Wall clock time and date at job start Sun Mar 29 2020 21:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32107 * 120.06530 * 2 1 4 4 C 1.32114 * 120.07296 * 179.97438 * 3 2 1 5 5 C 1.38778 * 120.18969 * 0.02562 * 4 3 2 6 6 N 1.31770 * 120.12481 * 359.97438 * 5 4 3 7 7 C 1.33030 * 119.92495 * 0.02562 * 6 5 4 8 8 C 1.48153 * 120.09172 * 180.02562 * 7 6 5 9 9 O 1.21522 * 119.99671 * 174.19496 * 8 7 6 10 10 N 1.34775 * 120.00213 * 354.18971 * 8 7 6 11 11 C 1.46495 * 120.00102 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47172 * 180.02562 * 11 10 8 13 13 C 1.50705 * 109.47120 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99766 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99772 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99813 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00176 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47300 * 90.00191 * 17 15 13 19 19 H 1.48507 * 109.46861 * 209.99944 * 17 15 13 20 20 H 1.48496 * 109.47029 * 329.99520 * 17 15 13 21 21 H 1.08998 * 109.47389 * 263.30842 * 1 2 3 22 22 H 1.08999 * 109.47049 * 23.30209 * 1 2 3 23 23 H 1.09000 * 109.47375 * 143.30235 * 1 2 3 24 24 H 1.07993 * 119.90348 * 180.02562 * 4 3 2 25 25 H 1.08002 * 119.93621 * 180.27180 * 5 4 3 26 26 H 0.96998 * 119.99613 * 0.02562 * 10 8 7 27 27 H 1.09001 * 109.47575 * 300.00752 * 11 10 8 28 28 H 1.09009 * 109.46670 * 60.00231 * 11 10 8 29 29 H 1.09000 * 109.47675 * 300.00284 * 12 11 10 30 30 H 1.09004 * 109.46797 * 60.00675 * 12 11 10 31 31 H 0.97004 * 120.00252 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1688 1.1433 0.0000 4 6 3.4899 1.1435 0.0005 5 6 4.1880 -0.0560 0.0005 6 7 3.5355 -1.2008 0.0005 7 6 2.2052 -1.2065 0.0000 8 6 1.4680 -2.4916 0.0006 9 8 0.2574 -2.4974 0.1066 10 7 2.1398 -3.6541 -0.1165 11 6 1.4108 -4.9247 -0.1154 12 6 2.4018 -6.0814 -0.2598 13 6 1.6518 -7.3886 -0.2592 14 1 0.5759 -7.3937 -0.1657 15 6 2.3392 -8.5778 -0.3781 16 7 1.6847 -9.7185 -0.3771 17 14 4.2002 -8.5688 -0.5391 18 1 4.8142 -8.6359 0.8114 19 1 4.6335 -9.7428 -1.3387 20 1 4.6323 -7.3208 -1.2180 21 1 -0.3634 -0.1197 1.0206 22 1 -0.3633 0.9438 -0.4065 23 1 -0.3634 -0.8240 -0.6141 24 1 4.0282 2.0797 0.0009 25 1 5.2680 -0.0510 0.0054 26 1 3.1061 -3.6493 -0.2008 27 1 0.8646 -5.0295 0.8220 28 1 0.7084 -4.9414 -0.9489 29 1 2.9483 -5.9769 -1.1970 30 1 3.1038 -6.0646 0.5740 31 1 2.1683 -10.5553 -0.4604 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597491529.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:24 Heat of formation + Delta-G solvation = 5.992084 kcal Electronic energy + Delta-G solvation = -15691.313672 eV Core-core repulsion = 12972.860775 eV Total energy + Delta-G solvation = -2718.452897 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.49574 -39.08798 -35.40012 -34.67197 -32.88198 -32.75818 -30.27643 -28.21990 -26.05988 -24.48147 -23.04279 -20.98970 -20.71735 -18.21599 -17.64802 -16.88006 -16.29678 -15.80602 -15.38871 -14.68731 -14.61245 -14.17279 -13.54672 -13.28751 -12.96702 -12.89719 -12.61542 -12.43551 -11.87632 -11.50447 -11.36254 -11.17184 -10.42115 -10.27838 -10.02154 -9.87987 -9.47833 -9.36970 -9.16852 -8.65900 -8.56418 -6.11717 -4.12060 0.21800 0.79880 2.76181 3.23650 3.25915 3.33763 3.35440 3.60867 3.85065 3.89097 4.18921 4.37863 4.62469 4.82848 5.07446 5.11595 5.21448 5.62684 5.72934 5.87570 6.05871 6.15722 6.26585 6.52378 6.67203 6.89979 7.10203 7.21236 7.40498 7.64812 7.81581 8.34918 8.44375 8.92124 9.48474 11.01202 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.041853 B = 0.005145 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.843567 B = 5441.223857 C = 6080.811721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.138 3.862 3 N -0.446 5.446 4 C 0.073 3.927 5 C 0.038 3.962 6 N -0.409 5.409 7 C 0.031 3.969 8 C 0.564 3.436 9 O -0.529 6.529 10 N -0.701 5.701 11 C 0.128 3.872 12 C -0.023 4.023 13 C -0.523 4.523 14 H 0.076 0.924 15 C 0.070 3.930 16 N -0.898 5.898 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.266 1.266 21 H 0.088 0.912 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.174 0.826 25 H 0.176 0.824 26 H 0.406 0.594 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.023 0.977 30 H 0.019 0.981 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.433 20.877 0.354 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.002 4.002 3 N -0.161 5.161 4 C -0.088 4.088 5 C -0.125 4.125 6 N -0.126 5.126 7 C -0.111 4.111 8 C 0.347 3.653 9 O -0.406 6.406 10 N -0.350 5.350 11 C 0.006 3.994 12 C -0.061 4.061 13 C -0.561 4.561 14 H 0.095 0.905 15 C -0.132 4.132 16 N -0.536 5.536 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.190 1.190 21 H 0.106 0.894 22 H 0.089 0.911 23 H 0.128 0.872 24 H 0.191 0.809 25 H 0.193 0.807 26 H 0.241 0.759 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.533 20.578 0.413 21.075 hybrid contribution 1.786 -0.066 -0.075 1.789 sum 6.320 20.511 0.338 21.466 Atomic orbital electron populations 1.21081 0.86276 1.04281 1.04800 1.22422 0.99156 0.87661 0.90921 1.68477 1.08869 1.28664 1.10134 1.24069 0.90890 1.00085 0.93776 1.23818 1.02114 0.88408 0.98114 1.68355 1.07727 1.30345 1.06149 1.22205 0.90711 0.95920 1.02241 1.17613 0.86657 0.82803 0.78196 1.90738 1.12810 1.86510 1.50576 1.46230 1.11744 1.06195 1.70833 1.21638 0.95648 0.80177 1.01950 1.19807 0.95413 0.93832 0.97012 1.20900 0.95683 0.88356 1.51209 0.90549 1.24985 0.98456 0.95390 0.94358 1.69903 1.35998 0.97591 1.50149 0.86766 0.86013 0.77872 0.78542 1.20183 1.21251 1.19023 0.89389 0.91075 0.87203 0.80862 0.80702 0.75883 0.91495 0.91464 0.95882 0.96288 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 8.88 36.00 0.32 -0.98 16 2 C 0.14 1.83 6.82 -82.04 -0.56 1.27 16 3 N -0.45 -5.28 10.42 -8.95 -0.09 -5.37 16 4 C 0.07 0.64 11.23 -17.23 -0.19 0.45 16 5 C 0.04 0.35 11.22 -17.38 -0.20 0.15 16 6 N -0.41 -5.29 9.73 -9.61 -0.09 -5.38 16 7 C 0.03 0.44 6.75 -82.84 -0.56 -0.12 16 8 C 0.56 9.53 7.75 -12.19 -0.09 9.43 16 9 O -0.53 -9.82 13.33 5.35 0.07 -9.75 16 10 N -0.70 -12.16 5.54 -61.15 -0.34 -12.49 16 11 C 0.13 2.58 5.61 -4.05 -0.02 2.56 16 12 C -0.02 -0.53 4.16 -27.88 -0.12 -0.64 16 13 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 14 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 17 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 21 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.11 1.49 5.84 -51.93 -0.30 1.19 16 24 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 25 H 0.18 0.94 8.06 -52.49 -0.42 0.51 16 26 H 0.41 6.46 7.84 -40.82 -0.32 6.14 16 27 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 29 H 0.02 0.52 7.20 -51.93 -0.37 0.15 16 30 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 272.19 15.07 4.10 4.10 Total: -1.00 -32.09 272.19 -5.61 -37.70 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -3.51 Total: 2.11 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.85 Total: -0.87 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.25 Total: -49.73 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.09 -5.61 -37.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597491529.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.696 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds