Wall clock time and date at job start Sun Mar 29 2020 22:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99759 * 2 1 4 4 C 1.50699 * 109.46928 * 90.00349 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46922 * 90.00621 * 8 6 4 10 10 H 1.48500 * 109.47411 * 210.00442 * 8 6 4 11 11 H 1.48494 * 109.47378 * 330.00637 * 8 6 4 12 12 C 1.34771 * 120.00157 * 180.02562 * 2 1 3 13 13 O 1.21777 * 119.99994 * 179.97438 * 12 2 1 14 14 C 1.41585 * 119.99972 * 359.97438 * 12 2 1 15 15 C 1.35533 * 120.00110 * 180.02562 * 14 12 2 16 16 C 1.41795 * 120.00064 * 180.02562 * 15 14 12 17 17 C 1.38061 * 126.94543 * 180.02562 * 16 15 14 18 18 N 1.33321 * 107.57714 * 179.97438 * 17 16 15 19 19 C 1.30826 * 109.78719 * 0.02562 * 18 17 16 20 20 N 1.34665 * 109.43311 * 359.72208 * 19 18 17 21 21 H 0.97003 * 126.45535 * 180.26837 * 20 19 18 22 22 H 1.08995 * 109.47445 * 89.99576 * 1 2 3 23 23 H 1.09001 * 109.47057 * 210.00204 * 1 2 3 24 24 H 1.08999 * 109.47333 * 329.99764 * 1 2 3 25 25 H 1.09004 * 109.47073 * 210.00177 * 3 2 1 26 26 H 1.09000 * 109.47212 * 330.00260 * 3 2 1 27 27 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 28 28 H 1.07998 * 119.99596 * 0.02562 * 14 12 2 29 29 H 1.08003 * 119.99832 * 359.97438 * 15 14 12 30 30 H 1.07998 * 126.21482 * 0.03542 * 17 16 15 31 31 H 1.08000 * 125.27996 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0981 1.0957 2.2417 6 6 3.1268 2.8774 1.6728 7 7 3.5541 3.6177 0.6732 8 14 3.4376 3.4170 3.4340 9 1 4.7322 2.8595 3.9013 10 1 3.4860 4.8999 3.4962 11 1 2.3418 2.9205 4.3045 12 6 2.1389 -1.1671 -0.0005 13 8 3.3566 -1.1671 -0.0010 14 6 1.4310 -2.3933 -0.0005 15 6 2.1086 -3.5671 -0.0005 16 6 1.3997 -4.7951 -0.0011 17 6 1.9403 -6.0654 -0.0007 18 7 0.9286 -6.9336 -0.0009 19 6 -0.2092 -6.2878 -0.0019 20 7 0.0281 -4.9622 0.0037 21 1 -0.6384 -4.2574 0.0079 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8899 0.5139 25 1 3.1499 1.1385 -0.5139 26 1 1.6083 2.0285 -0.5138 27 1 4.0309 4.4435 0.8505 28 1 0.3510 -2.3933 -0.0005 29 1 3.1887 -3.5670 -0.0009 30 1 2.9920 -6.3113 0.0007 31 1 -1.1869 -6.7466 -0.0020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493734350.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:31 Heat of formation + Delta-G solvation = 18.590079 kcal Electronic energy + Delta-G solvation = -15644.491290 eV Core-core repulsion = 12926.584683 eV Total energy + Delta-G solvation = -2717.906607 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.94637 -40.76940 -36.69235 -35.33759 -34.68156 -33.24407 -30.68453 -29.29028 -27.39790 -25.86511 -23.91486 -22.38548 -21.67588 -19.65202 -19.04643 -18.69286 -17.80051 -17.11241 -16.33798 -16.12295 -15.89004 -15.26582 -15.11207 -14.46570 -14.33083 -14.20703 -13.80044 -13.52244 -13.35445 -12.98117 -12.72218 -12.48013 -12.20599 -11.75168 -11.61548 -11.18790 -10.97780 -10.71251 -10.66126 -9.47684 -8.88381 -8.22953 -6.38942 -0.37814 1.35815 1.39361 1.47091 1.49546 2.12994 2.14913 2.32056 2.51942 2.62979 3.05821 3.72012 3.88520 3.94249 4.17262 4.38475 4.48397 4.53600 4.67061 4.72354 4.89811 4.95664 5.17129 5.33129 5.36639 5.55042 5.61100 5.84231 6.04735 6.45386 6.68623 6.78220 6.98574 7.26807 7.47010 8.83674 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.045118 B = 0.004770 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.451145 B = 5869.112953 C = 5983.162495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.609 5.609 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.262 1.262 12 C 0.527 3.473 13 O -0.610 6.610 14 C -0.234 4.234 15 C 0.032 3.968 16 C -0.039 4.039 17 C 0.024 3.976 18 N -0.538 5.538 19 C 0.223 3.777 20 N -0.548 5.548 21 H 0.438 0.562 22 H 0.071 0.929 23 H 0.095 0.905 24 H 0.066 0.934 25 H -0.003 1.003 26 H 0.024 0.976 27 H 0.268 0.732 28 H 0.154 0.846 29 H 0.137 0.863 30 H 0.189 0.811 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.943 -16.312 -1.062 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.339 5.339 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.186 1.186 12 C 0.321 3.679 13 O -0.495 6.495 14 C -0.256 4.256 15 C 0.010 3.990 16 C -0.152 4.152 17 C -0.129 4.129 18 N -0.257 5.257 19 C -0.060 4.060 20 N -0.152 5.152 21 H 0.280 0.720 22 H 0.089 0.911 23 H 0.113 0.887 24 H 0.085 0.915 25 H 0.015 0.985 26 H 0.042 0.958 27 H 0.077 0.923 28 H 0.171 0.829 29 H 0.155 0.845 30 H 0.206 0.794 31 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -12.225 -16.955 -1.113 20.932 hybrid contribution 0.235 2.009 0.629 2.118 sum -11.990 -14.946 -0.484 19.167 Atomic orbital electron populations 1.21967 0.77895 1.03975 1.02574 1.48104 1.08430 1.06512 1.70816 1.18765 0.91138 0.80402 0.96108 1.21700 1.37008 1.06590 0.92962 0.92931 1.25881 0.94812 0.96359 1.02123 1.70049 1.38841 1.14854 1.33116 0.85394 0.78669 0.77591 0.79019 1.20620 1.19800 1.18575 1.17698 0.87315 0.85713 0.77197 1.90762 1.16316 1.88589 1.53808 1.21902 1.01271 0.91079 1.11307 1.20642 1.00136 0.88932 0.89264 1.19004 0.84084 0.95490 1.16644 1.23409 1.00059 0.87303 1.02105 1.70132 0.98937 1.34924 1.21678 1.25989 1.00800 0.79282 0.99955 1.43441 1.06761 1.10354 1.54610 0.72032 0.91079 0.88698 0.91501 0.98465 0.95761 0.92329 0.82868 0.84541 0.79417 0.72839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.27 10.12 127.77 1.29 3.57 16 2 N -0.61 -26.48 2.86 -861.85 -2.46 -28.95 16 3 C 0.26 14.27 5.16 85.63 0.44 14.71 16 4 C -0.54 -32.01 9.39 25.60 0.24 -31.77 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.42 5.46 84.65 0.46 0.88 16 7 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 8 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 9 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 12 C 0.53 22.74 7.44 85.07 0.63 23.37 16 13 O -0.61 -32.76 15.69 -4.60 -0.07 -32.84 16 14 C -0.23 -6.81 8.67 22.47 0.19 -6.61 16 15 C 0.03 0.85 9.43 22.52 0.21 1.06 16 16 C -0.04 -0.81 6.79 38.98 0.26 -0.55 16 17 C 0.02 0.52 11.91 84.42 1.01 1.53 16 18 N -0.54 -11.23 11.19 -198.38 -2.22 -13.45 16 19 C 0.22 2.89 12.99 180.29 2.34 5.23 16 20 N -0.55 -7.49 6.02 -191.13 -1.15 -8.64 16 21 H 0.44 3.25 8.01 -92.71 -0.74 2.51 16 22 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.09 1.99 6.08 -2.39 -0.01 1.98 16 24 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 25 H 0.00 -0.18 7.42 -2.38 -0.02 -0.20 16 26 H 0.02 1.35 8.07 -2.39 -0.02 1.33 16 27 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.15 3.02 5.07 -2.91 -0.01 3.00 16 29 H 0.14 4.07 7.46 -2.91 -0.02 4.05 16 30 H 0.19 3.43 8.06 -2.91 -0.02 3.40 16 31 H 0.26 0.65 8.06 -2.91 -0.02 0.63 16 Total: -1.00 -82.33 277.82 3.91 -78.42 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 0.41 Total: 3.31 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 7.09 Total: 11.42 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -5.55 Total: -107.67 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.07 Total: -32.84 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -82.33 3.91 -78.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493734350.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.009 kcal (2) G-P(sol) polarization free energy of solvation -82.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds