Wall clock time and date at job start Sun Mar 29 2020 22:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47299 * 2 1 4 4 C 1.36782 * 119.99652 * 82.75127 * 3 2 1 5 5 H 1.07999 * 119.99501 * 171.21843 * 4 3 2 6 6 C 1.39107 * 119.99961 * 351.22000 * 4 3 2 7 7 N 1.31318 * 120.00309 * 1.94002 * 6 4 3 8 8 Si 1.86802 * 119.99880 * 181.93659 * 6 4 3 9 9 H 1.48505 * 109.47048 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47154 * 120.00244 * 8 6 4 11 11 H 1.48499 * 109.47455 * 240.00158 * 8 6 4 12 12 C 1.34777 * 120.00349 * 262.75183 * 3 2 1 13 13 O 1.21574 * 119.99896 * 184.54348 * 12 3 2 14 14 C 1.47981 * 119.99953 * 4.82542 * 12 3 2 15 15 N 1.33102 * 120.10366 * 284.64490 * 14 12 3 16 16 C 1.31776 * 119.91651 * 180.02562 * 15 14 12 17 17 C 1.38762 * 120.13441 * 359.97438 * 16 15 14 18 18 N 1.32136 * 120.20949 * 0.02562 * 17 16 15 19 19 C 1.32079 * 120.08452 * 359.70645 * 18 17 16 20 20 C 1.50699 * 120.06962 * 180.29997 * 19 18 17 21 21 H 1.08996 * 109.47420 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46869 * 299.99773 * 1 2 3 23 23 H 1.08997 * 109.47231 * 59.99683 * 1 2 3 24 24 H 1.09000 * 109.46869 * 240.00226 * 2 1 3 25 25 H 1.08997 * 109.47231 * 120.00317 * 2 1 3 26 26 H 0.97001 * 120.00366 * 180.02562 * 7 6 4 27 27 H 1.07998 * 119.93640 * 180.02562 * 16 15 14 28 28 H 1.07995 * 119.89281 * 180.02562 * 17 16 15 29 29 H 1.08999 * 109.47188 * 274.68569 * 20 19 18 30 30 H 1.09000 * 109.47008 * 34.68677 * 20 19 18 31 31 H 1.08998 * 109.47213 * 154.68156 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1054 2.0757 1.1751 5 1 2.5952 3.0380 1.1986 6 6 1.5631 1.5426 2.3400 7 7 1.0014 0.3558 2.3195 8 14 1.6341 2.5149 3.9334 9 1 2.3133 3.8131 3.6912 10 1 0.2546 2.7624 4.4241 11 1 2.3904 1.7424 4.9515 12 6 2.3819 1.9675 -1.1578 13 8 2.8644 3.0833 -1.1489 14 6 2.1879 1.2555 -2.4405 15 7 3.0045 0.2616 -2.7825 16 6 2.8287 -0.3696 -3.9259 17 6 1.7939 -0.0004 -4.7734 18 7 0.9802 0.9855 -4.4390 19 6 1.1454 1.6204 -3.2927 20 6 0.2130 2.7403 -2.9086 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 0.6229 -0.0158 3.1316 27 1 3.4908 -1.1763 -4.2035 28 1 1.6531 -0.5206 -5.7093 29 1 0.5644 3.6731 -3.3497 30 1 -0.7897 2.5201 -3.2750 31 1 0.1899 2.8377 -1.8232 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596917245.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:59 Heat of formation + Delta-G solvation = 13.191478 kcal Electronic energy + Delta-G solvation = -16962.954592 eV Core-core repulsion = 14244.813884 eV Total energy + Delta-G solvation = -2718.140708 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.27393 -40.15027 -37.24031 -35.59923 -34.08918 -33.34677 -31.36621 -29.27080 -27.56163 -25.81283 -23.94058 -23.87324 -21.65996 -19.07981 -18.86854 -18.39221 -17.24583 -16.82465 -16.26237 -15.71020 -15.58876 -15.34146 -14.75900 -14.55448 -13.91056 -13.76361 -13.60561 -13.45235 -13.11918 -12.87164 -12.68232 -12.64053 -12.31072 -12.10073 -12.03490 -11.80738 -10.93813 -10.85057 -10.14624 -9.98974 -9.78352 -8.24261 -5.96770 -0.33886 0.08302 1.32607 1.43596 1.56854 1.77897 2.21013 2.60842 2.74250 3.02097 3.12636 3.37122 3.57847 3.76546 4.14575 4.30272 4.38774 4.44880 4.56761 4.69909 4.81144 4.87116 4.97530 5.05966 5.33676 5.39277 5.52784 5.84643 5.97538 6.23029 6.44171 6.73830 7.05851 7.33968 7.87341 8.59892 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.038293 B = 0.008275 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.021339 B = 3383.034800 C = 3526.266038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.124 3.876 3 N -0.425 5.425 4 C -0.339 4.339 5 H 0.080 0.920 6 C 0.000 4.000 7 N -0.871 5.871 8 Si 0.998 3.002 9 H -0.277 1.277 10 H -0.267 1.267 11 H -0.269 1.269 12 C 0.479 3.521 13 O -0.629 6.629 14 C 0.052 3.948 15 N -0.449 5.449 16 C 0.046 3.954 17 C 0.070 3.930 18 N -0.448 5.448 19 C 0.095 3.905 20 C -0.094 4.094 21 H 0.057 0.943 22 H 0.074 0.926 23 H 0.015 0.985 24 H 0.039 0.961 25 H 0.103 0.897 26 H 0.275 0.725 27 H 0.217 0.783 28 H 0.225 0.775 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.792 -5.469 -8.820 10.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.002 3.998 3 N -0.140 5.140 4 C -0.467 4.467 5 H 0.098 0.902 6 C -0.201 4.201 7 N -0.511 5.511 8 Si 0.821 3.179 9 H -0.202 1.202 10 H -0.192 1.192 11 H -0.194 1.194 12 C 0.267 3.733 13 O -0.518 6.518 14 C -0.088 4.088 15 N -0.166 5.166 16 C -0.117 4.117 17 C -0.093 4.093 18 N -0.164 5.164 19 C -0.043 4.043 20 C -0.152 4.152 21 H 0.076 0.924 22 H 0.092 0.908 23 H 0.034 0.966 24 H 0.058 0.942 25 H 0.121 0.879 26 H 0.086 0.914 27 H 0.234 0.766 28 H 0.242 0.758 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.688 -5.047 -8.561 10.295 hybrid contribution 0.281 0.401 0.807 0.944 sum -2.407 -4.646 -7.754 9.355 Atomic orbital electron populations 1.22033 0.95377 1.00738 1.00275 1.21754 0.95535 0.81726 1.00804 1.43899 1.52790 1.12444 1.04870 1.19840 1.37055 1.03913 0.85904 0.90178 1.26066 0.94732 0.97373 1.01976 1.70205 1.35874 1.15640 1.29340 0.84806 0.78498 0.77897 0.76710 1.20219 1.19212 1.19380 1.17772 0.86183 0.86125 0.83255 1.90570 1.52121 1.22255 1.86851 1.21842 0.94724 0.95160 0.97083 1.68517 1.24772 1.04778 1.18516 1.24664 0.98392 0.99471 0.89151 1.24789 0.90315 0.92450 1.01703 1.68382 1.26756 1.07023 1.14235 1.22208 0.94314 0.97205 0.90526 1.20644 0.98476 0.94756 1.01325 0.92364 0.90790 0.96586 0.94242 0.87914 0.91354 0.76626 0.75817 0.89355 0.87907 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 9.45 71.98 0.68 -4.84 16 2 C 0.12 5.97 5.31 86.38 0.46 6.42 16 3 N -0.42 -23.03 2.63 -638.71 -1.68 -24.71 16 4 C -0.34 -19.30 9.51 84.13 0.80 -18.50 16 5 H 0.08 4.89 7.18 -2.91 -0.02 4.87 16 6 C 0.00 0.02 5.24 84.98 0.45 0.47 16 7 N -0.87 -42.93 7.17 21.69 0.16 -42.77 16 8 Si 1.00 41.26 29.55 68.60 2.03 43.29 16 9 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 10 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 11 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 12 C 0.48 25.85 5.66 86.83 0.49 26.34 16 13 O -0.63 -38.30 16.70 -3.95 -0.07 -38.36 16 14 C 0.05 2.29 5.06 41.84 0.21 2.50 16 15 N -0.45 -17.59 9.41 -184.37 -1.73 -19.33 16 16 C 0.05 1.21 11.22 84.83 0.95 2.16 16 17 C 0.07 1.63 11.23 84.77 0.95 2.58 16 18 N -0.45 -14.10 10.42 -182.17 -1.90 -16.00 16 19 C 0.10 3.66 6.82 42.83 0.29 3.95 16 20 C -0.09 -3.37 9.89 71.24 0.70 -2.67 16 21 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 22 H 0.07 3.56 5.84 -2.39 -0.01 3.54 16 23 H 0.02 0.65 8.14 -2.39 -0.02 0.64 16 24 H 0.04 1.79 5.94 -2.39 -0.01 1.78 16 25 H 0.10 5.26 5.90 -2.39 -0.01 5.25 16 26 H 0.28 12.56 8.31 -92.71 -0.77 11.79 16 27 H 0.22 3.35 8.06 -2.91 -0.02 3.33 16 28 H 0.23 2.56 8.06 -2.91 -0.02 2.53 16 29 H 0.09 2.98 8.14 -2.39 -0.02 2.97 16 30 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.05 2.30 6.92 -2.39 -0.02 2.28 16 Total: -1.00 -70.08 265.36 3.94 -66.14 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 1.15 Total: 13.32 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 5.99 Total: 18.42 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -5.16 Total: -102.81 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.07 Total: -38.36 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -70.08 3.94 -66.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917245.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.333 kcal (2) G-P(sol) polarization free energy of solvation -70.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds