Wall clock time and date at job start Sun Mar 29 2020 22:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 115.55925 * 2 1 4 4 C 1.53075 * 117.51546 * 145.71013 * 2 1 3 5 5 C 1.53000 * 59.98490 * 107.47217 * 4 2 1 6 6 H 1.08999 * 117.50059 * 107.50043 * 5 4 2 7 7 C 1.50698 * 117.50052 * 252.49924 * 5 4 2 8 8 C 1.35174 * 126.04827 * 13.51976 * 7 5 4 9 9 C 1.40516 * 107.87968 * 179.97438 * 8 7 5 10 10 N 1.39676 * 125.98820 * 179.97438 * 9 8 7 11 11 C 1.34770 * 120.00172 * 0.02562 * 10 9 8 12 12 O 1.21756 * 120.00308 * 359.97438 * 11 10 9 13 13 C 1.46127 * 119.99936 * 180.02562 * 11 10 9 14 14 H 1.07996 * 120.00142 * 359.97438 * 13 11 10 15 15 C 1.40131 * 119.99850 * 180.02562 * 13 11 10 16 16 N 1.30637 * 120.00019 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99835 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46798 * 269.99822 * 17 15 13 19 19 H 1.48501 * 109.47171 * 29.99783 * 17 15 13 20 20 H 1.48501 * 109.46828 * 149.99810 * 17 15 13 21 21 N 1.31413 * 108.02029 * 0.22834 * 9 8 7 22 22 N 1.35069 * 126.05124 * 193.50419 * 7 5 4 23 23 H 0.96997 * 125.97258 * 0.02562 * 22 7 5 24 24 H 1.09001 * 109.46746 * 211.53075 * 1 2 3 25 25 H 1.09000 * 109.46822 * 331.51887 * 1 2 3 26 26 H 1.08994 * 109.47770 * 91.52597 * 1 2 3 27 27 H 1.09007 * 117.50925 * 359.97438 * 4 2 1 28 28 H 1.08997 * 117.49565 * 214.95870 * 4 2 1 29 29 H 1.08001 * 126.06554 * 359.96272 * 8 7 5 30 30 H 0.97005 * 119.99694 * 179.97438 * 10 9 8 31 31 H 0.96998 * 119.99903 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1216 0.7648 5 6 2.2364 -1.1210 -0.7652 6 1 3.1712 -0.8750 -1.2688 7 6 1.3719 -2.1405 -1.4610 8 6 0.4040 -2.8882 -0.8856 9 6 -0.1572 -3.7070 -1.8802 10 7 -1.1894 -4.6301 -1.6974 11 6 -1.7381 -4.7948 -0.4775 12 8 -1.3337 -4.1392 0.4655 13 6 -2.8176 -5.7609 -0.2863 14 1 -3.1760 -6.3427 -1.1225 15 6 -3.3884 -5.9317 0.9821 16 7 -2.9552 -5.2276 1.9936 17 14 -4.7688 -7.1663 1.2264 18 1 -6.0759 -6.4981 1.0015 19 1 -4.6110 -8.2829 0.2603 20 1 -4.7170 -7.6990 2.6116 21 7 0.4631 -3.4560 -3.0112 22 7 1.4270 -2.4686 -2.7701 23 1 2.0307 -2.0892 -3.4277 24 1 -0.3633 -0.8760 0.5374 25 1 -0.3633 0.9033 0.4901 26 1 -0.3634 -0.0274 -1.0272 27 1 1.6124 -1.8594 1.2684 28 1 3.1725 -0.8758 1.2677 29 1 0.1135 -2.8614 0.1543 30 1 -1.5118 -5.1522 -2.4487 31 1 -3.3506 -5.3455 2.8714 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597797828.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:43 Heat of formation + Delta-G solvation = 57.934105 kcal Electronic energy + Delta-G solvation = -16263.339691 eV Core-core repulsion = 13547.139168 eV Total energy + Delta-G solvation = -2716.200522 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.65857 -37.70730 -37.05814 -33.39574 -32.40844 -29.73858 -29.08039 -28.10446 -26.36947 -23.12872 -21.54873 -20.72729 -19.37704 -18.89311 -17.42422 -16.55843 -15.40772 -15.32756 -14.85640 -14.21655 -14.09731 -13.34617 -12.98674 -12.82019 -12.52654 -12.42328 -11.83654 -11.39814 -11.31434 -11.13548 -11.10016 -10.62970 -10.41765 -10.32337 -10.11083 -9.67151 -9.60138 -8.91810 -7.84791 -7.70558 -7.23163 -6.33680 -4.80183 2.41577 3.08871 3.15884 3.19303 3.33719 3.57078 4.02471 4.12513 4.52877 4.53935 4.86998 5.03970 5.06851 5.28652 5.50860 5.70518 5.86486 5.95816 6.02684 6.12382 6.22623 6.32997 6.60675 6.68009 6.75183 7.26681 7.35982 7.59791 7.95342 8.09875 8.15247 8.47258 8.87165 9.33106 10.40522 10.58284 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.034814 B = 0.006679 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.083730 B = 4191.259333 C = 4767.063322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.135 4.135 3 H 0.104 0.896 4 C -0.158 4.158 5 C -0.100 4.100 6 H 0.109 0.891 7 C 0.108 3.892 8 C -0.251 4.251 9 C 0.332 3.668 10 N -0.658 5.658 11 C 0.551 3.449 12 O -0.554 6.554 13 C -0.535 4.535 14 H 0.073 0.927 15 C 0.088 3.912 16 N -0.759 5.759 17 Si 0.914 3.086 18 H -0.271 1.271 19 H -0.263 1.263 20 H -0.278 1.278 21 N -0.361 5.361 22 N -0.489 5.489 23 H 0.428 0.572 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.174 0.826 30 H 0.396 0.604 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.851 6.929 -3.432 10.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.154 4.154 3 H 0.122 0.878 4 C -0.196 4.196 5 C -0.120 4.120 6 H 0.127 0.873 7 C -0.019 4.019 8 C -0.282 4.282 9 C 0.075 3.925 10 N -0.308 5.308 11 C 0.357 3.643 12 O -0.435 6.435 13 C -0.571 4.571 14 H 0.092 0.908 15 C -0.134 4.134 16 N -0.387 5.387 17 Si 0.738 3.262 18 H -0.196 1.196 19 H -0.187 1.187 20 H -0.203 1.203 21 N -0.195 5.195 22 N -0.198 5.198 23 H 0.271 0.729 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.127 0.873 28 H 0.115 0.885 29 H 0.191 0.809 30 H 0.229 0.771 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.107 7.090 -3.668 10.688 hybrid contribution -0.454 -0.498 0.043 0.675 sum 6.654 6.592 -3.625 10.043 Atomic orbital electron populations 1.21429 0.92001 1.02600 1.02246 1.22431 0.96233 0.93435 1.03252 0.87786 1.23264 1.02652 1.01672 0.91999 1.20467 0.98894 0.98257 0.94399 0.87319 1.20039 0.98537 0.98121 0.85238 1.21761 1.01430 1.02265 1.02755 1.19531 0.90186 0.91403 0.91374 1.43553 1.34130 1.39232 1.13837 1.18361 0.82877 0.84003 0.79070 1.90522 1.64027 1.49512 1.39431 1.20779 1.18093 1.22410 0.95852 0.90840 1.25718 0.96872 0.95509 0.95265 1.69977 1.35362 1.32929 1.00419 0.86265 0.80962 0.80751 0.78237 1.19581 1.18741 1.20312 1.77351 1.09002 1.12537 1.20630 1.45561 1.32622 1.34400 1.07259 0.72925 0.90682 0.92681 0.92495 0.87253 0.88536 0.80863 0.77055 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.79 37.16 0.33 -1.56 16 2 C -0.13 -1.73 6.41 -90.58 -0.58 -2.31 16 3 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 4 C -0.16 -2.11 9.66 -26.69 -0.26 -2.37 16 5 C -0.10 -1.37 6.33 -91.77 -0.58 -1.95 16 6 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 7 C 0.11 1.91 6.23 -82.26 -0.51 1.39 16 8 C -0.25 -5.54 7.50 -39.81 -0.30 -5.84 16 9 C 0.33 7.70 8.10 -154.67 -1.25 6.45 16 10 N -0.66 -15.84 5.43 -12.52 -0.07 -15.91 16 11 C 0.55 15.37 7.70 -13.10 -0.10 15.26 16 12 O -0.55 -16.84 12.13 5.14 0.06 -16.78 16 13 C -0.53 -14.57 9.53 -35.71 -0.34 -14.91 16 14 H 0.07 1.83 7.85 -52.49 -0.41 1.41 16 15 C 0.09 2.34 5.50 -17.35 -0.10 2.24 16 16 N -0.76 -21.58 11.82 55.55 0.66 -20.93 16 17 Si 0.91 19.37 29.56 -169.99 -5.02 14.35 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 N -0.36 -7.55 12.73 31.39 0.40 -7.15 16 22 N -0.49 -8.37 7.35 33.47 0.25 -8.12 16 23 H 0.43 5.56 8.96 -182.62 -1.64 3.92 16 24 H 0.07 1.35 6.42 -51.93 -0.33 1.02 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.91 7.99 -51.93 -0.42 0.50 16 27 H 0.11 1.74 6.94 -51.93 -0.36 1.38 16 28 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.17 4.26 4.25 -52.49 -0.22 4.04 16 30 H 0.40 8.45 8.80 -40.82 -0.36 8.09 16 31 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 LS Contribution 268.17 15.07 4.04 4.04 Total: -1.00 -32.43 268.17 -7.94 -40.37 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -4.56 Total: 13.71 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -3.69 Total: -3.59 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 1.23 Total: -52.10 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.06 Total: -16.78 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.43 -7.94 -40.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597797828.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.305 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds