Wall clock time and date at job start Sun Mar 29 2020 21:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38260 * 119.91342 * 2 1 4 4 N 1.32180 * 120.09225 * 179.97438 * 3 2 1 5 5 C 1.32636 * 119.92637 * 0.02562 * 4 3 2 6 6 N 1.39401 * 120.08729 * 179.97438 * 5 4 3 7 7 C 1.34783 * 119.99851 * 5.39875 * 6 5 4 8 8 O 1.21279 * 119.99667 * 355.17776 * 7 6 5 9 9 C 1.50698 * 119.99969 * 175.17576 * 7 6 5 10 10 C 1.52995 * 109.46871 * 180.02562 * 9 7 6 11 11 C 1.50708 * 109.47054 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99911 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99752 * 180.02562 * 11 10 9 14 14 N 1.31506 * 120.00578 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99506 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47336 * 89.99966 * 15 13 11 17 17 H 1.48497 * 109.47046 * 209.99604 * 15 13 11 18 18 H 1.48495 * 109.47460 * 329.99945 * 15 13 11 19 19 C 1.39191 * 119.83168 * 0.25581 * 5 4 3 20 20 N 1.31985 * 119.90424 * 359.45203 * 19 5 4 21 21 H 1.09001 * 109.47219 * 90.00049 * 1 2 3 22 22 H 1.09005 * 109.46842 * 209.99800 * 1 2 3 23 23 H 1.08999 * 109.47509 * 329.99708 * 1 2 3 24 24 H 1.07997 * 119.95961 * 359.97438 * 3 2 1 25 25 H 0.96993 * 120.00034 * 185.68293 * 6 5 4 26 26 H 1.08999 * 109.47194 * 300.00298 * 9 7 6 27 27 H 1.09001 * 109.47327 * 60.00083 * 9 7 6 28 28 H 1.08999 * 109.47772 * 299.99752 * 10 9 7 29 29 H 1.09008 * 109.47487 * 60.00467 * 10 9 7 30 30 H 0.97001 * 120.00484 * 180.02562 * 14 13 11 31 31 H 1.07999 * 120.04356 * 179.74554 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1984 0.0000 4 7 3.5183 1.2025 0.0005 5 6 4.1836 0.0551 0.0005 6 7 5.5776 0.0555 0.0005 7 6 6.2511 1.2178 0.1103 8 8 5.6475 2.2697 0.1211 9 6 7.7541 1.2103 0.2198 10 6 8.2644 2.6482 0.3327 11 6 9.7674 2.6407 0.4429 12 1 10.3049 1.7041 0.4329 13 6 10.4562 3.8297 0.5564 14 7 9.8018 4.9703 0.5680 15 14 12.3193 3.8203 0.6922 16 1 12.9150 3.8919 -0.6663 17 1 12.7633 4.9917 1.4896 18 1 12.7606 2.5701 1.3609 19 6 3.4863 -1.1496 -0.0054 20 7 2.1665 -1.1460 -0.0001 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 1.6545 2.1325 -0.0004 25 1 6.0628 -0.7802 -0.0827 26 1 8.0511 0.6491 1.1058 27 1 8.1807 0.7416 -0.6670 28 1 7.9675 3.2098 -0.5530 29 1 7.8378 3.1166 1.2198 30 1 10.2864 5.8068 0.6475 31 1 4.0246 -2.0859 -0.0096 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602401826.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:18 Heat of formation + Delta-G solvation = 9.808131 kcal Electronic energy + Delta-G solvation = -15514.254742 eV Core-core repulsion = 12795.967321 eV Total energy + Delta-G solvation = -2718.287421 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.29817 -39.17624 -35.34506 -33.89931 -33.49249 -32.22525 -30.96672 -27.66146 -25.63852 -24.87353 -23.05665 -21.52281 -19.97275 -18.10254 -17.47861 -16.57289 -16.02456 -15.63502 -15.41113 -14.69043 -14.59677 -14.39351 -13.39898 -13.25745 -12.82228 -12.59778 -12.38840 -12.23180 -11.45384 -11.22637 -11.22298 -10.95494 -10.63537 -10.50041 -10.02597 -9.78057 -9.58725 -9.15882 -8.68934 -8.37001 -8.27941 -5.99386 -4.04435 0.75405 1.18088 2.92876 3.06267 3.31503 3.37837 3.40204 3.78727 4.07159 4.27137 4.39096 4.46169 4.85209 4.95431 5.30509 5.35688 5.38532 5.41200 5.54862 5.70968 6.06769 6.10601 6.10809 6.56395 6.75704 7.15552 7.48154 7.69606 7.79109 7.92992 8.01801 8.32426 8.58385 9.03492 9.59463 11.11482 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.077115 B = 0.004204 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.007207 B = 6659.291259 C = 6991.794770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.023 3.977 3 C 0.092 3.908 4 N -0.432 5.432 5 C 0.318 3.682 6 N -0.664 5.664 7 C 0.496 3.504 8 O -0.463 6.463 9 C -0.127 4.127 10 C 0.036 3.964 11 C -0.529 4.529 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.889 5.889 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.015 3.985 20 N -0.415 5.415 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.169 0.831 25 H 0.418 0.582 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.261 0.739 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.384 -12.879 -1.341 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.070 4.070 4 N -0.152 5.152 5 C 0.083 3.917 6 N -0.312 5.312 7 C 0.283 3.717 8 O -0.330 6.330 9 C -0.167 4.167 10 C -0.002 4.002 11 C -0.567 4.567 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.527 5.527 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.151 4.151 20 N -0.130 5.130 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.186 0.814 25 H 0.255 0.745 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.655 -11.818 -1.286 18.870 hybrid contribution 1.364 -0.396 0.016 1.421 sum -13.291 -12.214 -1.270 18.096 Atomic orbital electron populations 1.20549 0.87897 1.03491 1.02997 1.22091 0.98316 0.89682 1.01683 1.23617 0.89689 0.99158 0.94541 1.68597 1.08189 1.26944 1.11431 1.19716 0.86672 0.91042 0.94267 1.44162 1.02341 1.12366 1.72331 1.22050 0.91742 0.82503 0.75376 1.90787 1.69784 1.29934 1.42453 1.21933 0.86745 1.05158 1.02826 1.18934 0.95129 0.87389 0.98724 1.21183 0.91690 0.92622 1.51231 0.92511 1.25025 0.98474 0.95613 0.95247 1.69991 1.35517 0.97449 1.49732 0.86574 0.85628 0.77593 0.78048 1.20646 1.21202 1.19861 1.23127 0.90764 0.97336 1.03852 1.68125 1.07613 1.29346 1.07894 0.90562 0.90626 0.90526 0.81380 0.74541 0.89741 0.89787 0.95667 0.95679 0.92878 0.81487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 10.19 36.01 0.37 -0.33 16 2 C 0.02 0.27 6.78 -82.42 -0.56 -0.29 16 3 C 0.09 1.22 10.87 -17.39 -0.19 1.03 16 4 N -0.43 -7.42 8.07 -12.17 -0.10 -7.52 16 5 C 0.32 4.73 7.43 -154.41 -1.15 3.59 16 6 N -0.66 -9.42 5.39 -11.33 -0.06 -9.48 16 7 C 0.50 9.47 7.79 -10.98 -0.09 9.38 16 8 O -0.46 -11.01 14.27 5.56 0.08 -10.94 16 9 C -0.13 -2.46 5.64 -27.89 -0.16 -2.61 16 10 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 11 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 12 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 15 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C 0.02 0.19 11.09 -17.13 -0.19 0.00 16 20 N -0.41 -5.24 10.41 -9.12 -0.10 -5.34 16 21 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 24 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 25 H 0.42 3.95 8.71 -40.82 -0.36 3.60 16 26 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 28 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 29 H 0.02 0.73 8.10 -51.92 -0.42 0.31 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 278.63 15.07 4.20 4.20 Total: -1.00 -36.18 278.63 -6.45 -42.62 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -3.69 Total: -1.58 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.49 Total: -1.92 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.48 Total: -48.83 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -36.18 -6.45 -42.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602401826.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.429 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds