Wall clock time and date at job start Sun Mar 29 2020 22:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 115.55925 * 2 1 4 4 C 1.53075 * 117.51546 * 145.71013 * 2 1 3 5 5 C 1.53000 * 59.98490 * 107.47217 * 4 2 1 6 6 H 1.08999 * 117.50059 * 107.50043 * 5 4 2 7 7 C 1.50698 * 117.50052 * 252.49924 * 5 4 2 8 8 C 1.35174 * 126.04827 * 13.51976 * 7 5 4 9 9 C 1.40516 * 107.87968 * 179.97438 * 8 7 5 10 10 N 1.39676 * 125.98820 * 179.97438 * 9 8 7 11 11 C 1.34770 * 120.00172 * 0.02562 * 10 9 8 12 12 O 1.21756 * 120.00308 * 359.97438 * 11 10 9 13 13 C 1.46127 * 119.99936 * 180.02562 * 11 10 9 14 14 H 1.07996 * 120.00142 * 359.97438 * 13 11 10 15 15 C 1.40131 * 119.99850 * 180.02562 * 13 11 10 16 16 N 1.30637 * 120.00019 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99835 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46798 * 269.99822 * 17 15 13 19 19 H 1.48501 * 109.47171 * 29.99783 * 17 15 13 20 20 H 1.48501 * 109.46828 * 149.99810 * 17 15 13 21 21 N 1.31413 * 108.02029 * 0.22834 * 9 8 7 22 22 N 1.35069 * 126.05124 * 193.50419 * 7 5 4 23 23 H 0.96997 * 125.97258 * 0.02562 * 22 7 5 24 24 H 1.09001 * 109.46746 * 211.53075 * 1 2 3 25 25 H 1.09000 * 109.46822 * 331.51887 * 1 2 3 26 26 H 1.08994 * 109.47770 * 91.52597 * 1 2 3 27 27 H 1.09007 * 117.50925 * 359.97438 * 4 2 1 28 28 H 1.08997 * 117.49565 * 214.95870 * 4 2 1 29 29 H 1.08001 * 126.06554 * 359.96272 * 8 7 5 30 30 H 0.97005 * 119.99694 * 179.97438 * 10 9 8 31 31 H 0.96998 * 119.99903 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1216 0.7648 5 6 2.2364 -1.1210 -0.7652 6 1 3.1712 -0.8750 -1.2688 7 6 1.3719 -2.1405 -1.4610 8 6 0.4040 -2.8882 -0.8856 9 6 -0.1572 -3.7070 -1.8802 10 7 -1.1894 -4.6301 -1.6974 11 6 -1.7381 -4.7948 -0.4775 12 8 -1.3337 -4.1392 0.4655 13 6 -2.8176 -5.7609 -0.2863 14 1 -3.1760 -6.3427 -1.1225 15 6 -3.3884 -5.9317 0.9821 16 7 -2.9552 -5.2276 1.9936 17 14 -4.7688 -7.1663 1.2264 18 1 -6.0759 -6.4981 1.0015 19 1 -4.6110 -8.2829 0.2603 20 1 -4.7170 -7.6990 2.6116 21 7 0.4631 -3.4560 -3.0112 22 7 1.4270 -2.4686 -2.7701 23 1 2.0307 -2.0892 -3.4277 24 1 -0.3633 -0.8760 0.5374 25 1 -0.3633 0.9033 0.4901 26 1 -0.3634 -0.0274 -1.0272 27 1 1.6124 -1.8594 1.2684 28 1 3.1725 -0.8758 1.2677 29 1 0.1135 -2.8614 0.1543 30 1 -1.5118 -5.1522 -2.4487 31 1 -3.3506 -5.3455 2.8714 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597797828.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:42 Heat of formation + Delta-G solvation = 34.989421 kcal Electronic energy + Delta-G solvation = -16264.334647 eV Core-core repulsion = 13547.139168 eV Total energy + Delta-G solvation = -2717.195478 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.24962 -39.50777 -38.46901 -35.33720 -34.48943 -31.45382 -30.63136 -29.36304 -28.42587 -24.44419 -23.45200 -21.96586 -20.85545 -20.67208 -19.34132 -18.03275 -17.37304 -16.89668 -16.26170 -15.94030 -15.80178 -14.81304 -14.60190 -14.51309 -14.36719 -13.93785 -13.20783 -13.09404 -12.81808 -12.71013 -12.69058 -12.27049 -12.01168 -11.86376 -11.67348 -11.13758 -10.92079 -10.86643 -9.84613 -9.42111 -9.03231 -8.36118 -6.94098 0.87112 1.41910 1.42255 1.58710 1.81777 1.83889 2.26039 2.53184 2.88260 2.97506 3.60134 3.69388 3.86771 3.90740 4.11469 4.39849 4.50327 4.69841 4.85667 4.90779 4.98037 5.05350 5.15797 5.25643 5.26676 5.46990 5.59110 5.68990 6.08265 6.28722 6.52567 6.76687 6.81795 7.41019 8.33703 8.57323 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.034814 B = 0.006679 C = 0.005872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.083730 B = 4191.259333 C = 4767.063322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.120 4.120 3 H 0.148 0.852 4 C -0.161 4.161 5 C -0.106 4.106 6 H 0.155 0.845 7 C 0.139 3.861 8 C -0.293 4.293 9 C 0.301 3.699 10 N -0.656 5.656 11 C 0.535 3.465 12 O -0.591 6.591 13 C -0.562 4.562 14 H 0.092 0.908 15 C 0.033 3.967 16 N -0.808 5.808 17 Si 1.002 2.998 18 H -0.261 1.261 19 H -0.250 1.250 20 H -0.271 1.271 21 N -0.366 5.366 22 N -0.464 5.464 23 H 0.451 0.549 24 H 0.031 0.969 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.140 0.860 30 H 0.406 0.594 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.874 7.708 -4.338 11.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.138 4.138 3 H 0.166 0.834 4 C -0.199 4.199 5 C -0.125 4.125 6 H 0.172 0.828 7 C 0.009 3.991 8 C -0.324 4.324 9 C 0.046 3.954 10 N -0.306 5.306 11 C 0.342 3.658 12 O -0.475 6.475 13 C -0.598 4.598 14 H 0.111 0.889 15 C -0.184 4.184 16 N -0.437 5.437 17 Si 0.821 3.179 18 H -0.185 1.185 19 H -0.173 1.173 20 H -0.195 1.195 21 N -0.200 5.200 22 N -0.176 5.176 23 H 0.299 0.701 24 H 0.050 0.950 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.151 0.849 29 H 0.158 0.842 30 H 0.241 0.759 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.160 7.872 -4.654 12.256 hybrid contribution -0.677 -0.634 0.278 0.968 sum 7.483 7.238 -4.376 11.293 Atomic orbital electron populations 1.21382 0.94413 1.01660 1.00857 1.22541 0.94349 0.95017 1.01935 0.83405 1.23275 1.03698 1.01131 0.91764 1.20797 0.99901 0.97389 0.94440 0.82757 1.20420 0.96766 0.96886 0.85009 1.21511 1.04305 1.04959 1.01630 1.19723 0.90906 0.92247 0.92557 1.43155 1.34512 1.39742 1.13146 1.18751 0.83310 0.84069 0.79703 1.90510 1.65203 1.50799 1.40960 1.21306 1.18399 1.22806 0.97258 0.88946 1.26963 0.99614 0.97486 0.94359 1.70127 1.37290 1.34964 1.01313 0.84943 0.76678 0.77680 0.78583 1.18533 1.17293 1.19527 1.77255 1.09562 1.13507 1.19709 1.45558 1.31528 1.32798 1.07699 0.70142 0.94991 0.90479 0.93916 0.91209 0.84867 0.84237 0.75893 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 8.79 71.98 0.63 -3.17 16 2 C -0.12 -2.75 6.41 -10.77 -0.07 -2.82 16 3 H 0.15 2.24 8.14 -2.39 -0.02 2.23 16 4 C -0.16 -4.04 9.66 30.62 0.30 -3.74 16 5 C -0.11 -2.57 6.33 -11.54 -0.07 -2.65 16 6 H 0.15 2.47 8.14 -2.39 -0.02 2.45 16 7 C 0.14 4.82 6.23 41.35 0.26 5.08 16 8 C -0.29 -13.58 7.50 22.12 0.17 -13.41 16 9 C 0.30 14.50 8.10 133.46 1.08 15.58 16 10 N -0.66 -33.12 5.43 -311.70 -1.69 -34.81 16 11 C 0.54 31.52 7.70 86.29 0.66 32.18 16 12 O -0.59 -38.51 12.13 -4.53 -0.05 -38.57 16 13 C -0.56 -31.51 9.53 24.78 0.24 -31.27 16 14 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 15 C 0.03 1.77 5.50 85.33 0.47 2.24 16 16 N -0.81 -47.80 11.82 21.85 0.26 -47.54 16 17 Si 1.00 39.86 29.56 68.60 2.03 41.89 16 18 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 19 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 20 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 21 N -0.37 -15.26 12.73 -54.59 -0.69 -15.96 16 22 N -0.46 -15.07 7.35 -48.02 -0.35 -15.43 16 23 H 0.45 10.22 8.96 -213.34 -1.91 8.31 16 24 H 0.03 1.23 6.42 -2.39 -0.02 1.22 16 25 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.04 1.38 7.99 -2.39 -0.02 1.36 16 27 H 0.07 2.35 6.94 -2.38 -0.02 2.34 16 28 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.14 7.52 4.25 -2.91 -0.01 7.51 16 30 H 0.41 18.02 8.80 -92.70 -0.82 17.20 16 31 H 0.28 14.86 8.29 -92.71 -0.77 14.09 16 Total: -1.00 -75.85 268.17 1.61 -74.23 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: -1.54 Total: 38.16 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 3.66 Total: -1.98 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -2.48 Total: -113.74 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -0.05 Total: -38.57 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -75.85 1.61 -74.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597797828.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.223 kcal (2) G-P(sol) polarization free energy of solvation -75.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds