Wall clock time and date at job start Sun Mar 29 2020 21:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28649 * 2 1 4 4 O 1.21294 * 110.24985 * 179.73386 * 3 2 1 5 5 C 1.33643 * 109.81343 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55336 * 180.02562 * 5 4 3 7 7 C 1.55689 * 119.16046 * 97.44421 * 6 5 4 8 8 C 1.56000 * 81.45775 * 198.63079 * 7 6 5 9 9 C 1.54876 * 119.92926 * 359.96857 * 6 5 4 10 10 C 1.56749 * 106.37195 * 301.72605 * 8 7 6 11 11 N 1.49815 * 117.54665 * 232.75323 * 6 5 4 12 12 C 1.36941 * 129.44657 * 358.82095 * 11 6 5 13 13 H 1.07994 * 119.99493 * 359.97438 * 12 11 6 14 14 C 1.38803 * 119.99857 * 179.97438 * 12 11 6 15 15 N 1.31622 * 120.00566 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99789 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47061 * 89.99925 * 16 14 12 18 18 H 1.48505 * 109.46962 * 209.99824 * 16 14 12 19 19 H 1.48500 * 109.47133 * 329.99900 * 16 14 12 20 20 N 1.31132 * 106.89433 * 359.97438 * 5 4 3 21 21 H 1.08998 * 109.47436 * 90.02501 * 1 2 3 22 22 H 1.08999 * 109.47253 * 210.02767 * 1 2 3 23 23 H 1.09011 * 109.46848 * 330.02641 * 1 2 3 24 24 H 1.08998 * 114.53618 * 311.77022 * 7 6 5 25 25 H 1.08994 * 114.53985 * 85.49367 * 7 6 5 26 26 H 1.09001 * 120.19653 * 162.63466 * 8 7 6 27 27 H 1.08995 * 114.45681 * 274.07615 * 9 6 5 28 28 H 1.09003 * 114.45079 * 47.48809 * 9 6 5 29 29 H 1.08993 * 111.44256 * 158.68492 * 10 8 7 30 30 H 1.08999 * 111.44184 * 283.67413 * 10 8 7 31 31 H 0.96999 * 120.00344 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4418 0.7124 0.0053 5 6 3.5299 -0.6211 0.0098 6 6 4.7969 -1.4369 0.0176 7 6 5.3339 -1.9914 1.3696 8 6 6.6444 -2.1135 0.5322 9 6 6.1732 -0.7267 0.0202 10 6 6.3047 -3.0372 -0.6878 11 7 4.9485 -2.4913 -1.0359 12 6 4.0803 -2.8607 -2.0284 13 1 3.1275 -2.3618 -2.1255 14 6 4.4251 -3.8763 -2.9095 15 7 5.5867 -4.4840 -2.7914 16 14 3.2405 -4.3807 -4.2630 17 1 3.5065 -3.5726 -5.4801 18 1 3.4284 -5.8206 -4.5739 19 1 1.8450 -4.1499 -3.8108 20 7 2.3030 -1.0840 0.0074 21 1 -0.3634 -0.0004 -1.0276 22 1 -0.3634 -0.8897 0.5143 23 1 -0.3633 0.8903 0.5135 24 1 5.3777 -1.2576 2.1744 25 1 4.8999 -2.9443 1.6724 26 1 7.6057 -2.2308 1.0325 27 1 6.5456 -0.4607 -0.9690 28 1 6.2639 0.0787 0.7491 29 1 7.0079 -2.8894 -1.5074 30 1 6.2555 -4.0852 -0.3926 31 1 5.8274 -5.1939 -3.4070 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527537047.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:22 Heat of formation + Delta-G solvation = 140.070904 kcal Electronic energy + Delta-G solvation = -16911.934329 eV Core-core repulsion = 14199.295526 eV Total energy + Delta-G solvation = -2712.638803 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.55988 -41.58688 -37.05380 -35.08705 -33.99582 -31.60925 -30.15534 -28.88892 -26.65844 -26.05864 -24.83158 -23.35457 -21.48907 -20.32528 -19.32362 -19.08937 -17.92702 -17.01812 -16.43556 -15.75979 -15.03735 -14.87440 -14.48426 -14.41167 -14.11512 -13.70556 -13.41210 -13.11760 -12.93007 -12.82105 -12.45601 -12.35478 -12.13893 -12.10967 -11.97508 -11.79990 -11.51019 -11.06198 -10.86242 -10.72931 -8.96180 -7.94561 -5.25366 0.06031 1.21734 1.40209 1.41613 1.50470 1.64641 2.42155 2.71443 3.03297 3.27757 3.36412 3.50264 3.58281 3.90121 3.96073 4.11603 4.49774 4.54961 4.67622 4.72694 4.84640 4.91468 4.97684 5.06586 5.09222 5.18462 5.26623 5.40787 5.43404 5.65058 5.94039 6.93699 7.14131 7.56630 8.34343 9.21230 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.020008 B = 0.011602 C = 0.007903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.106450 B = 2412.852516 C = 3542.159527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.158 3.842 3 N -0.408 5.408 4 O 0.068 5.932 5 C 0.233 3.767 6 C 0.195 3.805 7 C -0.122 4.122 8 C -0.120 4.120 9 C -0.138 4.138 10 C 0.188 3.812 11 N -0.596 5.596 12 C -0.220 4.220 13 H 0.069 0.931 14 C -0.058 4.058 15 N -0.946 5.946 16 Si 0.970 3.030 17 H -0.286 1.286 18 H -0.287 1.287 19 H -0.277 1.277 20 N -0.498 5.498 21 H 0.097 0.903 22 H 0.099 0.901 23 H 0.108 0.892 24 H 0.129 0.871 25 H 0.056 0.944 26 H 0.152 0.848 27 H 0.057 0.943 28 H 0.123 0.877 29 H 0.036 0.964 30 H 0.025 0.975 31 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.387 8.165 8.798 12.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.114 4.114 3 N -0.120 5.120 4 O 0.014 5.986 5 C 0.012 3.988 6 C 0.104 3.896 7 C -0.162 4.162 8 C -0.138 4.138 9 C -0.178 4.178 10 C 0.066 3.934 11 N -0.323 5.323 12 C -0.349 4.349 13 H 0.087 0.913 14 C -0.252 4.252 15 N -0.594 5.594 16 Si 0.798 3.202 17 H -0.213 1.213 18 H -0.213 1.213 19 H -0.203 1.203 20 N -0.232 5.232 21 H 0.115 0.885 22 H 0.118 0.882 23 H 0.127 0.873 24 H 0.147 0.853 25 H 0.075 0.925 26 H 0.169 0.831 27 H 0.075 0.925 28 H 0.141 0.859 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.096 8.502 8.535 12.438 hybrid contribution -0.491 -0.733 -1.202 1.491 sum -3.587 7.769 7.333 11.269 Atomic orbital electron populations 1.20338 0.80061 1.05938 1.05287 1.26815 1.02375 0.82972 0.99244 1.74519 0.89550 1.24274 1.23706 1.85221 1.22544 1.24483 1.66304 1.28095 0.95962 0.81448 0.93291 1.21037 0.84489 0.90052 0.93997 1.24483 0.95988 1.01445 0.94310 1.24525 0.98696 0.94794 0.95796 1.24424 0.93778 0.97445 1.02114 1.22055 0.84131 0.94435 0.92823 1.45886 1.17651 1.38815 1.29930 1.19101 0.97148 1.14548 1.04091 0.91292 1.25445 0.99082 0.98929 1.01739 1.69999 1.22154 1.27329 1.39941 0.85211 0.78508 0.77192 0.79268 1.21266 1.21276 1.20271 1.72020 1.00537 1.29884 1.20787 0.88483 0.88184 0.87316 0.85282 0.92513 0.83089 0.92456 0.85866 0.94601 0.95659 0.94006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.37 10.51 71.24 0.75 -0.62 16 2 C 0.16 5.58 8.22 138.46 1.14 6.71 16 3 N -0.41 -14.78 12.16 -60.33 -0.73 -15.51 16 4 O 0.07 2.55 11.27 74.84 0.84 3.39 16 5 C 0.23 9.46 7.41 88.38 0.65 10.11 16 6 C 0.19 7.82 2.43 -0.24 0.00 7.82 16 7 C -0.12 -3.85 7.66 28.25 0.22 -3.64 16 8 C -0.12 -3.80 6.40 -11.73 -0.08 -3.88 16 9 C -0.14 -4.41 7.28 27.66 0.20 -4.21 16 10 C 0.19 8.69 5.58 86.95 0.49 9.17 16 11 N -0.60 -30.39 3.50 -647.35 -2.26 -32.65 16 12 C -0.22 -12.65 10.10 84.03 0.85 -11.80 16 13 H 0.07 4.04 7.13 -2.91 -0.02 4.02 16 14 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 15 N -0.95 -56.31 11.16 21.65 0.24 -56.07 16 16 Si 0.97 47.14 29.55 68.60 2.03 49.16 16 17 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 18 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 19 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 20 N -0.50 -20.94 11.04 -303.20 -3.35 -24.29 16 21 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 22 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 24 H 0.13 3.01 7.86 -2.39 -0.02 3.00 16 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.15 3.53 8.14 -2.39 -0.02 3.51 16 27 H 0.06 2.05 8.11 -2.39 -0.02 2.03 16 28 H 0.12 2.93 7.86 -2.39 -0.02 2.91 16 29 H 0.04 1.81 7.82 -2.39 -0.02 1.79 16 30 H 0.03 1.28 7.90 -2.39 -0.02 1.26 16 31 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -69.86 266.80 2.59 -67.27 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: 1.14 Total: 1.94 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 4.68 Total: 6.76 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -6.10 Total: -128.52 kcal Atomic # 8 Polarization: 2.55 SS G_CDS: 0.84 Total: 3.39 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -69.86 2.59 -67.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527537047.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.338 kcal (2) G-P(sol) polarization free energy of solvation -69.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds