Wall clock time and date at job start Sun Mar 29 2020 21:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32107 * 120.06530 * 2 1 4 4 C 1.32114 * 120.07296 * 179.97438 * 3 2 1 5 5 C 1.38778 * 120.18969 * 0.02562 * 4 3 2 6 6 N 1.31770 * 120.12481 * 359.97438 * 5 4 3 7 7 C 1.33030 * 119.92495 * 0.02562 * 6 5 4 8 8 C 1.48153 * 120.09172 * 180.02562 * 7 6 5 9 9 O 1.21522 * 119.99671 * 174.19496 * 8 7 6 10 10 N 1.34775 * 120.00213 * 354.18971 * 8 7 6 11 11 C 1.46495 * 120.00102 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47172 * 180.02562 * 11 10 8 13 13 C 1.50705 * 109.47120 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99766 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99772 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99813 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00176 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47300 * 90.00191 * 17 15 13 19 19 H 1.48507 * 109.46861 * 209.99944 * 17 15 13 20 20 H 1.48496 * 109.47029 * 329.99520 * 17 15 13 21 21 H 1.08998 * 109.47389 * 263.30842 * 1 2 3 22 22 H 1.08999 * 109.47049 * 23.30209 * 1 2 3 23 23 H 1.09000 * 109.47375 * 143.30235 * 1 2 3 24 24 H 1.07993 * 119.90348 * 180.02562 * 4 3 2 25 25 H 1.08002 * 119.93621 * 180.27180 * 5 4 3 26 26 H 0.96998 * 119.99613 * 0.02562 * 10 8 7 27 27 H 1.09001 * 109.47575 * 300.00752 * 11 10 8 28 28 H 1.09009 * 109.46670 * 60.00231 * 11 10 8 29 29 H 1.09000 * 109.47675 * 300.00284 * 12 11 10 30 30 H 1.09004 * 109.46797 * 60.00675 * 12 11 10 31 31 H 0.97004 * 120.00252 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1688 1.1433 0.0000 4 6 3.4899 1.1435 0.0005 5 6 4.1880 -0.0560 0.0005 6 7 3.5355 -1.2008 0.0005 7 6 2.2052 -1.2065 0.0000 8 6 1.4680 -2.4916 0.0006 9 8 0.2574 -2.4974 0.1066 10 7 2.1398 -3.6541 -0.1165 11 6 1.4108 -4.9247 -0.1154 12 6 2.4018 -6.0814 -0.2598 13 6 1.6518 -7.3886 -0.2592 14 1 0.5759 -7.3937 -0.1657 15 6 2.3392 -8.5778 -0.3781 16 7 1.6847 -9.7185 -0.3771 17 14 4.2002 -8.5688 -0.5391 18 1 4.8142 -8.6359 0.8114 19 1 4.6335 -9.7428 -1.3387 20 1 4.6323 -7.3208 -1.2180 21 1 -0.3634 -0.1197 1.0206 22 1 -0.3633 0.9438 -0.4065 23 1 -0.3634 -0.8240 -0.6141 24 1 4.0282 2.0797 0.0009 25 1 5.2680 -0.0510 0.0054 26 1 3.1061 -3.6493 -0.2008 27 1 0.8646 -5.0295 0.8220 28 1 0.7084 -4.9414 -0.9489 29 1 2.9483 -5.9769 -1.1970 30 1 3.1038 -6.0646 0.5740 31 1 2.1683 -10.5553 -0.4604 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597491529.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:23 Heat of formation + Delta-G solvation = -18.770857 kcal Electronic energy + Delta-G solvation = -15692.387474 eV Core-core repulsion = 12972.860775 eV Total energy + Delta-G solvation = -2719.526699 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.41671 -40.37423 -36.86543 -35.74623 -34.74174 -33.78451 -32.06890 -29.21968 -27.38312 -25.95234 -23.94426 -22.73288 -22.08766 -19.35766 -18.94221 -18.65155 -17.07124 -16.96932 -16.73791 -16.19281 -15.92560 -15.80401 -14.84806 -14.78770 -14.54625 -13.87304 -13.76995 -13.47840 -13.36042 -13.05950 -12.75601 -12.26323 -12.19458 -12.11587 -11.77933 -11.53419 -11.14513 -10.79240 -10.42210 -10.16939 -10.00851 -8.30456 -6.37537 -0.68359 -0.03562 1.38929 1.40887 1.52367 1.62172 1.99005 2.36403 2.66145 2.94584 3.04638 3.05117 3.32966 3.70873 4.00846 4.23999 4.35134 4.40230 4.40472 4.68641 4.73012 4.80010 5.01515 5.12580 5.34739 5.37702 5.43056 5.61356 6.05495 6.20981 6.39917 6.65053 6.70425 7.05876 7.27190 8.86119 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.041853 B = 0.005145 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.843567 B = 5441.223857 C = 6080.811721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.128 3.872 3 N -0.462 5.462 4 C 0.094 3.906 5 C 0.048 3.952 6 N -0.428 5.428 7 C 0.002 3.998 8 C 0.563 3.437 9 O -0.555 6.555 10 N -0.698 5.698 11 C 0.143 3.857 12 C -0.014 4.014 13 C -0.538 4.538 14 H 0.033 0.967 15 C 0.007 3.993 16 N -0.949 5.949 17 Si 0.955 3.045 18 H -0.265 1.265 19 H -0.285 1.285 20 H -0.240 1.240 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.224 0.776 25 H 0.221 0.779 26 H 0.415 0.585 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.033 0.967 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.857 23.595 0.249 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.010 4.010 3 N -0.177 5.177 4 C -0.069 4.069 5 C -0.116 4.116 6 N -0.145 5.145 7 C -0.136 4.136 8 C 0.348 3.652 9 O -0.434 6.434 10 N -0.349 5.349 11 C 0.020 3.980 12 C -0.052 4.052 13 C -0.576 4.576 14 H 0.051 0.949 15 C -0.190 4.190 16 N -0.589 5.589 17 Si 0.778 3.222 18 H -0.190 1.190 19 H -0.211 1.211 20 H -0.164 1.164 21 H 0.103 0.897 22 H 0.106 0.894 23 H 0.108 0.892 24 H 0.240 0.760 25 H 0.237 0.763 26 H 0.252 0.748 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.921 23.308 0.309 24.619 hybrid contribution 0.738 -0.768 -0.031 1.066 sum 8.659 22.540 0.278 24.148 Atomic orbital electron populations 1.20971 0.86469 1.04251 1.04301 1.22410 0.99397 0.87887 0.91321 1.68559 1.10580 1.27646 1.10915 1.24956 0.89849 1.02047 0.90047 1.24642 1.04018 0.87330 0.95624 1.68306 1.06901 1.32466 1.06841 1.21675 0.91613 0.94492 1.05843 1.18038 0.86550 0.83560 0.77022 1.90724 1.14112 1.87116 1.51438 1.45976 1.11982 1.05298 1.71611 1.21174 0.94958 0.81167 1.00704 1.19657 0.95513 0.92073 0.97917 1.21222 0.94327 0.91089 1.50976 0.94861 1.26019 1.04571 0.94651 0.93776 1.70066 1.38556 0.98560 1.51702 0.85589 0.78528 0.78889 0.79209 1.18993 1.21071 1.16358 0.89674 0.89434 0.89241 0.75974 0.76284 0.74820 0.92918 0.92829 0.94720 0.94859 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.51 8.88 71.23 0.63 -1.87 16 2 C 0.13 3.25 6.82 42.80 0.29 3.54 16 3 N -0.46 -9.61 10.42 -182.23 -1.90 -11.51 16 4 C 0.09 1.20 11.23 84.78 0.95 2.15 16 5 C 0.05 0.67 11.22 84.83 0.95 1.62 16 6 N -0.43 -9.96 9.73 -184.32 -1.79 -11.76 16 7 C 0.00 0.07 6.75 41.88 0.28 0.35 16 8 C 0.56 19.26 7.75 86.88 0.67 19.93 16 9 O -0.55 -21.45 13.33 -3.79 -0.05 -21.50 16 10 N -0.70 -24.11 5.54 -465.68 -2.58 -26.69 16 11 C 0.14 5.93 5.61 86.38 0.48 6.41 16 12 C -0.01 -0.63 4.16 29.85 0.12 -0.50 16 13 C -0.54 -30.79 9.66 25.60 0.25 -30.54 16 14 H 0.03 2.12 7.99 -2.91 -0.02 2.09 16 15 C 0.01 0.42 5.47 84.65 0.46 0.88 16 16 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 17 Si 0.96 42.76 27.47 68.60 1.88 44.65 16 18 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.24 -9.72 6.54 99.48 0.65 -9.07 16 21 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 22 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.09 2.55 5.84 -2.39 -0.01 2.54 16 24 H 0.22 0.55 8.06 -2.91 -0.02 0.53 16 25 H 0.22 0.97 8.06 -2.91 -0.02 0.94 16 26 H 0.42 12.68 7.84 -92.71 -0.73 11.95 16 27 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.03 1.50 7.20 -2.39 -0.02 1.49 16 30 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 31 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 Total: -1.00 -72.59 272.19 1.33 -71.25 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.37 Total: 12.46 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 5.10 Total: 1.96 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -5.97 Total: -108.83 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.05 Total: -21.50 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.88 Total: 44.65 kcal Total: -72.59 1.33 -71.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597491529.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.482 kcal (2) G-P(sol) polarization free energy of solvation -72.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds