Wall clock time and date at job start Sun Mar 29 2020 21:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28649 * 2 1 4 4 O 1.21294 * 110.24985 * 179.73386 * 3 2 1 5 5 C 1.33643 * 109.81343 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55336 * 180.02562 * 5 4 3 7 7 C 1.55689 * 119.16046 * 97.44421 * 6 5 4 8 8 C 1.56000 * 81.45775 * 198.63079 * 7 6 5 9 9 C 1.54876 * 119.92926 * 359.96857 * 6 5 4 10 10 C 1.56749 * 106.37195 * 301.72605 * 8 7 6 11 11 N 1.49815 * 117.54665 * 232.75323 * 6 5 4 12 12 C 1.36941 * 129.44657 * 358.82095 * 11 6 5 13 13 H 1.07994 * 119.99493 * 359.97438 * 12 11 6 14 14 C 1.38803 * 119.99857 * 179.97438 * 12 11 6 15 15 N 1.31622 * 120.00566 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99789 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47061 * 89.99925 * 16 14 12 18 18 H 1.48505 * 109.46962 * 209.99824 * 16 14 12 19 19 H 1.48500 * 109.47133 * 329.99900 * 16 14 12 20 20 N 1.31132 * 106.89433 * 359.97438 * 5 4 3 21 21 H 1.08998 * 109.47436 * 90.02501 * 1 2 3 22 22 H 1.08999 * 109.47253 * 210.02767 * 1 2 3 23 23 H 1.09011 * 109.46848 * 330.02641 * 1 2 3 24 24 H 1.08998 * 114.53618 * 311.77022 * 7 6 5 25 25 H 1.08994 * 114.53985 * 85.49367 * 7 6 5 26 26 H 1.09001 * 120.19653 * 162.63466 * 8 7 6 27 27 H 1.08995 * 114.45681 * 274.07615 * 9 6 5 28 28 H 1.09003 * 114.45079 * 47.48809 * 9 6 5 29 29 H 1.08993 * 111.44256 * 158.68492 * 10 8 7 30 30 H 1.08999 * 111.44184 * 283.67413 * 10 8 7 31 31 H 0.96999 * 120.00344 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4418 0.7124 0.0053 5 6 3.5299 -0.6211 0.0098 6 6 4.7969 -1.4369 0.0176 7 6 5.3339 -1.9914 1.3696 8 6 6.6444 -2.1135 0.5322 9 6 6.1732 -0.7267 0.0202 10 6 6.3047 -3.0372 -0.6878 11 7 4.9485 -2.4913 -1.0359 12 6 4.0803 -2.8607 -2.0284 13 1 3.1275 -2.3618 -2.1255 14 6 4.4251 -3.8763 -2.9095 15 7 5.5867 -4.4840 -2.7914 16 14 3.2405 -4.3807 -4.2630 17 1 3.5065 -3.5726 -5.4801 18 1 3.4284 -5.8206 -4.5739 19 1 1.8450 -4.1499 -3.8108 20 7 2.3030 -1.0840 0.0074 21 1 -0.3634 -0.0004 -1.0276 22 1 -0.3634 -0.8897 0.5143 23 1 -0.3633 0.8903 0.5135 24 1 5.3777 -1.2576 2.1744 25 1 4.8999 -2.9443 1.6724 26 1 7.6057 -2.2308 1.0325 27 1 6.5456 -0.4607 -0.9690 28 1 6.2639 0.0787 0.7491 29 1 7.0079 -2.8894 -1.5074 30 1 6.2555 -4.0852 -0.3926 31 1 5.8274 -5.1939 -3.4070 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527537047.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:23 Heat of formation + Delta-G solvation = 161.340618 kcal Electronic energy + Delta-G solvation = -16911.012005 eV Core-core repulsion = 14199.295526 eV Total energy + Delta-G solvation = -2711.716479 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.08357 -40.03784 -35.58917 -33.08995 -32.54955 -29.68119 -28.94382 -27.24889 -24.82292 -24.59467 -23.25524 -21.83434 -19.79407 -18.82787 -17.64019 -17.56270 -16.29363 -15.14118 -14.78338 -13.98465 -13.72768 -13.39020 -13.23069 -12.90012 -12.50071 -12.17045 -12.00472 -11.44790 -11.08200 -11.03378 -10.95402 -10.71499 -10.59173 -10.43719 -10.26858 -10.13306 -9.70508 -9.50871 -9.30576 -8.76845 -7.00274 -5.83520 -3.14828 1.57953 2.69161 3.17193 3.38247 3.43346 3.46225 4.05592 4.34693 4.43828 4.94285 5.01858 5.06392 5.18505 5.34562 5.51154 5.57929 5.63632 5.66932 5.87871 6.09912 6.11696 6.28204 6.35329 6.41943 6.49683 6.66256 6.70943 7.25562 7.28663 7.59198 7.92772 8.63419 9.02021 9.62984 10.33858 11.33258 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.020008 B = 0.011602 C = 0.007903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.106450 B = 2412.852516 C = 3542.159527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.159 3.841 3 N -0.401 5.401 4 O 0.069 5.931 5 C 0.241 3.759 6 C 0.228 3.772 7 C -0.142 4.142 8 C -0.144 4.144 9 C -0.157 4.157 10 C 0.192 3.808 11 N -0.565 5.565 12 C -0.218 4.218 13 H 0.083 0.917 14 C -0.003 4.003 15 N -0.921 5.921 16 Si 0.914 3.086 17 H -0.288 1.288 18 H -0.288 1.288 19 H -0.280 1.280 20 N -0.464 5.464 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.085 6.752 7.285 10.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.114 4.114 3 N -0.112 5.112 4 O 0.013 5.987 5 C 0.020 3.980 6 C 0.135 3.865 7 C -0.183 4.183 8 C -0.163 4.163 9 C -0.197 4.197 10 C 0.069 3.931 11 N -0.291 5.291 12 C -0.345 4.345 13 H 0.100 0.900 14 C -0.200 4.200 15 N -0.568 5.568 16 Si 0.744 3.256 17 H -0.215 1.215 18 H -0.214 1.214 19 H -0.205 1.205 20 N -0.197 5.197 21 H 0.104 0.896 22 H 0.108 0.892 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.090 0.910 26 H 0.124 0.876 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.804 7.051 6.990 10.317 hybrid contribution -0.518 -0.363 -0.762 0.991 sum -3.322 6.687 6.227 9.723 Atomic orbital electron populations 1.20057 0.83482 1.04065 1.04017 1.25950 1.00489 0.84054 1.00883 1.74542 0.89645 1.24090 1.22954 1.85242 1.22136 1.25158 1.66149 1.28018 0.95870 0.80933 0.93175 1.20550 0.82914 0.89872 0.93134 1.24445 0.97453 1.01255 0.95161 1.24644 0.96739 0.96867 0.98021 1.24449 0.97150 0.96436 1.01672 1.22224 0.85213 0.94598 0.91046 1.45737 1.17164 1.37279 1.28908 1.19021 0.97268 1.15068 1.03183 0.89955 1.24740 0.97475 0.98304 0.99479 1.69841 1.20874 1.26850 1.39207 0.86081 0.80227 0.77681 0.81618 1.21515 1.21434 1.20515 1.72010 0.99667 1.28275 1.19753 0.89627 0.89241 0.90001 0.89723 0.90983 0.87556 0.90694 0.90247 0.91877 0.92714 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.51 36.01 0.38 -0.37 16 2 C 0.16 2.91 8.22 -156.38 -1.28 1.63 16 3 N -0.40 -7.58 12.16 30.90 0.38 -7.20 16 4 O 0.07 1.34 11.27 18.10 0.20 1.55 16 5 C 0.24 5.01 7.41 -13.06 -0.10 4.91 16 6 C 0.23 4.71 2.43 -134.91 -0.33 4.38 16 7 C -0.14 -2.46 7.66 -30.36 -0.23 -2.69 16 8 C -0.14 -2.49 6.40 -92.06 -0.59 -3.07 16 9 C -0.16 -2.73 7.28 -31.26 -0.23 -2.96 16 10 C 0.19 4.35 5.58 0.10 0.00 4.35 16 11 N -0.57 -14.17 3.50 -155.96 -0.55 -14.72 16 12 C -0.22 -6.10 10.10 -15.06 -0.15 -6.25 16 13 H 0.08 2.34 7.13 -52.49 -0.37 1.97 16 14 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 15 N -0.92 -26.50 11.16 55.49 0.62 -25.88 16 16 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 N -0.46 -9.89 11.04 -9.87 -0.11 -10.00 16 21 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 23 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 24 H 0.08 1.22 7.86 -51.93 -0.41 0.81 16 25 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 26 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 28 H 0.08 1.15 7.86 -51.93 -0.41 0.75 16 29 H 0.06 1.53 7.82 -51.93 -0.41 1.13 16 30 H 0.05 1.34 7.90 -51.93 -0.41 0.93 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 266.80 15.07 4.02 4.02 Total: -1.00 -30.99 266.80 -6.76 -37.76 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -3.68 Total: -2.65 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.63 Total: -0.27 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.34 Total: -57.80 kcal Atomic # 8 Polarization: 1.34 SS G_CDS: 0.20 Total: 1.55 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.99 -6.76 -37.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527537047.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.097 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds