468 -27.22612 -24.68073 -23.67278 -22.46874 -21.64080 -19.87979 -18.93166 -18.29313 -17.61060 -16.73204 -15.93459 -15.70494 -15.42325 -15.08449 -14.80250 -14.42230 -14.23095 -13.90262 -13.49305 -13.37051 -13.36120 -12.83622 -12.57832 -12.22486 -12.06735 -11.77826 -10.97567 -10.86650 -10.69145 -10.45941 -9.99375 -9.25858 -8.65880 -8.25313 -5.93190 -0.09056 1.40059 1.40463 1.50884 1.53775 2.31950 2.33513 2.59293 2.79428 3.30420 3.39581 3.75955 4.20952 4.33828 4.44198 4.52930 4.63923 4.72281 4.77604 4.89479 5.08142 5.13167 5.31173 5.36643 5.45481 5.54518 5.69227 5.94536 6.31411 6.67749 6.71858 7.36306 7.43204 7.65361 8.36511 8.73396 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.033372 B = 0.007571 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.829502 B = 3697.382148 C = 4163.085619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.093 3.907 3 N -0.453 5.453 4 C -0.324 4.324 5 H 0.055 0.945 6 C -0.002 4.002 7 N -0.889 5.889 8 Si 0.980 3.020 9 H -0.281 1.281 10 H -0.267 1.267 11 H -0.267 1.267 12 C 0.469 3.531 13 O -0.600 6.600 14 C -0.181 4.181 15 C -0.026 4.026 16 C 0.186 3.814 17 N -0.465 5.465 18 C -0.084 4.084 19 C -0.019 4.019 20 N -0.547 5.547 21 H 0.437 0.563 22 H 0.048 0.952 23 H 0.033 0.967 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.274 0.726 28 H 0.157 0.843 29 H 0.189 0.811 30 H 0.165 0.835 31 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.613 1.298 12.909 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 N -0.172 5.172 4 C -0.453 4.453 5 H 0.072 0.928 6 C -0.204 4.204 7 N -0.528 5.528 8 Si 0.804 3.196 9 H -0.206 1.206 10 H -0.191 1.191 11 H -0.192 1.192 12 C 0.262 3.738 13 O -0.486 6.486 14 C -0.206 4.206 15 C -0.048 4.048 16 C -0.071 4.071 17 N -0.183 5.183 18 C -0.236 4.236 19 C -0.157 4.157 20 N -0.152 5.152 21 H 0.279 0.721 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.174 0.826 29 H 0.206 0.794 30 H 0.183 0.817 31 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -5.429 1.361 11.973 13.217 hybrid contribution 0.476 0.723 -0.093 0.871 sum -4.953 2.084 11.880 13.039 Atomic orbital electron populations 1.22097 0.95874 1.02090 1.00760 1.21719 0.93567 0.83933 1.03826 1.43741 1.55406 1.13118 1.04925 1.19290 1.38373 0.95246 0.92421 0.92759 1.26092 0.93990 0.96633 1.03675 1.69858 1.33897 1.14371 1.34639 0.85210 0.78778 0.77972 0.77652 1.20640 1.19109 1.19218 1.17951 0.83411 0.87353 0.85038 1.90663 1.51567 1.19200 1.87123 1.22453 1.03014 1.02008 0.93118 1.21557 0.96501 0.87031 0.99717 1.21992 1.07984 0.93917 0.83203 1.70725 1.14206 1.06481 1.26892 1.22846 1.09896 0.94994 0.95860 1.23415 1.05572 0.90547 0.96136 1.43383 1.50973 1.08405 1.12412 0.72142 0.93314 0.94799 0.89621 0.89082 0.91353 0.91660 0.82557 0.79436 0.81720 0.75892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.72 10.14 71.98 0.73 -4.99 16 2 C 0.09 4.24 5.29 86.38 0.46 4.70 16 3 N -0.45 -25.04 2.54 -645.43 -1.64 -26.68 16 4 C -0.32 -19.77 8.96 84.16 0.75 -19.02 16 5 H 0.05 3.61 7.70 -2.91 -0.02 3.59 16 6 C 0.00 -0.12 5.01 84.99 0.43 0.30 16 7 N -0.89 -49.64 11.17 21.70 0.24 -49.40 16 8 Si 0.98 44.87 29.59 68.60 2.03 46.90 16 9 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 12 C 0.47 25.26 6.82 85.12 0.58 25.84 16 13 O -0.60 -37.08 12.95 -4.62 -0.06 -37.14 16 14 C -0.18 -7.25 8.47 22.49 0.19 -7.06 16 15 C -0.03 -0.84 10.08 23.74 0.24 -0.60 16 16 C 0.19 6.87 7.13 135.83 0.97 7.84 16 17 N -0.46 -21.28 7.90 -190.06 -1.50 -22.79 16 18 C -0.08 -3.07 11.84 83.86 0.99 -2.08 16 19 C -0.02 -0.48 12.03 83.37 1.00 0.52 16 20 N -0.55 -13.80 6.22 -187.93 -1.17 -14.97 16 21 H 0.44 6.55 8.96 -92.71 -0.83 5.72 16 22 H 0.05 1.79 7.59 -2.39 -0.02 1.77 16 23 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.09 4.60 5.30 -2.39 -0.01 4.59 16 26 H 0.07 2.75 6.34 -2.39 -0.02 2.73 16 27 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.16 5.14 6.16 -2.91 -0.02 5.12 16 29 H 0.19 3.71 8.06 -2.91 -0.02 3.68 16 30 H 0.17 5.47 8.06 -2.91 -0.02 5.45 16 31 H 0.22 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -84.27 268.28 4.57 -79.71 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.32 Total: 18.90 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 6.34 Total: 5.46 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -4.07 Total: -113.83 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.06 Total: -37.14 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -84.27 4.57 -79.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493683229.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.381 kcal (2) G-P(sol) polarization free energy of solvation -84.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds