Wall clock time and date at job start Sun Mar 29 2020 21:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32114 * 120.06259 * 2 1 4 4 C 1.32109 * 120.07652 * 180.29668 * 3 2 1 5 5 C 1.38782 * 120.18749 * 359.70801 * 4 3 2 6 6 N 1.31775 * 120.12126 * 0.02717 * 5 4 3 7 7 C 1.33029 * 119.92690 * 359.97138 * 6 5 4 8 8 C 1.48148 * 120.09236 * 180.02562 * 7 6 5 9 9 O 1.21516 * 120.00342 * 174.49338 * 8 7 6 10 10 N 1.34786 * 120.00032 * 354.48950 * 8 7 6 11 11 C 1.46496 * 120.00093 * 180.27859 * 10 8 7 12 12 H 1.09005 * 109.46700 * 324.72588 * 11 10 8 13 13 C 1.52999 * 109.47269 * 84.72057 * 11 10 8 14 14 C 1.50696 * 109.47185 * 204.72817 * 11 10 8 15 15 H 1.08003 * 119.99796 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00105 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99782 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99842 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47322 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46923 * 120.00473 * 18 16 14 21 21 H 1.48503 * 109.46687 * 239.99951 * 18 16 14 22 22 H 1.08994 * 109.47292 * 263.53064 * 1 2 3 23 23 H 1.08997 * 109.47449 * 23.53564 * 1 2 3 24 24 H 1.09004 * 109.46778 * 143.53347 * 1 2 3 25 25 H 1.07994 * 119.90680 * 179.73273 * 4 3 2 26 26 H 1.07993 * 119.93661 * 179.97438 * 5 4 3 27 27 H 0.97003 * 119.99893 * 0.02562 * 10 8 7 28 28 H 1.09005 * 109.46884 * 180.02562 * 13 11 10 29 29 H 1.09001 * 109.47511 * 300.00132 * 13 11 10 30 30 H 1.09003 * 109.46625 * 60.00105 * 13 11 10 31 31 H 0.97002 * 119.99174 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1688 1.1434 0.0000 4 6 3.4899 1.1437 -0.0059 5 6 4.1880 -0.0557 -0.0060 6 7 3.5356 -1.2006 -0.0008 7 6 2.2053 -1.2064 0.0052 8 6 1.4681 -2.4914 0.0117 9 8 0.2577 -2.4970 0.1181 10 7 2.1401 -3.6544 -0.1006 11 6 1.4106 -4.9248 -0.1003 12 1 0.5551 -4.8524 0.5713 13 6 0.9220 -5.2327 -1.5171 14 6 2.3241 -6.0285 0.3671 15 1 3.3460 -5.8059 0.6366 16 6 1.8552 -7.3225 0.4508 17 7 0.6107 -7.5934 0.1231 18 14 2.9878 -8.6906 1.0295 19 1 4.3278 -8.1282 1.3346 20 1 2.4231 -9.3168 2.2518 21 1 3.1128 -9.7147 -0.0387 22 1 -0.3633 -0.1158 1.0211 23 1 -0.3634 0.9421 -0.4103 24 1 -0.3633 -0.8265 -0.6108 25 1 4.0281 2.0800 -0.0103 26 1 5.2679 -0.0507 -0.0113 27 1 3.1064 -3.6500 -0.1852 28 1 0.3789 -6.1778 -1.5167 29 1 0.2613 -4.4345 -1.8552 30 1 1.7775 -5.3051 -2.1887 31 1 0.2808 -8.5037 0.1823 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596994908.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:37 Heat of formation + Delta-G solvation = 8.178355 kcal Electronic energy + Delta-G solvation = -16167.542254 eV Core-core repulsion = 13449.184160 eV Total energy + Delta-G solvation = -2718.358093 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.21778 -38.65055 -35.12527 -34.49698 -32.57551 -32.33111 -29.20255 -27.75752 -25.39846 -25.19386 -22.86633 -21.56594 -19.68018 -18.12158 -17.61974 -16.22996 -15.85336 -15.39415 -15.19438 -14.77471 -14.06515 -13.74580 -13.13677 -12.73417 -12.65764 -12.42121 -12.26600 -11.76347 -11.60255 -11.13137 -11.07940 -10.93884 -10.70396 -10.31722 -10.24628 -9.58288 -9.21471 -9.06847 -8.84298 -8.56061 -7.95595 -6.13683 -4.22480 0.49247 1.04170 3.14508 3.24122 3.31853 3.35231 3.68628 3.95355 4.09492 4.20014 4.35411 4.48357 4.91054 5.07125 5.19095 5.34372 5.48893 5.85248 5.95600 6.13471 6.53288 6.79406 6.93772 7.10356 7.14617 7.38122 7.49908 7.64776 7.72176 7.88891 8.11520 8.59835 8.73143 9.00724 9.44613 10.92506 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.040525 B = 0.006121 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.764068 B = 4573.580493 C = 5070.407072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.133 3.867 3 N -0.448 5.448 4 C 0.066 3.934 5 C 0.036 3.964 6 N -0.408 5.408 7 C 0.038 3.962 8 C 0.556 3.444 9 O -0.538 6.538 10 N -0.681 5.681 11 C 0.261 3.739 12 H 0.052 0.948 13 C -0.147 4.147 14 C -0.533 4.533 15 H 0.063 0.937 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.111 0.889 25 H 0.171 0.829 26 H 0.173 0.827 27 H 0.399 0.601 28 H 0.092 0.908 29 H 0.016 0.984 30 H 0.027 0.973 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.451 13.630 -1.120 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.007 4.007 3 N -0.163 5.163 4 C -0.096 4.096 5 C -0.127 4.127 6 N -0.125 5.125 7 C -0.104 4.104 8 C 0.338 3.662 9 O -0.417 6.417 10 N -0.327 5.327 11 C 0.160 3.840 12 H 0.070 0.930 13 C -0.206 4.206 14 C -0.571 4.571 15 H 0.081 0.919 16 C -0.137 4.137 17 N -0.521 5.521 18 Si 0.730 3.270 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.208 1.208 22 H 0.105 0.895 23 H 0.086 0.914 24 H 0.129 0.871 25 H 0.188 0.812 26 H 0.190 0.810 27 H 0.233 0.767 28 H 0.111 0.889 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.415 13.361 -1.053 14.111 hybrid contribution 1.375 -0.641 0.273 1.541 sum 5.790 12.720 -0.780 13.998 Atomic orbital electron populations 1.21059 0.86386 1.04044 1.04755 1.22414 0.99117 0.87742 0.91388 1.68436 1.08838 1.28838 1.10222 1.23993 0.90951 0.99936 0.94672 1.23794 1.01990 0.88558 0.98315 1.68399 1.07914 1.30060 1.06163 1.22476 0.90571 0.96455 1.00876 1.17632 0.86773 0.82869 0.78945 1.90697 1.12855 1.86376 1.51727 1.46486 1.11317 1.06393 1.68534 1.18882 0.92804 0.77769 0.94553 0.92998 1.22087 0.99149 1.02044 0.97305 1.21248 0.98021 0.92155 1.45698 0.91870 1.24883 0.95281 0.98593 0.94926 1.69913 1.14567 1.20347 1.47306 0.86370 0.80657 0.81567 0.78391 1.19693 1.20855 1.20847 0.89541 0.91407 0.87102 0.81150 0.80974 0.76678 0.88926 0.96527 0.95349 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 8.88 36.00 0.32 -1.22 16 2 C 0.13 2.10 6.82 -82.04 -0.56 1.54 16 3 N -0.45 -6.26 10.42 -8.95 -0.09 -6.35 16 4 C 0.07 0.71 11.23 -17.23 -0.19 0.52 16 5 C 0.04 0.41 11.23 -17.37 -0.20 0.21 16 6 N -0.41 -6.37 9.73 -9.61 -0.09 -6.46 16 7 C 0.04 0.66 6.75 -82.85 -0.56 0.10 16 8 C 0.56 11.55 7.71 -12.19 -0.09 11.46 16 9 O -0.54 -12.16 13.00 5.35 0.07 -12.09 16 10 N -0.68 -14.91 5.06 -55.78 -0.28 -15.20 16 11 C 0.26 6.68 2.56 -69.09 -0.18 6.50 16 12 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 13 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 14 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 15 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 16 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 17 N -0.88 -24.75 11.32 55.43 0.63 -24.12 16 18 Si 0.90 20.70 29.54 -169.99 -5.02 15.67 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.11 1.82 5.85 -51.93 -0.30 1.52 16 25 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 26 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.40 8.12 7.90 -40.82 -0.32 7.80 16 28 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 270.97 15.07 4.08 4.08 Total: -1.00 -30.28 270.97 -5.63 -35.91 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.41 Total: 5.59 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.51 Total: 2.96 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.16 Total: -52.13 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.28 -5.63 -35.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596994908.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.090 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds