Wall clock time and date at job start Sun Mar 29 2020 22:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47299 * 2 1 4 4 C 1.36782 * 119.99652 * 82.75127 * 3 2 1 5 5 H 1.07999 * 119.99501 * 171.21843 * 4 3 2 6 6 C 1.39107 * 119.99961 * 351.22000 * 4 3 2 7 7 N 1.31318 * 120.00309 * 1.94002 * 6 4 3 8 8 Si 1.86802 * 119.99880 * 181.93659 * 6 4 3 9 9 H 1.48505 * 109.47048 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47154 * 120.00244 * 8 6 4 11 11 H 1.48499 * 109.47455 * 240.00158 * 8 6 4 12 12 C 1.34777 * 120.00349 * 262.75183 * 3 2 1 13 13 O 1.21574 * 119.99896 * 184.54348 * 12 3 2 14 14 C 1.47981 * 119.99953 * 4.82542 * 12 3 2 15 15 N 1.33102 * 120.10366 * 284.64490 * 14 12 3 16 16 C 1.31776 * 119.91651 * 180.02562 * 15 14 12 17 17 C 1.38762 * 120.13441 * 359.97438 * 16 15 14 18 18 N 1.32136 * 120.20949 * 0.02562 * 17 16 15 19 19 C 1.32079 * 120.08452 * 359.70645 * 18 17 16 20 20 C 1.50699 * 120.06962 * 180.29997 * 19 18 17 21 21 H 1.08996 * 109.47420 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46869 * 299.99773 * 1 2 3 23 23 H 1.08997 * 109.47231 * 59.99683 * 1 2 3 24 24 H 1.09000 * 109.46869 * 240.00226 * 2 1 3 25 25 H 1.08997 * 109.47231 * 120.00317 * 2 1 3 26 26 H 0.97001 * 120.00366 * 180.02562 * 7 6 4 27 27 H 1.07998 * 119.93640 * 180.02562 * 16 15 14 28 28 H 1.07995 * 119.89281 * 180.02562 * 17 16 15 29 29 H 1.08999 * 109.47188 * 274.68569 * 20 19 18 30 30 H 1.09000 * 109.47008 * 34.68677 * 20 19 18 31 31 H 1.08998 * 109.47213 * 154.68156 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1054 2.0757 1.1751 5 1 2.5952 3.0380 1.1986 6 6 1.5631 1.5426 2.3400 7 7 1.0014 0.3558 2.3195 8 14 1.6341 2.5149 3.9334 9 1 2.3133 3.8131 3.6912 10 1 0.2546 2.7624 4.4241 11 1 2.3904 1.7424 4.9515 12 6 2.3819 1.9675 -1.1578 13 8 2.8644 3.0833 -1.1489 14 6 2.1879 1.2555 -2.4405 15 7 3.0045 0.2616 -2.7825 16 6 2.8287 -0.3696 -3.9259 17 6 1.7939 -0.0004 -4.7734 18 7 0.9802 0.9855 -4.4390 19 6 1.1454 1.6204 -3.2927 20 6 0.2130 2.7403 -2.9086 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.6229 -0.0158 3.1316 27 1 3.4908 -1.1763 -4.2035 28 1 1.6531 -0.5206 -5.7093 29 1 0.5644 3.6731 -3.3497 30 1 -0.7897 2.5201 -3.2750 31 1 0.1899 2.8377 -1.8232 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596917245.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:59 Heat of formation + Delta-G solvation = 34.144755 kcal Electronic energy + Delta-G solvation = -16962.045990 eV Core-core repulsion = 14244.813884 eV Total energy + Delta-G solvation = -2717.232106 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.85029 -38.30685 -35.27035 -34.21720 -32.50468 -31.55731 -29.49099 -27.87240 -25.84080 -24.15213 -22.52799 -22.07766 -19.92064 -17.45811 -17.15723 -16.58991 -15.84213 -15.20087 -14.67012 -14.14259 -13.94760 -13.50196 -12.91647 -12.80313 -12.52960 -12.37831 -11.99976 -11.71585 -11.34952 -11.27831 -11.13005 -10.81508 -10.72771 -10.36219 -10.16908 -10.01382 -9.16323 -8.94152 -8.78700 -8.38863 -7.84525 -6.30974 -3.93713 1.00774 1.42594 3.06279 3.20254 3.27273 3.56432 3.91218 4.02406 4.28657 4.48385 4.79039 4.87353 5.08728 5.24366 5.46639 5.59436 5.69580 5.93719 6.07989 6.24456 6.32439 6.59873 6.68376 6.70738 6.83499 7.30834 7.50900 7.55794 7.72046 7.95969 8.07441 8.40241 9.03298 9.29080 9.81597 10.54440 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.038293 B = 0.008275 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.021339 B = 3383.034800 C = 3526.266038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.117 3.883 3 N -0.416 5.416 4 C -0.293 4.293 5 H 0.109 0.891 6 C 0.024 3.976 7 N -0.870 5.870 8 Si 0.935 3.065 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.487 3.513 13 O -0.582 6.582 14 C 0.090 3.910 15 N -0.417 5.417 16 C 0.037 3.963 17 C 0.043 3.957 18 N -0.443 5.443 19 C 0.106 3.894 20 C -0.099 4.099 21 H 0.035 0.965 22 H 0.095 0.905 23 H 0.012 0.988 24 H 0.030 0.970 25 H 0.121 0.879 26 H 0.267 0.733 27 H 0.168 0.832 28 H 0.166 0.834 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.074 -3.466 -7.347 8.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.006 4.006 3 N -0.132 5.132 4 C -0.421 4.421 5 H 0.126 0.874 6 C -0.178 4.178 7 N -0.511 5.511 8 Si 0.762 3.238 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.206 1.206 12 C 0.272 3.728 13 O -0.467 6.467 14 C -0.053 4.053 15 N -0.133 5.133 16 C -0.124 4.124 17 C -0.118 4.118 18 N -0.158 5.158 19 C -0.034 4.034 20 C -0.157 4.157 21 H 0.054 0.946 22 H 0.113 0.887 23 H 0.031 0.969 24 H 0.048 0.952 25 H 0.138 0.862 26 H 0.078 0.922 27 H 0.185 0.815 28 H 0.183 0.817 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.930 -3.036 -7.121 7.978 hybrid contribution 0.020 -0.052 0.505 0.509 sum -1.910 -3.087 -6.616 7.546 Atomic orbital electron populations 1.22227 0.96665 0.99684 1.01246 1.21825 0.94595 0.82844 1.01345 1.43720 1.52879 1.11764 1.04810 1.19938 1.34222 1.03839 0.84125 0.87355 1.25379 0.95937 0.96526 0.99952 1.70136 1.37247 1.15506 1.28256 0.85697 0.78074 0.79628 0.80407 1.19106 1.20544 1.20603 1.17186 0.87358 0.86311 0.81915 1.90644 1.50270 1.20094 1.85666 1.22498 0.92049 0.92824 0.97892 1.68653 1.24378 1.04517 1.15802 1.23771 0.97846 0.99688 0.91094 1.23773 0.92690 0.94655 1.00658 1.68253 1.25880 1.06117 1.15569 1.22206 0.94643 0.96596 0.89972 1.20698 0.97122 0.94514 1.03317 0.94633 0.88702 0.96865 0.95199 0.86161 0.92177 0.81537 0.81655 0.89860 0.90473 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.45 37.16 0.35 -2.73 16 2 C 0.12 2.76 5.31 -4.04 -0.02 2.74 16 3 N -0.42 -10.78 2.63 -115.85 -0.30 -11.09 16 4 C -0.29 -7.92 9.51 -15.02 -0.14 -8.06 16 5 H 0.11 3.06 7.18 -52.49 -0.38 2.69 16 6 C 0.02 0.60 5.24 -17.45 -0.09 0.51 16 7 N -0.87 -21.39 7.17 55.50 0.40 -20.99 16 8 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 9 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 10 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 12 C 0.49 12.48 5.66 -12.27 -0.07 12.41 16 13 O -0.58 -16.55 16.70 5.30 0.09 -16.47 16 14 C 0.09 1.98 5.06 -82.85 -0.42 1.56 16 15 N -0.42 -8.41 9.41 -9.63 -0.09 -8.50 16 16 C 0.04 0.57 11.22 -17.38 -0.20 0.37 16 17 C 0.04 0.61 11.23 -17.23 -0.19 0.42 16 18 N -0.44 -7.64 10.42 -8.93 -0.09 -7.73 16 19 C 0.11 2.07 6.82 -82.01 -0.56 1.51 16 20 C -0.10 -1.74 9.89 36.00 0.36 -1.38 16 21 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.09 2.27 5.84 -51.93 -0.30 1.97 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 24 H 0.03 0.68 5.94 -51.93 -0.31 0.37 16 25 H 0.12 3.03 5.90 -51.93 -0.31 2.73 16 26 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 27 H 0.17 1.79 8.06 -52.49 -0.42 1.36 16 28 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.09 1.71 6.92 -51.93 -0.36 1.35 16 LS Contribution 265.36 15.07 4.00 4.00 Total: -1.00 -30.25 265.36 -5.34 -35.59 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.33 Total: 2.96 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -0.99 Total: 7.35 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.09 Total: -48.31 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.09 Total: -16.47 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.25 -5.34 -35.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917245.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.735 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds