Wall clock time and date at job start Sun Mar 29 2020 21:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46800 * 2 1 4 4 C 1.38498 * 120.01059 * 125.00333 * 3 2 1 5 5 C 1.40166 * 117.80715 * 179.69999 * 4 3 2 6 6 C 1.47981 * 121.15624 * 180.24972 * 5 4 3 7 7 O 1.21562 * 120.00355 * 173.90953 * 6 5 4 8 8 N 1.34779 * 119.99989 * 353.91739 * 6 5 4 9 9 C 1.36791 * 120.00259 * 179.97438 * 8 6 5 10 10 H 1.08001 * 119.99828 * 359.97438 * 9 8 6 11 11 C 1.39099 * 119.99952 * 179.97438 * 9 8 6 12 12 N 1.31330 * 119.99914 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00418 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47154 * 89.99633 * 13 11 9 15 15 H 1.48498 * 109.47078 * 210.00096 * 13 11 9 16 16 H 1.48509 * 109.46718 * 329.99931 * 13 11 9 17 17 C 1.39862 * 117.69293 * 0.27546 * 5 4 3 18 18 C 1.50697 * 120.18371 * 180.02562 * 17 5 4 19 19 N 1.31868 * 119.63933 * 359.97438 * 17 5 4 20 20 N 1.28275 * 122.34133 * 0.02562 * 19 17 5 21 21 H 1.09006 * 109.46955 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47186 * 299.99796 * 1 2 3 23 23 H 1.08993 * 109.47564 * 60.00343 * 1 2 3 24 24 H 1.09004 * 109.46811 * 240.00008 * 2 1 3 25 25 H 1.09000 * 109.47234 * 120.00243 * 2 1 3 26 26 H 1.07995 * 121.09872 * 359.97228 * 4 3 2 27 27 H 0.97007 * 119.99499 * 359.97438 * 8 6 5 28 28 H 0.97004 * 120.00156 * 180.02562 * 12 11 9 29 29 H 1.08997 * 109.47680 * 83.65020 * 18 17 5 30 30 H 1.08999 * 109.47384 * 203.65319 * 18 17 5 31 31 H 1.08998 * 109.46901 * 323.65302 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9117 1.8446 0.9824 5 6 3.3544 3.1737 0.9345 6 6 4.2987 3.7029 1.9435 7 8 4.7550 4.8229 1.8205 8 7 4.6529 2.9432 2.9989 9 6 5.5262 3.4322 3.9313 10 1 5.9321 4.4269 3.8216 11 6 5.8913 2.6482 5.0208 12 7 6.7293 3.1179 5.9163 13 14 5.1897 0.9273 5.2102 14 1 6.0778 -0.0473 4.5272 15 1 5.0972 0.5865 6.6526 16 1 3.8362 0.8748 4.6014 17 6 2.8723 3.9825 -0.0997 18 6 3.3119 5.4201 -0.2049 19 7 2.0317 3.4800 -0.9828 20 7 1.6307 2.2626 -0.9330 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.2489 1.1720 1.7571 27 1 4.2885 2.0495 3.0972 28 1 6.9842 2.5710 6.6759 29 1 4.2681 5.4705 -0.7255 30 1 2.5656 5.9886 -0.7599 31 1 3.4198 5.8411 0.7947 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546086143.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:19 Heat of formation + Delta-G solvation = 11.637081 kcal Electronic energy + Delta-G solvation = -16174.417921 eV Core-core repulsion = 13456.209810 eV Total energy + Delta-G solvation = -2718.208112 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.92745 -38.42886 -35.21579 -34.32793 -33.05115 -32.16244 -31.14930 -27.64796 -26.04527 -24.60469 -23.18357 -22.01142 -19.82322 -18.93797 -17.15576 -16.41432 -15.38424 -15.32531 -15.13369 -14.67186 -14.20640 -13.77861 -13.49549 -13.21326 -12.83296 -12.67572 -12.57391 -12.12487 -11.80489 -11.69788 -11.46060 -11.23081 -10.86438 -10.55031 -10.32699 -10.01647 -9.71623 -9.67098 -9.17983 -8.59332 -8.51075 -6.70278 -4.10185 0.71692 1.13070 2.80185 2.85193 2.94119 3.38883 3.78917 4.05096 4.12992 4.17456 4.56427 4.75819 4.90711 4.97801 5.07235 5.19850 5.30492 5.43538 5.63450 5.75730 5.82101 5.89915 6.03829 6.12644 6.18371 6.28082 6.45684 6.80021 7.17642 7.79528 8.21665 8.57686 8.98548 9.03128 9.48779 10.40020 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.008518 C = 0.006356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.956690 B = 3286.332249 C = 4404.426730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.066 4.066 3 C 0.060 3.940 4 C -0.118 4.118 5 C -0.092 4.092 6 C 0.467 3.533 7 O -0.565 6.565 8 N -0.555 5.555 9 C -0.295 4.295 10 H 0.129 0.871 11 C 0.046 3.954 12 N -0.850 5.850 13 Si 0.877 3.123 14 H -0.264 1.264 15 H -0.269 1.269 16 H -0.266 1.266 17 C 0.105 3.895 18 C -0.098 4.098 19 N -0.249 5.249 20 N -0.247 5.247 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.142 0.858 27 H 0.372 0.628 28 H 0.282 0.718 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.439 -7.304 -6.866 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.084 4.084 4 C -0.148 4.148 5 C -0.107 4.107 6 C 0.255 3.745 7 O -0.450 6.450 8 N -0.191 5.191 9 C -0.424 4.424 10 H 0.147 0.853 11 C -0.161 4.161 12 N -0.487 5.487 13 Si 0.702 3.298 14 H -0.189 1.189 15 H -0.193 1.193 16 H -0.192 1.192 17 C -0.041 4.041 18 C -0.156 4.156 19 N -0.090 5.090 20 N -0.090 5.090 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.160 0.840 27 H 0.206 0.794 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.909 -6.326 -8.062 13.579 hybrid contribution 0.512 -1.756 1.723 2.513 sum -8.397 -8.081 -6.339 13.266 Atomic orbital electron populations 1.21694 0.93943 1.01771 1.02849 1.20406 0.97128 0.89561 1.03425 1.22645 0.94894 0.98252 0.92596 1.22417 0.97125 0.95871 0.99417 1.21428 0.97875 0.93982 0.97375 1.17161 0.86733 0.87072 0.83528 1.90610 1.58102 1.19121 1.77186 1.42229 1.40078 1.15153 1.21597 1.19635 1.18863 1.03812 1.00071 0.85326 1.25191 0.96505 0.98953 0.95501 1.69573 1.30206 1.37600 1.11349 0.86682 0.79535 0.83895 0.79650 1.18850 1.19328 1.19156 1.23031 0.92311 0.98794 0.89972 1.20888 1.00883 0.88119 1.05704 1.72896 1.09478 1.05510 1.21151 1.72657 1.18776 0.97758 1.19794 0.92182 0.92817 0.91422 0.89668 0.90160 0.83986 0.79405 0.90757 0.89993 0.91640 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.77 37.16 0.36 -1.12 16 2 C -0.07 -0.73 6.35 -27.88 -0.18 -0.91 16 3 C 0.06 0.92 6.26 -82.46 -0.52 0.41 16 4 C -0.12 -1.93 9.29 -38.76 -0.36 -2.29 16 5 C -0.09 -1.76 5.92 -104.57 -0.62 -2.38 16 6 C 0.47 10.53 7.68 -12.27 -0.09 10.43 16 7 O -0.57 -14.24 13.10 5.31 0.07 -14.17 16 8 N -0.55 -12.61 5.04 -11.80 -0.06 -12.67 16 9 C -0.29 -7.73 10.16 -15.02 -0.15 -7.88 16 10 H 0.13 3.83 7.38 -52.49 -0.39 3.44 16 11 C 0.05 1.16 5.50 -17.45 -0.10 1.06 16 12 N -0.85 -22.76 13.95 55.50 0.77 -21.98 16 13 Si 0.88 17.60 27.74 -169.99 -4.72 12.89 16 14 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 15 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 16 H -0.27 -4.84 6.52 56.52 0.37 -4.48 16 17 C 0.10 1.97 6.91 -81.97 -0.57 1.40 16 18 C -0.10 -1.68 8.97 36.00 0.32 -1.35 16 19 N -0.25 -4.62 11.42 33.83 0.39 -4.24 16 20 N -0.25 -4.30 11.03 33.57 0.37 -3.93 16 21 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.75 7.96 -51.93 -0.41 0.34 16 24 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 26 H 0.14 2.00 6.60 -52.49 -0.35 1.65 16 27 H 0.37 7.39 3.98 -40.82 -0.16 7.23 16 28 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.11 2.05 5.94 -51.93 -0.31 1.74 16 LS Contribution 268.62 15.07 4.05 4.05 Total: -1.00 -29.14 268.62 -4.33 -33.47 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -3.31 Total: 9.21 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.89 Total: -2.63 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 1.47 Total: -42.82 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.07 Total: -14.17 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -4.72 Total: 12.89 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.14 -4.33 -33.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546086143.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.111 kcal (2) G-P(sol) polarization free energy of solvation -29.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds