Wall clock time and date at job start Sun Mar 29 2020 22:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46502 * 120.00199 * 2 1 4 4 C 1.50699 * 109.46830 * 270.00143 * 3 2 1 5 5 H 1.08004 * 120.00714 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99945 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99898 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00011 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47319 * 89.99582 * 8 6 4 10 10 H 1.48497 * 109.47041 * 209.99585 * 8 6 4 11 11 H 1.48503 * 109.46970 * 329.99530 * 8 6 4 12 12 C 1.34779 * 119.99898 * 180.02562 * 2 1 3 13 13 O 1.21775 * 119.99753 * 179.97438 * 12 2 1 14 14 C 1.41579 * 120.00257 * 359.97438 * 12 2 1 15 15 C 1.35538 * 120.00038 * 188.32953 * 14 12 2 16 16 C 1.41795 * 120.00029 * 31.84704 * 15 14 12 17 17 C 1.38055 * 126.94881 * 187.17774 * 16 15 14 18 18 N 1.33326 * 107.58266 * 180.24354 * 17 16 15 19 19 C 1.30829 * 109.78313 * 359.55996 * 18 17 16 20 20 N 1.34663 * 109.43162 * 0.45041 * 19 18 17 21 21 H 0.97001 * 126.45436 * 179.73026 * 20 19 18 22 22 H 1.09003 * 109.46849 * 269.99936 * 1 2 3 23 23 H 1.09004 * 109.47546 * 29.99940 * 1 2 3 24 24 H 1.09001 * 109.47689 * 150.00538 * 1 2 3 25 25 H 1.08995 * 109.47176 * 29.99612 * 3 2 1 26 26 H 1.08996 * 109.47575 * 150.00478 * 3 2 1 27 27 H 0.97000 * 119.99389 * 180.02562 * 7 6 4 28 28 H 1.08002 * 119.99522 * 8.33386 * 14 12 2 29 29 H 1.07995 * 119.99809 * 211.85129 * 15 14 12 30 30 H 1.08000 * 126.21111 * 359.97438 * 17 16 15 31 31 H 1.07997 * 125.28169 * 180.13467 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0980 1.0958 -2.2418 6 6 3.1259 2.8779 -1.6728 7 7 3.3447 3.2578 -2.9128 8 14 3.7330 3.9292 -0.2531 9 1 5.1065 3.5080 0.1228 10 1 3.7479 5.3559 -0.6646 11 1 2.8271 3.7593 0.9113 12 6 2.1388 -1.1672 -0.0005 13 8 3.3565 -1.1672 -0.0010 14 6 1.4309 -2.3934 -0.0005 15 6 2.0980 -3.5610 0.1690 16 6 3.2645 -3.6007 0.9742 17 6 4.1266 -4.6670 1.1340 18 7 5.0866 -4.2859 1.9772 19 6 4.8849 -3.0474 2.3471 20 7 3.7684 -2.5797 1.7572 21 1 3.3892 -1.6930 1.8621 22 1 -0.3633 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5137 25 1 1.6084 2.0284 0.5137 26 1 3.1499 1.1384 0.5137 27 1 3.8215 4.0837 -3.0900 28 1 0.3594 -2.3982 -0.1357 29 1 1.7411 -4.4611 -0.3092 30 1 4.0372 -5.6357 0.6649 31 1 5.5134 -2.4886 3.0248 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493734346.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:29 Heat of formation + Delta-G solvation = 70.570506 kcal Electronic energy + Delta-G solvation = -16336.793419 eV Core-core repulsion = 13621.140853 eV Total energy + Delta-G solvation = -2715.652567 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.81941 -39.36250 -35.28301 -33.78748 -32.60488 -31.97857 -29.36173 -28.05949 -26.09712 -24.12354 -22.14125 -20.98387 -20.47578 -18.79745 -17.36904 -17.02077 -16.59310 -15.33379 -14.75532 -14.64103 -14.43224 -14.03582 -13.68678 -13.28612 -12.85967 -12.67867 -12.46830 -12.34230 -12.05272 -11.52166 -11.05153 -10.61578 -10.26387 -10.16821 -9.89498 -9.67537 -9.53957 -9.14103 -8.65917 -7.91686 -7.50966 -6.15052 -4.14565 0.66572 2.73876 3.22309 3.27819 3.29515 3.30495 3.44040 3.69783 3.98112 4.32392 4.77814 5.06837 5.11445 5.17385 5.34751 5.48635 5.55358 5.71229 5.75538 5.91904 6.08037 6.27382 6.52204 6.64956 6.80029 6.83865 7.21096 7.52454 7.59470 8.11416 8.15553 8.38996 8.80367 8.89388 9.44234 10.98392 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.030129 B = 0.007167 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.100792 B = 3905.776386 C = 4385.369057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.590 5.590 3 C 0.214 3.786 4 C -0.530 4.530 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.896 5.896 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.267 1.267 12 C 0.532 3.468 13 O -0.553 6.553 14 C -0.259 4.259 15 C 0.024 3.976 16 C -0.016 4.016 17 C 0.018 3.982 18 N -0.508 5.508 19 C 0.197 3.803 20 N -0.519 5.519 21 H 0.426 0.574 22 H 0.046 0.954 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.031 0.969 26 H 0.035 0.965 27 H 0.265 0.735 28 H 0.136 0.864 29 H 0.147 0.853 30 H 0.174 0.826 31 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 -11.031 9.960 15.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.320 5.320 3 C 0.093 3.907 4 C -0.569 4.569 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.191 1.191 12 C 0.324 3.676 13 O -0.435 6.435 14 C -0.281 4.281 15 C 0.003 3.997 16 C -0.132 4.132 17 C -0.136 4.136 18 N -0.227 5.227 19 C -0.086 4.086 20 N -0.123 5.123 21 H 0.271 0.729 22 H 0.065 0.935 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.154 0.846 29 H 0.165 0.835 30 H 0.191 0.809 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.439 -11.253 10.133 15.779 hybrid contribution -0.588 1.756 0.085 1.854 sum -5.027 -9.497 10.218 14.828 Atomic orbital electron populations 1.21738 0.80780 1.03209 1.00573 1.47913 1.06455 1.07360 1.70222 1.19679 0.92293 0.80156 0.98534 1.21302 1.37242 1.07184 0.91160 0.90788 1.24880 0.95214 0.97345 0.95610 1.69899 1.41265 1.23544 1.18666 0.86837 0.80010 0.79893 0.82826 1.19939 1.20948 1.19146 1.17119 0.87741 0.84332 0.78365 1.90808 1.13387 1.87619 1.51726 1.22257 1.00673 0.93235 1.11924 1.20621 0.90203 0.98529 0.90374 1.19187 1.01042 0.90091 1.02877 1.22966 0.91916 0.98975 0.99783 1.70024 1.26090 1.11219 1.15411 1.24940 0.89756 0.92512 1.01403 1.43910 1.20851 1.14484 1.33090 0.72933 0.93498 0.90534 0.91677 0.95152 0.94718 0.92481 0.84642 0.83505 0.80881 0.77931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 10.18 59.84 0.61 1.79 16 2 N -0.59 -11.65 2.86 -186.41 -0.53 -12.19 16 3 C 0.21 5.07 4.23 -5.19 -0.02 5.05 16 4 C -0.53 -15.14 9.94 -34.44 -0.34 -15.48 16 5 H 0.07 2.34 8.06 -52.48 -0.42 1.92 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 8 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 12 C 0.53 10.32 6.28 -14.99 -0.09 10.23 16 13 O -0.55 -12.65 12.24 5.12 0.06 -12.59 16 14 C -0.26 -3.76 9.03 -39.27 -0.35 -4.12 16 15 C 0.02 0.31 9.79 -39.19 -0.38 -0.07 16 16 C -0.02 -0.24 5.98 -83.71 -0.50 -0.74 16 17 C 0.02 0.26 11.91 -16.97 -0.20 0.06 16 18 N -0.51 -8.04 11.19 -14.05 -0.16 -8.20 16 19 C 0.20 2.86 12.99 -90.45 -1.17 1.69 16 20 N -0.52 -8.11 4.58 -11.76 -0.05 -8.16 16 21 H 0.43 6.86 6.24 -40.82 -0.25 6.61 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 24 H 0.06 0.79 5.99 -51.93 -0.31 0.48 16 25 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 26 H 0.03 0.86 6.85 -51.93 -0.36 0.51 16 27 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.14 1.55 6.03 -52.49 -0.32 1.23 16 29 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.20 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 267.84 15.07 4.04 4.04 Total: -1.00 -35.47 267.84 -6.41 -41.88 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.31 Total: 5.05 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -2.56 Total: 0.40 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.03 Total: -55.37 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.06 Total: -12.59 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -35.47 -6.41 -41.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493734346.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.450 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds