Wall clock time and date at job start Sun Mar 29 2020 22:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 115.55113 * 2 1 4 4 C 1.53007 * 117.49521 * 145.66962 * 2 1 3 5 5 C 1.52996 * 59.99954 * 107.51195 * 4 2 1 6 6 H 1.08997 * 117.49776 * 252.50791 * 5 4 2 7 7 C 1.50700 * 117.49801 * 107.49187 * 5 4 2 8 8 C 1.35173 * 126.04937 * 146.37470 * 7 5 4 9 9 C 1.40521 * 107.87657 * 179.97438 * 8 7 5 10 10 N 1.39674 * 125.98622 * 179.97438 * 9 8 7 11 11 C 1.34784 * 120.00263 * 0.02562 * 10 9 8 12 12 O 1.21758 * 119.99513 * 359.97438 * 11 10 9 13 13 C 1.46109 * 119.99848 * 179.97438 * 11 10 9 14 14 H 1.08001 * 120.00596 * 353.92800 * 13 11 10 15 15 C 1.40129 * 119.99799 * 173.92865 * 13 11 10 16 16 N 1.30631 * 120.00001 * 6.15227 * 15 13 11 17 17 Si 1.86803 * 119.99962 * 186.14882 * 15 13 11 18 18 H 1.48500 * 109.47047 * 94.98905 * 17 15 13 19 19 H 1.48497 * 109.47140 * 214.98390 * 17 15 13 20 20 H 1.48494 * 109.47198 * 334.98585 * 17 15 13 21 21 N 1.31409 * 108.02436 * 0.02562 * 9 8 7 22 22 N 1.35068 * 126.05011 * 326.06189 * 7 5 4 23 23 H 0.97000 * 125.96754 * 359.96961 * 22 7 5 24 24 H 1.09005 * 109.47092 * 325.59097 * 1 2 3 25 25 H 1.09004 * 109.46512 * 85.58397 * 1 2 3 26 26 H 1.08993 * 109.47509 * 205.58437 * 1 2 3 27 27 H 1.09004 * 117.49672 * 215.00340 * 4 2 1 28 28 H 1.09006 * 117.49475 * 359.97438 * 4 2 1 29 29 H 1.08000 * 126.06180 * 0.02689 * 8 7 5 30 30 H 0.97004 * 120.00015 * 180.02562 * 10 9 8 31 31 H 0.97000 * 119.99938 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2364 -1.1208 0.7654 5 6 2.2369 -1.1210 -0.7645 6 1 1.6119 -1.8587 -1.2679 7 6 3.5299 -0.7811 -1.4600 8 6 3.9602 -1.2940 -2.6343 9 6 5.2066 -0.7148 -2.9270 10 7 5.9895 -0.9777 -4.0534 11 6 5.5627 -1.8583 -4.9802 12 8 4.4948 -2.4250 -4.8353 13 6 6.3815 -2.1329 -6.1588 14 1 7.2797 -1.5604 -6.3377 15 6 6.0014 -3.1390 -7.0571 16 7 4.8561 -3.7492 -6.9079 17 14 7.1325 -3.6075 -8.4680 18 1 7.9660 -4.7700 -8.0691 19 1 6.3184 -3.9669 -9.6567 20 1 8.0124 -2.4582 -8.7996 21 7 5.5070 0.1167 -1.9548 22 7 4.4611 0.0943 -1.0232 23 1 4.4145 0.6152 -0.2062 24 1 -0.3633 0.8479 0.5808 25 1 -0.3632 0.0791 -1.0247 26 1 -0.3634 -0.9268 0.4437 27 1 3.1713 -0.8747 1.2690 28 1 1.6110 -1.8579 1.2693 29 1 3.4383 -2.0196 -3.2405 30 1 6.8405 -0.5265 -4.1687 31 1 4.5928 -4.4453 -7.5299 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597797827.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:40 Heat of formation + Delta-G solvation = 55.192140 kcal Electronic energy + Delta-G solvation = -15812.563248 eV Core-core repulsion = 13096.243825 eV Total energy + Delta-G solvation = -2716.319423 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.66573 -37.88337 -37.05160 -33.37732 -32.41696 -29.98066 -29.52944 -28.01641 -26.36776 -23.06160 -21.55244 -20.85354 -19.84170 -18.83403 -17.46162 -16.90895 -15.48268 -15.05059 -14.69795 -14.26539 -14.02940 -13.97203 -13.19730 -12.72338 -12.61531 -12.48472 -12.10109 -11.76295 -11.59741 -11.31065 -11.14178 -10.65869 -10.61146 -10.31162 -10.13004 -9.89233 -9.67658 -8.91622 -7.87440 -7.70675 -7.24968 -6.34305 -4.79700 2.35546 3.08975 3.16213 3.20015 3.32719 3.51923 3.94996 4.02935 4.38035 4.53599 4.71021 4.76286 4.87264 5.14956 5.40033 5.56028 5.64489 5.68945 5.69596 5.83707 5.90542 6.07828 6.18379 6.59514 6.66732 7.26572 7.35766 7.59040 7.92192 8.09357 8.13983 8.45375 8.87405 9.32593 10.40449 10.58293 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.048594 B = 0.005191 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.062089 B = 5392.837267 C = 5818.380912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.150 4.150 3 H 0.101 0.899 4 C -0.172 4.172 5 C -0.079 4.079 6 H 0.129 0.871 7 C 0.103 3.897 8 C -0.248 4.248 9 C 0.333 3.667 10 N -0.658 5.658 11 C 0.550 3.450 12 O -0.554 6.554 13 C -0.536 4.536 14 H 0.074 0.926 15 C 0.088 3.912 16 N -0.759 5.759 17 Si 0.914 3.086 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.263 1.263 21 N -0.359 5.359 22 N -0.490 5.490 23 H 0.427 0.573 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.174 0.826 30 H 0.397 0.603 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 4.810 10.689 12.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.168 4.168 3 H 0.119 0.881 4 C -0.209 4.209 5 C -0.099 4.099 6 H 0.147 0.853 7 C -0.023 4.023 8 C -0.279 4.279 9 C 0.076 3.924 10 N -0.307 5.307 11 C 0.356 3.644 12 O -0.435 6.435 13 C -0.572 4.572 14 H 0.093 0.907 15 C -0.134 4.134 16 N -0.387 5.387 17 Si 0.738 3.262 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.187 1.187 21 N -0.193 5.193 22 N -0.200 5.200 23 H 0.269 0.731 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.191 0.809 30 H 0.230 0.770 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.812 4.987 11.015 13.014 hybrid contribution 0.500 -0.249 -0.569 0.797 sum -4.313 4.738 10.446 12.254 Atomic orbital electron populations 1.21355 0.92286 1.01922 1.02293 1.22457 0.95759 0.94395 1.04214 0.88060 1.23213 1.02517 1.01593 0.93583 1.20702 0.94132 1.02163 0.92893 0.85298 1.20053 0.91691 0.94718 0.95858 1.21777 0.98124 1.09650 0.98369 1.19525 0.91662 0.92718 0.88449 1.43567 1.22109 1.46105 1.18906 1.18389 0.86603 0.77427 0.81964 1.90532 1.23671 1.51646 1.77619 1.20779 1.10147 1.20220 1.06057 0.90742 1.25724 0.94784 0.94840 0.98005 1.69986 1.18158 1.17749 1.32817 0.86242 0.80329 0.79499 0.80087 1.19633 1.20298 1.18696 1.77354 1.10821 1.28011 1.03139 1.45552 1.15706 1.37286 1.21478 0.73107 0.92173 0.91768 0.92301 0.88992 0.87976 0.80866 0.76997 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.19 37.16 0.38 -0.70 16 2 C -0.15 -1.59 6.09 -90.62 -0.55 -2.14 16 3 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.17 -1.79 9.86 -26.73 -0.26 -2.06 16 5 C -0.08 -1.07 5.97 -91.77 -0.55 -1.62 16 6 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 7 C 0.10 1.85 6.62 -82.26 -0.54 1.31 16 8 C -0.25 -5.64 9.51 -39.81 -0.38 -6.01 16 9 C 0.33 7.81 8.10 -154.67 -1.25 6.56 16 10 N -0.66 -15.95 5.43 -12.52 -0.07 -16.02 16 11 C 0.55 15.54 7.70 -13.10 -0.10 15.44 16 12 O -0.55 -17.17 12.15 5.14 0.06 -17.11 16 13 C -0.54 -14.70 9.53 -35.72 -0.34 -15.04 16 14 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 15 C 0.09 2.36 5.50 -17.35 -0.10 2.26 16 16 N -0.76 -21.83 11.85 55.55 0.66 -21.17 16 17 Si 0.91 19.45 29.56 -169.99 -5.03 14.43 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 19 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 21 N -0.36 -7.53 12.73 31.39 0.40 -7.13 16 22 N -0.49 -8.37 7.31 33.47 0.24 -8.12 16 23 H 0.43 5.62 8.96 -182.61 -1.64 3.98 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.10 0.91 8.05 -51.93 -0.42 0.50 16 29 H 0.17 4.39 5.90 -52.49 -0.31 4.08 16 30 H 0.40 8.48 8.80 -40.82 -0.36 8.12 16 31 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 LS Contribution 275.87 15.07 4.16 4.16 Total: -1.00 -32.99 275.87 -8.06 -41.06 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -4.79 Total: 11.91 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -3.70 Total: -2.00 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 1.23 Total: -52.44 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.06 Total: -17.11 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.99 -8.06 -41.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597797827.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.250 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds