Wall clock time and date at job start Sun Mar 29 2020 22:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46502 * 120.00199 * 2 1 4 4 C 1.50699 * 109.46830 * 270.00143 * 3 2 1 5 5 H 1.08004 * 120.00714 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99945 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99898 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00011 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47319 * 89.99582 * 8 6 4 10 10 H 1.48497 * 109.47041 * 209.99585 * 8 6 4 11 11 H 1.48503 * 109.46970 * 329.99530 * 8 6 4 12 12 C 1.34779 * 119.99898 * 180.02562 * 2 1 3 13 13 O 1.21775 * 119.99753 * 179.97438 * 12 2 1 14 14 C 1.41579 * 120.00257 * 359.97438 * 12 2 1 15 15 C 1.35538 * 120.00038 * 188.32953 * 14 12 2 16 16 C 1.41795 * 120.00029 * 31.84704 * 15 14 12 17 17 C 1.38055 * 126.94881 * 187.17774 * 16 15 14 18 18 N 1.33326 * 107.58266 * 180.24354 * 17 16 15 19 19 C 1.30829 * 109.78313 * 359.55996 * 18 17 16 20 20 N 1.34663 * 109.43162 * 0.45041 * 19 18 17 21 21 H 0.97001 * 126.45436 * 179.73026 * 20 19 18 22 22 H 1.09003 * 109.46849 * 269.99936 * 1 2 3 23 23 H 1.09004 * 109.47546 * 29.99940 * 1 2 3 24 24 H 1.09001 * 109.47689 * 150.00538 * 1 2 3 25 25 H 1.08995 * 109.47176 * 29.99612 * 3 2 1 26 26 H 1.08996 * 109.47575 * 150.00478 * 3 2 1 27 27 H 0.97000 * 119.99389 * 180.02562 * 7 6 4 28 28 H 1.08002 * 119.99522 * 8.33386 * 14 12 2 29 29 H 1.07995 * 119.99809 * 211.85129 * 15 14 12 30 30 H 1.08000 * 126.21111 * 359.97438 * 17 16 15 31 31 H 1.07997 * 125.28169 * 180.13467 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0980 1.0958 -2.2418 6 6 3.1259 2.8779 -1.6728 7 7 3.3447 3.2578 -2.9128 8 14 3.7330 3.9292 -0.2531 9 1 5.1065 3.5080 0.1228 10 1 3.7479 5.3559 -0.6646 11 1 2.8271 3.7593 0.9113 12 6 2.1388 -1.1672 -0.0005 13 8 3.3565 -1.1672 -0.0010 14 6 1.4309 -2.3934 -0.0005 15 6 2.0980 -3.5610 0.1690 16 6 3.2645 -3.6007 0.9742 17 6 4.1266 -4.6670 1.1340 18 7 5.0866 -4.2859 1.9772 19 6 4.8849 -3.0474 2.3471 20 7 3.7684 -2.5797 1.7572 21 1 3.3892 -1.6930 1.8621 22 1 -0.3633 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5137 25 1 1.6084 2.0284 0.5137 26 1 3.1499 1.1384 0.5137 27 1 3.8215 4.0837 -3.0900 28 1 0.3594 -2.3982 -0.1357 29 1 1.7411 -4.4611 -0.3092 30 1 4.0372 -5.6357 0.6649 31 1 5.5134 -2.4886 3.0248 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493734346.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:29 Heat of formation + Delta-G solvation = 45.711039 kcal Electronic energy + Delta-G solvation = -16337.871407 eV Core-core repulsion = 13621.140853 eV Total energy + Delta-G solvation = -2716.730554 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.94466 -40.78699 -36.81923 -35.02392 -34.66048 -33.13042 -30.98841 -29.44856 -27.43156 -25.65422 -23.66045 -22.10802 -21.77334 -20.04947 -19.17581 -18.66863 -17.93106 -16.88363 -16.29210 -15.83830 -15.77481 -15.49649 -15.05446 -14.57247 -14.36984 -13.90147 -13.86281 -13.69644 -13.64591 -13.15894 -12.79772 -12.44553 -12.06231 -11.79061 -11.32657 -11.05724 -10.88353 -10.85103 -10.48849 -9.45400 -8.66893 -8.37503 -6.43215 -0.43744 1.29551 1.33365 1.42075 1.59044 2.13080 2.27327 2.33333 2.36433 2.65987 2.96930 3.78691 4.01388 4.08751 4.20953 4.42343 4.52567 4.61930 4.67655 4.76320 4.84004 4.95514 4.99160 5.24087 5.42190 5.52726 5.61979 5.76670 6.20349 6.45066 6.58624 6.69363 7.03897 7.17528 7.39251 8.79739 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.030129 B = 0.007167 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.100792 B = 3905.776386 C = 4385.369057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.602 5.602 3 C 0.224 3.776 4 C -0.537 4.537 5 H 0.023 0.977 6 C 0.007 3.993 7 N -0.947 5.947 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.276 1.276 11 H -0.235 1.235 12 C 0.524 3.476 13 O -0.601 6.601 14 C -0.281 4.281 15 C 0.050 3.950 16 C -0.046 4.046 17 C 0.020 3.980 18 N -0.535 5.535 19 C 0.192 3.808 20 N -0.528 5.528 21 H 0.422 0.578 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.268 0.732 28 H 0.170 0.830 29 H 0.194 0.806 30 H 0.206 0.794 31 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 -12.066 11.808 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.332 5.332 3 C 0.101 3.899 4 C -0.576 4.576 5 H 0.042 0.958 6 C -0.190 4.190 7 N -0.587 5.587 8 Si 0.775 3.225 9 H -0.202 1.202 10 H -0.201 1.201 11 H -0.158 1.158 12 C 0.319 3.681 13 O -0.487 6.487 14 C -0.303 4.303 15 C 0.029 3.971 16 C -0.161 4.161 17 C -0.134 4.134 18 N -0.255 5.255 19 C -0.090 4.090 20 N -0.131 5.131 21 H 0.265 0.735 22 H 0.098 0.902 23 H 0.081 0.919 24 H 0.110 0.890 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.187 0.813 29 H 0.211 0.789 30 H 0.223 0.777 31 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -5.480 -12.317 11.990 18.042 hybrid contribution -0.236 1.935 -0.536 2.022 sum -5.717 -10.382 11.454 16.482 Atomic orbital electron populations 1.22013 0.77797 1.03932 1.02927 1.47991 1.08394 1.06160 1.70607 1.19325 0.92801 0.82683 0.95092 1.21579 1.36842 1.06647 0.92527 0.95825 1.25929 0.95328 0.99026 0.98750 1.70066 1.42710 1.24496 1.21464 0.85655 0.79503 0.77648 0.79740 1.20166 1.20137 1.15809 1.17881 0.87491 0.85526 0.77163 1.90773 1.15542 1.88329 1.54084 1.22218 1.02151 0.91159 1.14762 1.21226 0.88338 0.99802 0.87755 1.19737 1.02314 0.90206 1.03802 1.23586 0.90999 1.00033 0.98819 1.70063 1.27008 1.11920 1.16484 1.25617 0.89623 0.92537 1.01263 1.44022 1.21227 1.14462 1.33437 0.73464 0.90179 0.91894 0.88967 0.93232 0.95927 0.92283 0.81303 0.78888 0.77746 0.75189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.05 10.18 127.77 1.30 3.35 16 2 N -0.60 -23.40 2.86 -861.87 -2.46 -25.86 16 3 C 0.22 10.56 4.23 85.63 0.36 10.92 16 4 C -0.54 -31.60 9.94 25.60 0.25 -31.35 16 5 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 6 C 0.01 0.44 5.47 84.65 0.46 0.90 16 7 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 8 Si 0.95 43.98 27.47 68.60 1.88 45.86 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.24 -9.58 6.54 99.48 0.65 -8.92 16 12 C 0.52 20.02 6.28 85.07 0.53 20.56 16 13 O -0.60 -27.83 12.24 -4.59 -0.06 -27.89 16 14 C -0.28 -7.50 9.03 22.47 0.20 -7.30 16 15 C 0.05 1.14 9.79 22.52 0.22 1.36 16 16 C -0.05 -1.29 5.98 38.98 0.23 -1.05 16 17 C 0.02 0.53 11.91 84.42 1.01 1.54 16 18 N -0.54 -16.16 11.19 -198.38 -2.22 -18.39 16 19 C 0.19 5.39 12.99 180.29 2.34 7.73 16 20 N -0.53 -16.07 4.58 -191.13 -0.88 -16.94 16 21 H 0.42 13.52 6.24 -92.71 -0.58 12.94 16 22 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.06 1.87 8.07 -2.38 -0.02 1.85 16 24 H 0.09 1.98 5.99 -2.39 -0.01 1.97 16 25 H 0.05 2.14 7.13 -2.39 -0.02 2.13 16 26 H 0.02 1.12 6.85 -2.39 -0.02 1.11 16 27 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 28 H 0.17 3.22 6.03 -2.91 -0.02 3.20 16 29 H 0.19 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.21 3.78 8.06 -2.91 -0.02 3.76 16 31 H 0.23 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -80.86 267.84 4.01 -76.85 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.52 Total: 19.72 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.92 Total: 6.67 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -5.26 Total: -121.20 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.06 Total: -27.89 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Total: -80.86 4.01 -76.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493734346.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.561 kcal (2) G-P(sol) polarization free energy of solvation -80.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds