Wall clock time and date at job start Sun Mar 29 2020 21:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.46800 * 2 1 4 4 C 1.38498 * 120.01059 * 125.00333 * 3 2 1 5 5 C 1.40166 * 117.80715 * 179.69999 * 4 3 2 6 6 C 1.47981 * 121.15624 * 180.24972 * 5 4 3 7 7 O 1.21562 * 120.00355 * 173.90953 * 6 5 4 8 8 N 1.34779 * 119.99989 * 353.91739 * 6 5 4 9 9 C 1.36791 * 120.00259 * 179.97438 * 8 6 5 10 10 H 1.08001 * 119.99828 * 359.97438 * 9 8 6 11 11 C 1.39099 * 119.99952 * 179.97438 * 9 8 6 12 12 N 1.31330 * 119.99914 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00418 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47154 * 89.99633 * 13 11 9 15 15 H 1.48498 * 109.47078 * 210.00096 * 13 11 9 16 16 H 1.48509 * 109.46718 * 329.99931 * 13 11 9 17 17 C 1.39862 * 117.69293 * 0.27546 * 5 4 3 18 18 C 1.50697 * 120.18371 * 180.02562 * 17 5 4 19 19 N 1.31868 * 119.63933 * 359.97438 * 17 5 4 20 20 N 1.28275 * 122.34133 * 0.02562 * 19 17 5 21 21 H 1.09006 * 109.46955 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47186 * 299.99796 * 1 2 3 23 23 H 1.08993 * 109.47564 * 60.00343 * 1 2 3 24 24 H 1.09004 * 109.46811 * 240.00008 * 2 1 3 25 25 H 1.09000 * 109.47234 * 120.00243 * 2 1 3 26 26 H 1.07995 * 121.09872 * 359.97228 * 4 3 2 27 27 H 0.97007 * 119.99499 * 359.97438 * 8 6 5 28 28 H 0.97004 * 120.00156 * 180.02562 * 12 11 9 29 29 H 1.08997 * 109.47680 * 83.65020 * 18 17 5 30 30 H 1.08999 * 109.47384 * 203.65319 * 18 17 5 31 31 H 1.08998 * 109.46901 * 323.65302 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9117 1.8446 0.9824 5 6 3.3544 3.1737 0.9345 6 6 4.2987 3.7029 1.9435 7 8 4.7550 4.8229 1.8205 8 7 4.6529 2.9432 2.9989 9 6 5.5262 3.4322 3.9313 10 1 5.9321 4.4269 3.8216 11 6 5.8913 2.6482 5.0208 12 7 6.7293 3.1179 5.9163 13 14 5.1897 0.9273 5.2102 14 1 6.0778 -0.0473 4.5272 15 1 5.0972 0.5865 6.6526 16 1 3.8362 0.8748 4.6014 17 6 2.8723 3.9825 -0.0997 18 6 3.3119 5.4201 -0.2049 19 7 2.0317 3.4800 -0.9828 20 7 1.6307 2.2626 -0.9330 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.2489 1.1720 1.7571 27 1 4.2885 2.0495 3.0972 28 1 6.9842 2.5710 6.6759 29 1 4.2681 5.4705 -0.7255 30 1 2.5656 5.9886 -0.7599 31 1 3.4198 5.8411 0.7947 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546086143.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:19 Heat of formation + Delta-G solvation = -8.808411 kcal Electronic energy + Delta-G solvation = -16175.304505 eV Core-core repulsion = 13456.209810 eV Total energy + Delta-G solvation = -2719.094695 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.36332 -40.20899 -36.63510 -35.91411 -34.61801 -33.90135 -32.38951 -28.99153 -27.69621 -26.13657 -24.39572 -23.32660 -21.57960 -20.67652 -18.58268 -18.06161 -17.01506 -16.72251 -16.63488 -15.99387 -15.52073 -15.33227 -14.88121 -14.80078 -14.40183 -14.26243 -13.88335 -13.27480 -13.09721 -13.01271 -12.69992 -12.53566 -12.13506 -12.04875 -11.78258 -11.68116 -11.24702 -11.16543 -10.54093 -10.40977 -10.28892 -8.56275 -6.12818 -0.72012 -0.21792 1.24605 1.31438 1.39818 1.80793 2.13359 2.46305 2.50199 2.89944 3.08867 3.25504 3.37412 3.65458 3.79932 4.06759 4.20189 4.39792 4.50794 4.59841 4.69725 4.72441 4.94579 5.06939 5.10913 5.20707 5.34120 5.38406 5.44835 5.80534 6.37432 6.67025 7.14179 7.59499 7.68043 8.58935 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.008518 C = 0.006356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.956690 B = 3286.332249 C = 4404.426730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C 0.067 3.933 4 C -0.095 4.095 5 C -0.115 4.115 6 C 0.476 3.524 7 O -0.597 6.597 8 N -0.555 5.555 9 C -0.329 4.329 10 H 0.069 0.931 11 C -0.003 4.003 12 N -0.908 5.908 13 Si 0.951 3.049 14 H -0.248 1.248 15 H -0.267 1.267 16 H -0.229 1.229 17 C 0.097 3.903 18 C -0.094 4.094 19 N -0.260 5.260 20 N -0.252 5.252 21 H 0.087 0.913 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.174 0.826 27 H 0.389 0.611 28 H 0.286 0.714 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.684 -10.945 -7.938 17.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.078 4.078 4 C -0.125 4.125 5 C -0.129 4.129 6 C 0.264 3.736 7 O -0.483 6.483 8 N -0.193 5.193 9 C -0.458 4.458 10 H 0.087 0.913 11 C -0.206 4.206 12 N -0.546 5.546 13 Si 0.770 3.230 14 H -0.172 1.172 15 H -0.192 1.192 16 H -0.152 1.152 17 C -0.048 4.048 18 C -0.152 4.152 19 N -0.101 5.101 20 N -0.094 5.094 21 H 0.105 0.895 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.121 0.879 25 H 0.128 0.872 26 H 0.192 0.808 27 H 0.226 0.774 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.169 -9.955 -9.159 17.542 hybrid contribution 1.080 -0.573 1.819 2.192 sum -10.089 -10.528 -7.340 16.325 Atomic orbital electron populations 1.21698 0.93297 1.03302 1.01860 1.20666 0.97567 0.86601 1.05741 1.23344 0.93592 0.99891 0.90961 1.22845 0.95382 0.94602 0.99660 1.21172 0.98663 0.95859 0.97227 1.17760 0.85891 0.86436 0.83478 1.90601 1.58972 1.20810 1.77905 1.41887 1.40337 1.15951 1.21160 1.19123 1.21638 1.02476 1.02593 0.91259 1.26168 0.96206 1.04122 0.94077 1.69725 1.32394 1.40051 1.12466 0.85564 0.80599 0.76830 0.80041 1.17210 1.19200 1.15227 1.23176 0.92396 0.99258 0.90004 1.20804 1.01682 0.88009 1.04657 1.72931 1.09582 1.06381 1.21232 1.72626 1.18602 0.97610 1.20532 0.89465 0.93430 0.92843 0.87936 0.87235 0.80840 0.77420 0.90361 0.89968 0.89322 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.77 71.98 0.70 -1.57 16 2 C -0.07 -1.11 6.35 29.85 0.19 -0.92 16 3 C 0.07 1.76 6.26 42.61 0.27 2.02 16 4 C -0.09 -2.71 9.29 22.80 0.21 -2.50 16 5 C -0.11 -4.23 5.92 -19.83 -0.12 -4.35 16 6 C 0.48 21.64 7.68 86.83 0.67 22.30 16 7 O -0.60 -31.42 13.10 -3.91 -0.05 -31.47 16 8 N -0.55 -25.12 5.04 -309.53 -1.56 -26.68 16 9 C -0.33 -18.06 10.16 84.13 0.85 -17.21 16 10 H 0.07 4.51 7.38 -2.91 -0.02 4.49 16 11 C 0.00 -0.17 5.50 84.97 0.47 0.29 16 12 N -0.91 -50.80 13.95 21.69 0.30 -50.50 16 13 Si 0.95 34.71 27.74 68.60 1.90 36.61 16 14 H -0.25 -8.45 7.11 99.48 0.71 -7.75 16 15 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 16 H -0.23 -6.87 6.52 99.48 0.65 -6.22 16 17 C 0.10 3.54 6.91 42.95 0.30 3.84 16 18 C -0.09 -3.21 8.97 71.24 0.64 -2.57 16 19 N -0.26 -9.14 11.42 -46.90 -0.54 -9.68 16 20 N -0.25 -7.98 11.03 -47.70 -0.53 -8.50 16 21 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 22 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.05 1.00 7.96 -2.39 -0.02 0.98 16 24 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 25 H 0.11 1.26 7.92 -2.39 -0.02 1.25 16 26 H 0.17 3.85 6.60 -2.91 -0.02 3.84 16 27 H 0.39 14.39 3.98 -92.70 -0.37 14.02 16 28 H 0.29 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.09 3.36 5.94 -2.39 -0.01 3.35 16 Total: -1.00 -68.17 268.62 4.44 -63.73 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.73 Total: 27.16 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 4.18 Total: -0.67 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -2.32 Total: -95.35 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.05 Total: -31.47 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 1.90 Total: 36.61 kcal Total: -68.17 4.44 -63.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546086143.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.918 kcal (2) G-P(sol) polarization free energy of solvation -68.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds