Wall clock time and date at job start Sun Mar 29 2020 21:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32114 * 120.06259 * 2 1 4 4 C 1.32109 * 120.07652 * 180.29668 * 3 2 1 5 5 C 1.38782 * 120.18749 * 359.70801 * 4 3 2 6 6 N 1.31775 * 120.12126 * 0.02717 * 5 4 3 7 7 C 1.33029 * 119.92690 * 359.97138 * 6 5 4 8 8 C 1.48148 * 120.09236 * 180.02562 * 7 6 5 9 9 O 1.21516 * 120.00342 * 174.49338 * 8 7 6 10 10 N 1.34786 * 120.00032 * 354.48950 * 8 7 6 11 11 C 1.46496 * 120.00093 * 180.27859 * 10 8 7 12 12 H 1.09005 * 109.46700 * 324.72588 * 11 10 8 13 13 C 1.52999 * 109.47269 * 84.72057 * 11 10 8 14 14 C 1.50696 * 109.47185 * 204.72817 * 11 10 8 15 15 H 1.08003 * 119.99796 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00105 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99782 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99842 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47322 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46923 * 120.00473 * 18 16 14 21 21 H 1.48503 * 109.46687 * 239.99951 * 18 16 14 22 22 H 1.08994 * 109.47292 * 263.53064 * 1 2 3 23 23 H 1.08997 * 109.47449 * 23.53564 * 1 2 3 24 24 H 1.09004 * 109.46778 * 143.53347 * 1 2 3 25 25 H 1.07994 * 119.90680 * 179.73273 * 4 3 2 26 26 H 1.07993 * 119.93661 * 179.97438 * 5 4 3 27 27 H 0.97003 * 119.99893 * 0.02562 * 10 8 7 28 28 H 1.09005 * 109.46884 * 180.02562 * 13 11 10 29 29 H 1.09001 * 109.47511 * 300.00132 * 13 11 10 30 30 H 1.09003 * 109.46625 * 60.00105 * 13 11 10 31 31 H 0.97002 * 119.99174 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1688 1.1434 0.0000 4 6 3.4899 1.1437 -0.0059 5 6 4.1880 -0.0557 -0.0060 6 7 3.5356 -1.2006 -0.0008 7 6 2.2053 -1.2064 0.0052 8 6 1.4681 -2.4914 0.0117 9 8 0.2577 -2.4970 0.1181 10 7 2.1401 -3.6544 -0.1006 11 6 1.4106 -4.9248 -0.1003 12 1 0.5551 -4.8524 0.5713 13 6 0.9220 -5.2327 -1.5171 14 6 2.3241 -6.0285 0.3671 15 1 3.3460 -5.8059 0.6366 16 6 1.8552 -7.3225 0.4508 17 7 0.6107 -7.5934 0.1231 18 14 2.9878 -8.6906 1.0295 19 1 4.3278 -8.1282 1.3346 20 1 2.4231 -9.3168 2.2518 21 1 3.1128 -9.7147 -0.0387 22 1 -0.3633 -0.1158 1.0211 23 1 -0.3634 0.9421 -0.4103 24 1 -0.3633 -0.8265 -0.6108 25 1 4.0281 2.0800 -0.0103 26 1 5.2679 -0.0507 -0.0113 27 1 3.1064 -3.6500 -0.1852 28 1 0.3789 -6.1778 -1.5167 29 1 0.2613 -4.4345 -1.8552 30 1 1.7775 -5.3051 -2.1887 31 1 0.2808 -8.5037 0.1823 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596994908.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:37 Heat of formation + Delta-G solvation = -14.247002 kcal Electronic energy + Delta-G solvation = -16168.514690 eV Core-core repulsion = 13449.184160 eV Total energy + Delta-G solvation = -2719.330530 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.35710 -40.25483 -36.90588 -35.73565 -34.26467 -33.71170 -31.03268 -28.97247 -27.36523 -26.53896 -24.01258 -23.23432 -21.45375 -19.68736 -18.82962 -17.85488 -17.12223 -16.90604 -16.67708 -16.37717 -15.56660 -15.21201 -14.73222 -14.40384 -13.90539 -13.76588 -13.72639 -13.42626 -13.00878 -12.89332 -12.78702 -12.62241 -12.30570 -12.15744 -12.12006 -11.12516 -11.02070 -10.62006 -10.33102 -10.09292 -9.76379 -8.19192 -6.36404 -0.62439 -0.00139 1.44203 1.45008 1.57520 1.77096 2.20927 2.45275 2.72075 3.06932 3.08289 3.11540 3.37407 3.81494 4.05712 4.31710 4.42322 4.69733 4.72430 4.81142 4.90054 5.05092 5.10363 5.34340 5.45139 5.58231 5.65026 5.84643 6.06478 6.11973 6.59286 6.69347 6.87611 7.25175 7.40841 8.87465 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.040525 B = 0.006121 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.764068 B = 4573.580493 C = 5070.407072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.125 3.875 3 N -0.459 5.459 4 C 0.092 3.908 5 C 0.047 3.953 6 N -0.430 5.430 7 C 0.005 3.995 8 C 0.553 3.447 9 O -0.566 6.566 10 N -0.684 5.684 11 C 0.268 3.732 12 H 0.007 0.993 13 C -0.133 4.133 14 C -0.549 4.549 15 H 0.069 0.931 16 C 0.017 3.983 17 N -0.915 5.915 18 Si 0.974 3.026 19 H -0.263 1.263 20 H -0.281 1.281 21 H -0.276 1.276 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.226 0.774 26 H 0.221 0.779 27 H 0.407 0.593 28 H 0.071 0.929 29 H 0.016 0.984 30 H 0.037 0.963 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.254 15.358 -1.035 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.013 4.013 3 N -0.175 5.175 4 C -0.071 4.071 5 C -0.117 4.117 6 N -0.148 5.148 7 C -0.133 4.133 8 C 0.338 3.662 9 O -0.447 6.447 10 N -0.332 5.332 11 C 0.166 3.834 12 H 0.025 0.975 13 C -0.192 4.192 14 C -0.587 4.587 15 H 0.087 0.913 16 C -0.183 4.183 17 N -0.553 5.553 18 Si 0.798 3.202 19 H -0.187 1.187 20 H -0.207 1.207 21 H -0.202 1.202 22 H 0.100 0.900 23 H 0.108 0.892 24 H 0.104 0.896 25 H 0.243 0.757 26 H 0.237 0.763 27 H 0.242 0.758 28 H 0.090 0.910 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.186 15.090 -0.972 16.742 hybrid contribution 0.612 -0.975 0.246 1.178 sum 7.799 14.115 -0.725 16.143 Atomic orbital electron populations 1.20933 0.86589 1.04106 1.04130 1.22368 0.99346 0.87890 0.91683 1.68540 1.10584 1.27453 1.10924 1.24961 0.89844 1.01981 0.90360 1.24673 1.04016 0.87373 0.95669 1.68321 1.07008 1.32541 1.06882 1.21790 0.91589 0.94730 1.05241 1.18166 0.86705 0.83848 0.77528 1.90676 1.14311 1.87158 1.52553 1.46226 1.11455 1.05763 1.69721 1.18494 0.91731 0.79501 0.93723 0.97471 1.21902 0.99154 1.00844 0.97308 1.21526 0.98351 0.92771 1.46021 0.91296 1.25776 0.96714 1.01030 0.94826 1.70047 1.16297 1.21008 1.47983 0.85273 0.78849 0.78281 0.77795 1.18670 1.20736 1.20196 0.89965 0.89231 0.89563 0.75742 0.76256 0.75777 0.91039 0.96459 0.94357 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.00 8.88 71.24 0.63 -2.37 16 2 C 0.12 3.85 6.82 42.79 0.29 4.15 16 3 N -0.46 -11.49 10.42 -182.24 -1.90 -13.39 16 4 C 0.09 1.52 11.23 84.78 0.95 2.47 16 5 C 0.05 0.86 11.23 84.83 0.95 1.82 16 6 N -0.43 -12.62 9.73 -184.33 -1.79 -14.42 16 7 C 0.00 0.17 6.75 41.88 0.28 0.46 16 8 C 0.55 23.92 7.71 86.87 0.67 24.59 16 9 O -0.57 -27.19 13.00 -3.77 -0.05 -27.24 16 10 N -0.68 -30.97 5.06 -448.69 -2.27 -33.24 16 11 C 0.27 14.31 2.56 44.24 0.11 14.42 16 12 H 0.01 0.45 7.58 -2.38 -0.02 0.44 16 13 C -0.13 -6.86 9.26 71.98 0.67 -6.20 16 14 C -0.55 -29.83 8.73 25.60 0.22 -29.60 16 15 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 16 C 0.02 0.91 5.30 84.65 0.45 1.36 16 17 N -0.92 -52.51 11.32 21.45 0.24 -52.27 16 18 Si 0.97 42.44 29.54 68.60 2.03 44.47 16 19 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 22 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 23 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.09 3.01 5.85 -2.38 -0.01 3.00 16 25 H 0.23 1.25 8.06 -2.91 -0.02 1.22 16 26 H 0.22 1.84 8.06 -2.91 -0.02 1.82 16 27 H 0.41 16.83 7.90 -92.71 -0.73 16.09 16 28 H 0.07 3.98 6.07 -2.38 -0.01 3.96 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -68.68 270.97 1.92 -66.77 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.42 Total: 18.23 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 5.23 Total: 11.10 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -5.72 Total: -113.32 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.05 Total: -27.24 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -68.68 1.92 -66.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596994908.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.518 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds