Wall clock time and date at job start Sun Mar 29 2020 21:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38260 * 119.91342 * 2 1 4 4 N 1.32180 * 120.09225 * 179.97438 * 3 2 1 5 5 C 1.32636 * 119.92637 * 0.02562 * 4 3 2 6 6 N 1.39401 * 120.08729 * 179.97438 * 5 4 3 7 7 C 1.34783 * 119.99851 * 5.39875 * 6 5 4 8 8 O 1.21279 * 119.99667 * 355.17776 * 7 6 5 9 9 C 1.50698 * 119.99969 * 175.17576 * 7 6 5 10 10 C 1.52995 * 109.46871 * 180.02562 * 9 7 6 11 11 C 1.50708 * 109.47054 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99911 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99752 * 180.02562 * 11 10 9 14 14 N 1.31506 * 120.00578 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99506 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47336 * 89.99966 * 15 13 11 17 17 H 1.48497 * 109.47046 * 209.99604 * 15 13 11 18 18 H 1.48495 * 109.47460 * 329.99945 * 15 13 11 19 19 C 1.39191 * 119.83168 * 0.25581 * 5 4 3 20 20 N 1.31985 * 119.90424 * 359.45203 * 19 5 4 21 21 H 1.09001 * 109.47219 * 90.00049 * 1 2 3 22 22 H 1.09005 * 109.46842 * 209.99800 * 1 2 3 23 23 H 1.08999 * 109.47509 * 329.99708 * 1 2 3 24 24 H 1.07997 * 119.95961 * 359.97438 * 3 2 1 25 25 H 0.96993 * 120.00034 * 185.68293 * 6 5 4 26 26 H 1.08999 * 109.47194 * 300.00298 * 9 7 6 27 27 H 1.09001 * 109.47327 * 60.00083 * 9 7 6 28 28 H 1.08999 * 109.47772 * 299.99752 * 10 9 7 29 29 H 1.09008 * 109.47487 * 60.00467 * 10 9 7 30 30 H 0.97001 * 120.00484 * 180.02562 * 14 13 11 31 31 H 1.07999 * 120.04356 * 179.74554 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1984 0.0000 4 7 3.5183 1.2025 0.0005 5 6 4.1836 0.0551 0.0005 6 7 5.5776 0.0555 0.0005 7 6 6.2511 1.2178 0.1103 8 8 5.6475 2.2697 0.1211 9 6 7.7541 1.2103 0.2198 10 6 8.2644 2.6482 0.3327 11 6 9.7674 2.6407 0.4429 12 1 10.3049 1.7041 0.4329 13 6 10.4562 3.8297 0.5564 14 7 9.8018 4.9703 0.5680 15 14 12.3193 3.8203 0.6922 16 1 12.9150 3.8919 -0.6663 17 1 12.7633 4.9917 1.4896 18 1 12.7606 2.5701 1.3609 19 6 3.4863 -1.1496 -0.0054 20 7 2.1665 -1.1460 -0.0001 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3634 0.8899 0.5139 24 1 1.6545 2.1325 -0.0004 25 1 6.0628 -0.7802 -0.0827 26 1 8.0511 0.6491 1.1058 27 1 8.1807 0.7416 -0.6670 28 1 7.9675 3.2098 -0.5530 29 1 7.8378 3.1166 1.2198 30 1 10.2864 5.8068 0.6475 31 1 4.0246 -2.0859 -0.0096 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602401826.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:17 Heat of formation + Delta-G solvation = -16.878921 kcal Electronic energy + Delta-G solvation = -15515.411980 eV Core-core repulsion = 12795.967321 eV Total energy + Delta-G solvation = -2719.444658 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.36147 -40.56662 -36.59479 -35.56139 -34.97415 -33.35851 -32.71420 -28.86369 -27.34221 -25.90078 -24.41352 -23.06778 -21.40849 -19.34448 -18.85336 -18.30374 -17.08565 -16.90520 -16.79428 -16.46416 -15.92777 -15.59305 -14.95027 -14.46396 -14.22055 -13.71088 -13.65172 -13.28605 -13.16818 -12.82191 -12.52111 -12.43831 -12.26986 -11.92404 -11.68408 -11.64504 -11.31771 -11.07766 -10.56897 -9.86204 -9.34032 -8.18138 -6.32371 -0.24718 0.15379 1.42825 1.45497 1.56338 1.65418 1.78803 2.43097 2.76050 3.15267 3.22755 3.23373 3.43273 3.95599 4.04181 4.13143 4.48297 4.48804 4.53535 4.82541 4.87853 4.90475 5.06155 5.25179 5.48746 5.55085 5.61110 5.84466 6.05160 6.16052 6.45869 6.84932 6.87352 7.26165 7.38167 8.94553 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.077115 B = 0.004204 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.007207 B = 6659.291259 C = 6991.794770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.036 3.964 3 C 0.072 3.928 4 N -0.484 5.484 5 C 0.286 3.714 6 N -0.643 5.643 7 C 0.501 3.499 8 O -0.524 6.524 9 C -0.113 4.113 10 C 0.040 3.960 11 C -0.542 4.542 12 H 0.080 0.920 13 C -0.008 4.008 14 N -0.938 5.938 15 Si 0.975 3.025 16 H -0.272 1.272 17 H -0.288 1.288 18 H -0.254 1.254 19 C 0.038 3.962 20 N -0.430 5.430 21 H 0.091 0.909 22 H 0.081 0.919 23 H 0.096 0.904 24 H 0.186 0.814 25 H 0.441 0.559 26 H 0.113 0.887 27 H 0.114 0.886 28 H -0.018 1.018 29 H -0.018 1.018 30 H 0.262 0.738 31 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.204 -15.748 -1.391 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.089 4.089 4 N -0.204 5.204 5 C 0.052 3.948 6 N -0.293 5.293 7 C 0.289 3.711 8 O -0.396 6.396 9 C -0.153 4.153 10 C 0.002 3.998 11 C -0.580 4.580 12 H 0.098 0.902 13 C -0.206 4.206 14 N -0.578 5.578 15 Si 0.798 3.202 16 H -0.197 1.197 17 H -0.214 1.214 18 H -0.177 1.177 19 C -0.128 4.128 20 N -0.144 5.144 21 H 0.110 0.890 22 H 0.100 0.900 23 H 0.114 0.886 24 H 0.203 0.797 25 H 0.282 0.718 26 H 0.131 0.869 27 H 0.132 0.868 28 H 0.001 0.999 29 H 0.000 1.000 30 H 0.071 0.929 31 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -14.501 -14.780 -1.343 20.750 hybrid contribution 1.143 0.454 0.022 1.230 sum -13.359 -14.326 -1.322 19.633 Atomic orbital electron populations 1.20694 0.84912 1.04811 1.04319 1.22688 1.00152 0.88844 0.98718 1.23988 0.88760 1.00825 0.95332 1.68438 1.10282 1.29176 1.12511 1.19949 0.86565 0.91704 0.96552 1.43626 1.02520 1.11785 1.71346 1.21856 0.91635 0.82994 0.74625 1.90770 1.70742 1.32388 1.45653 1.21681 0.87347 1.00753 1.05532 1.18716 0.95066 0.91237 0.94745 1.21710 0.92456 0.93564 1.50251 0.90238 1.26151 1.04514 0.95150 0.94740 1.70179 1.38013 0.98376 1.51269 0.85310 0.78328 0.78169 0.78363 1.19748 1.21385 1.17725 1.23681 0.90626 0.97600 1.00843 1.68305 1.07828 1.29525 1.08790 0.89030 0.89974 0.88554 0.79695 0.71757 0.86917 0.86806 0.99921 0.99986 0.92897 0.77391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 10.19 71.24 0.73 -0.41 16 2 C 0.04 0.79 6.78 42.51 0.29 1.07 16 3 C 0.07 1.89 10.87 84.65 0.92 2.81 16 4 N -0.48 -16.93 8.07 -192.42 -1.55 -18.48 16 5 C 0.29 8.29 7.43 132.87 0.99 9.27 16 6 N -0.64 -17.46 5.39 -308.13 -1.66 -19.12 16 7 C 0.50 19.36 7.79 87.66 0.68 20.05 16 8 O -0.52 -26.31 14.27 -3.03 -0.04 -26.36 16 9 C -0.11 -4.34 5.64 29.85 0.17 -4.17 16 10 C 0.04 2.20 4.26 29.85 0.13 2.33 16 11 C -0.54 -30.39 9.11 25.60 0.23 -30.15 16 12 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 13 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 14 N -0.94 -59.61 13.29 21.45 0.28 -59.32 16 15 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 17 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 19 C 0.04 0.81 11.09 84.90 0.94 1.75 16 20 N -0.43 -9.82 10.41 -182.78 -1.90 -11.72 16 21 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 22 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 23 H 0.10 0.86 8.08 -2.39 -0.02 0.84 16 24 H 0.19 3.85 8.06 -2.91 -0.02 3.82 16 25 H 0.44 7.13 8.71 -92.71 -0.81 6.32 16 26 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 27 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 28 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 29 H -0.02 -1.15 8.10 -2.38 -0.02 -1.17 16 30 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.21 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -83.50 278.63 3.02 -80.47 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.34 Total: 5.99 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 5.54 Total: 2.54 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -4.83 Total: -108.65 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.04 Total: -26.36 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -83.50 3.02 -80.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602401826.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.595 kcal (2) G-P(sol) polarization free energy of solvation -83.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds